Kirrel3 (kirre like nephrin family adhesion molecule 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Kirrel3 (kirre like nephrin family adhesion molecule 3) Rattus norvegicus
Analyze
Symbol: Kirrel3
Name: kirre like nephrin family adhesion molecule 3
RGD ID: 1311382
Description: Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in hemopoiesis; homophilic cell adhesion via plasma membrane adhesion molecules; and nervous system development. Predicted to act upstream of or within glomerulus morphogenesis; inter-male aggressive behavior; and nervous system development. Predicted to be located in several cellular components, including axon; dendritic shaft; and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 4. Orthologous to human KIRREL3 (kirre like nephrin family adhesion molecule 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: kin of IRRE like 3; kin of IRRE like 3 (Drosophila); kin of IRRE-like protein 3; LOC315546
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2832,865,779 - 33,407,555 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl836,125,999 - 36,254,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0835,692,525 - 36,254,755 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0835,722,596 - 36,273,792 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,300,350 - 34,835,957 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1834,425,084 - 34,844,541 (+)NCBI
Celera834,284,951 - 34,824,973 (+)NCBICelera
Cytogenetic Map8q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12665856   PMID:16874800   PMID:21241806   PMID:23637329   PMID:25902260   PMID:26575286  


Genomics

Comparative Map Data
Kirrel3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2832,865,779 - 33,407,555 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl836,125,999 - 36,254,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0835,692,525 - 36,254,755 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0835,722,596 - 36,273,792 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,300,350 - 34,835,957 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1834,425,084 - 34,844,541 (+)NCBI
Celera834,284,951 - 34,824,973 (+)NCBICelera
Cytogenetic Map8q21NCBI
KIRREL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11126,423,358 - 127,003,460 (-)EnsemblGRCh38hg38GRCh38
GRCh3811126,423,358 - 127,003,460 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711126,293,253 - 126,870,766 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,799,613 - 126,375,701 (-)NCBINCBI36hg18NCBI36
Build 3411125,799,684 - 126,375,615NCBI
Celera11123,459,514 - 124,037,646 (-)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11122,817,366 - 122,817,789 (-)NCBIHuRef
HuRef11122,238,286 - 122,410,924 (-)NCBIHuRef
CHM1_111126,179,676 - 126,756,915 (-)NCBICHM1_1
Kirrel3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39934,396,850 - 34,952,103 (+)NCBIGRCm39mm39
GRCm39 Ensembl934,397,190 - 34,948,012 (+)Ensembl
GRCm38934,485,853 - 35,040,807 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl934,485,894 - 35,036,716 (+)EnsemblGRCm38mm10GRCm38
MGSCv37934,296,316 - 34,843,889 (+)NCBIGRCm37mm9NCBIm37
MGSCv36934,238,296 - 34,785,975 (+)NCBImm8
Celera931,740,583 - 32,293,826 (+)NCBICelera
Cytogenetic Map9A4NCBI
Kirrel3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,428,360 - 27,991,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,428,360 - 27,994,458 (-)NCBIChiLan1.0ChiLan1.0
KIRREL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111125,146,563 - 125,726,452 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11125,146,563 - 125,723,504 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011121,236,962 - 121,821,806 (-)NCBIMhudiblu_PPA_v0panPan3
KIRREL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.157,583,530 - 8,124,045 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl57,583,805 - 8,123,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha57,645,744 - 8,184,370 (+)NCBI
ROS_Cfam_1.057,538,980 - 8,078,718 (+)NCBI
UMICH_Zoey_3.157,996,350 - 8,148,415 (+)NCBI
UNSW_CanFamBas_1.057,583,374 - 8,122,445 (+)NCBI
UU_Cfam_GSD_1.057,616,414 - 8,156,314 (+)NCBI
Kirrel3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,652,952 - 108,687,285 (-)NCBI
SpeTri2.0NW_0049365725,763,098 - 5,797,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIRREL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,491,950 - 54,063,480 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,493,735 - 54,066,490 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,332,982 - 59,498,767 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIRREL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,553,388 - 118,122,895 (-)NCBI
ChlSab1.11117,553,388 - 118,122,895 (-)NCBI
ChlSab1.1 Ensembl1117,551,940 - 117,687,637 (-)Ensembl
Vero_WHO_p1.0NW_0236660437,949,043 - 8,520,592 (+)NCBI
Kirrel3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624812561,290 - 1,158,012 (-)NCBI

Position Markers
D8Rat100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,343,218 - 33,343,426 (+)MAPPERmRatBN7.2
Rnor_6.0836,181,831 - 36,182,038NCBIRnor6.0
Rnor_5.0836,203,861 - 36,204,068UniSTSRnor5.0
RGSC_v3.4834,773,456 - 34,773,664RGDRGSC3.4
RGSC_v3.4834,773,457 - 34,773,664UniSTSRGSC3.4
RGSC_v3.1834,782,222 - 34,782,430RGD
Celera834,761,230 - 34,761,437UniSTS
FHH x ACI Map826.99RGD
FHH x ACI Map826.99UniSTS
Cytogenetic Map8q21UniSTS
D3Mco55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,161,693 - 33,161,853 (+)MAPPERmRatBN7.2
Rnor_6.0835,996,819 - 35,996,978NCBIRnor6.0
Rnor_5.0836,023,372 - 36,023,531UniSTSRnor5.0
RGSC_v3.4834,589,399 - 34,589,558UniSTSRGSC3.4
RGSC_v3.43168,596,925 - 168,597,084UniSTSRGSC3.4
Celera834,580,747 - 34,580,906UniSTS
Cytogenetic Map8q21UniSTS
D8Got342  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2832,880,533 - 32,880,641 (+)MAPPERmRatBN7.2
Rnor_6.0835,707,396 - 35,707,503NCBIRnor6.0
Rnor_5.0835,737,551 - 35,737,658UniSTSRnor5.0
RGSC_v3.4834,315,019 - 34,315,126UniSTSRGSC3.4
Celera834,299,654 - 34,299,761UniSTS
Cytogenetic Map8q21UniSTS
BF386659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,400,488 - 33,400,638 (+)MAPPERmRatBN7.2
Rnor_6.0836,249,564 - 36,249,713NCBIRnor6.0
Rnor_5.0836,268,601 - 36,268,750UniSTSRnor5.0
RGSC_v3.4834,830,766 - 34,830,915UniSTSRGSC3.4
Celera834,819,782 - 34,819,931UniSTS
RH 3.4 Map8286.2UniSTS
Cytogenetic Map8q21UniSTS
BF394891  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2832,894,130 - 32,894,332 (+)MAPPERmRatBN7.2
Rnor_6.0835,721,222 - 35,721,423NCBIRnor6.0
Rnor_5.0835,751,377 - 35,751,578UniSTSRnor5.0
RGSC_v3.4834,329,087 - 34,329,288UniSTSRGSC3.4
Celera834,313,575 - 34,313,776UniSTS
RH 3.4 Map8283.8UniSTS
Cytogenetic Map8q21UniSTS
BF400294  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2832,993,617 - 32,993,805 (+)MAPPERmRatBN7.2
Rnor_6.0835,826,848 - 35,827,035NCBIRnor6.0
Rnor_5.0835,855,280 - 35,855,467UniSTSRnor5.0
RGSC_v3.4834,419,393 - 34,419,580UniSTSRGSC3.4
Celera834,413,267 - 34,413,454UniSTS
RH 3.4 Map8284.7UniSTS
Cytogenetic Map8q21UniSTS
BF399480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,164,860 - 33,165,015 (+)MAPPERmRatBN7.2
Rnor_6.0835,999,983 - 36,000,137NCBIRnor6.0
Rnor_5.0836,026,536 - 36,026,690UniSTSRnor5.0
RGSC_v3.4834,592,566 - 34,592,720UniSTSRGSC3.4
Celera834,583,896 - 34,584,050UniSTS
RH 3.4 Map8285.5UniSTS
Cytogenetic Map8q21UniSTS
AU047192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,346,612 - 33,346,771 (+)MAPPERmRatBN7.2
Rnor_6.0836,185,225 - 36,185,383NCBIRnor6.0
Rnor_5.0836,207,255 - 36,207,413UniSTSRnor5.0
RGSC_v3.4834,776,851 - 34,777,009UniSTSRGSC3.4
Celera834,764,624 - 34,764,782UniSTS
Cytogenetic Map8q21UniSTS
RH138076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,123,938 - 33,124,083 (+)MAPPERmRatBN7.2
Rnor_6.0835,958,153 - 35,958,297NCBIRnor6.0
Rnor_5.0835,986,322 - 35,986,466UniSTSRnor5.0
RGSC_v3.4834,549,693 - 34,549,837UniSTSRGSC3.4
Celera834,543,076 - 34,543,220UniSTS
RH 3.4 Map8285.6UniSTS
Cytogenetic Map8q21UniSTS
RH139479  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,405,283 - 33,405,464 (+)MAPPERmRatBN7.2
Rnor_6.0836,254,359 - 36,254,539NCBIRnor6.0
Rnor_5.0836,273,396 - 36,273,576UniSTSRnor5.0
RGSC_v3.4834,835,561 - 34,835,741UniSTSRGSC3.4
Celera834,824,577 - 34,824,757UniSTS
RH 3.4 Map8288.6UniSTS
Cytogenetic Map8q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8210812847108128Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8210812847108128Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8210812847108128Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8210812847108128Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8736807652368076Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8736807652368076Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8736807652368076Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8873867753738677Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)89531047119211942Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)81038843955388439Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)81038843955388439Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810938911120496129Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81137326757541668Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81137350945712344Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81137350945712344Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81144825156448251Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81144825156448251Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81766655562666555Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)82071759265717592Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)82146491991140553Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)821813070100873963Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82784149672841496Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82816802350708951Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82986798359908353Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)829867983106526740Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)829867983106526740Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)829867983106526740Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83014480075144800Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)83014480075144800Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)83091811258858224Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)83091811275918112Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)830918112107206309Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83220198154065241Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83220198175971421Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)832888352101374135Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83355866044219353Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866046588570Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866062857995Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83355866065717592Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83355866065717592Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83355866089058369Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83355866089058369Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83355866089058369Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83355866089058369Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)833558660109028082Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)833558660109028082Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)833558660109028082Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)833558764113580387Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83504141480041414Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83592559480925594Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:463
Count of miRNA genes:235
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000013036
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64 4
Low 11 18 2 16 2 1 1 10 34 36 11 1
Below cutoff 3 32 13 13 3 13 6 7 1 1 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013036   ⟹   ENSRNOP00000013036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl836,125,999 - 36,254,753 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088046   ⟹   ENSRNOP00000073469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl836,126,081 - 36,253,721 (+)Ensembl
RefSeq Acc Id: NM_001048215   ⟹   NP_001041680
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,865 - 33,405,680 (+)NCBI
Rnor_6.0835,692,525 - 36,254,755 (+)NCBI
Rnor_5.0835,722,596 - 36,273,792 (+)NCBI
RGSC_v3.4834,300,350 - 34,835,957 (+)RGD
Celera834,284,951 - 34,824,973 (+)RGD
Sequence:
RefSeq Acc Id: XM_039081392   ⟹   XP_038937320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,780 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081393   ⟹   XP_038937321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,779 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081394   ⟹   XP_038937322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,783 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081395   ⟹   XP_038937323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,782 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081396   ⟹   XP_038937324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,782 - 33,404,801 (+)NCBI
RefSeq Acc Id: XM_039081397   ⟹   XP_038937325
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,784 - 33,404,801 (+)NCBI
RefSeq Acc Id: XM_039081398   ⟹   XP_038937326
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2833,379,587 - 33,407,555 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001041680   ⟸   NM_001048215
- Peptide Label: precursor
- UniProtKB: Q09GS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073469   ⟸   ENSRNOT00000088046
RefSeq Acc Id: ENSRNOP00000013036   ⟸   ENSRNOT00000013036
RefSeq Acc Id: XP_038937321   ⟸   XM_039081393
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937320   ⟸   XM_039081392
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937323   ⟸   XM_039081395
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038937324   ⟸   XM_039081396
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038937322   ⟸   XM_039081394
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937325   ⟸   XM_039081397
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937326   ⟸   XM_039081398
- Peptide Label: isoform X7
Protein Domains
Ig-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311382 AgrOrtholog
Ensembl Genes ENSRNOG00000009772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013036 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000073469 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013036 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000088046 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
KEGG Report rno:315546 UniProtKB/TrEMBL
NCBI Gene 315546 ENTREZGENE
Pfam I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
PhenoGen Kirrel3 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2K5L4_RAT UniProtKB/TrEMBL
  E9PTD7_RAT UniProtKB/TrEMBL
  Q09GS6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-21 Kirrel3  kirre like nephrin family adhesion molecule 3  Kirrel3  kin of IRRE like 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Kirrel3  kin of IRRE like 3 (Drosophila)   Kirrel3_predicted  kin of IRRE like 3 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kirrel3_predicted  kin of IRRE like 3 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED