Kirrel3 (kirre like nephrin family adhesion molecule 3) - Rat Genome Database

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Gene: Kirrel3 (kirre like nephrin family adhesion molecule 3) Rattus norvegicus
Analyze
Symbol: Kirrel3
Name: kirre like nephrin family adhesion molecule 3
RGD ID: 1311382
Description: Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in hemopoiesis; homophilic cell adhesion via plasma membrane adhesion molecules; and nervous system development. Predicted to act upstream of or within glomerulus morphogenesis; inter-male aggressive behavior; and nervous system development. Predicted to be located in several cellular components, including axon; dendritic shaft; and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 4. Orthologous to human KIRREL3 (kirre like nephrin family adhesion molecule 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: kin of IRRE like 3; kin of IRRE like 3 (Drosophila); kin of IRRE-like protein 3; LOC315546
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2832,865,779 - 33,407,555 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl832,862,776 - 33,405,676 (+)Ensembl
Rnor_6.0835,692,525 - 36,254,755 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,125,999 - 36,254,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0835,722,596 - 36,273,792 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,300,350 - 34,835,957 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1834,425,084 - 34,844,541 (+)NCBI
Celera834,284,951 - 34,824,973 (+)NCBICelera
Cytogenetic Map8q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12665856   PMID:16874800   PMID:21241806   PMID:23637329   PMID:25902260   PMID:26575286  


Genomics

Comparative Map Data
Kirrel3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2832,865,779 - 33,407,555 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl832,862,776 - 33,405,676 (+)Ensembl
Rnor_6.0835,692,525 - 36,254,755 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,125,999 - 36,254,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0835,722,596 - 36,273,792 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,300,350 - 34,835,957 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1834,425,084 - 34,844,541 (+)NCBI
Celera834,284,951 - 34,824,973 (+)NCBICelera
Cytogenetic Map8q21NCBI
KIRREL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,423,358 - 127,000,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11126,423,358 - 127,003,460 (-)EnsemblGRCh38hg38GRCh38
GRCh3711126,293,253 - 126,870,766 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,799,613 - 126,375,701 (-)NCBINCBI36hg18NCBI36
Build 3411125,799,684 - 126,375,615NCBI
Celera11123,459,514 - 124,037,646 (-)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11122,817,366 - 122,817,789 (-)NCBIHuRef
HuRef11122,238,286 - 122,410,924 (-)NCBIHuRef
CHM1_111126,179,676 - 126,756,915 (-)NCBICHM1_1
T2T-CHM13v2.011126,454,803 - 127,034,001 (-)NCBI
Kirrel3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39934,396,850 - 34,952,103 (+)NCBIGRCm39mm39
GRCm39 Ensembl934,397,190 - 34,948,012 (+)Ensembl
GRCm38934,485,853 - 35,040,807 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl934,485,894 - 35,036,716 (+)EnsemblGRCm38mm10GRCm38
MGSCv37934,296,316 - 34,843,889 (+)NCBIGRCm37mm9NCBIm37
MGSCv36934,238,296 - 34,785,975 (+)NCBImm8
Celera931,740,583 - 32,293,826 (+)NCBICelera
Cytogenetic Map9A4NCBI
Kirrel3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,428,360 - 27,991,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,428,360 - 27,994,458 (-)NCBIChiLan1.0ChiLan1.0
KIRREL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111125,146,563 - 125,726,452 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11125,146,563 - 125,723,504 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011121,236,962 - 121,821,806 (-)NCBIMhudiblu_PPA_v0panPan3
KIRREL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.157,583,530 - 8,124,045 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl57,583,805 - 8,123,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha57,645,744 - 8,184,370 (+)NCBI
ROS_Cfam_1.057,538,980 - 8,078,718 (+)NCBI
ROS_Cfam_1.0 Ensembl57,539,227 - 8,078,660 (+)Ensembl
UMICH_Zoey_3.157,996,350 - 8,148,415 (+)NCBI
UNSW_CanFamBas_1.057,583,374 - 8,122,445 (+)NCBI
UU_Cfam_GSD_1.057,616,414 - 8,156,314 (+)NCBI
Kirrel3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,652,952 - 108,687,285 (-)NCBI
SpeTri2.0NW_0049365725,763,098 - 5,797,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIRREL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,491,950 - 54,063,480 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,493,735 - 54,066,490 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,332,982 - 59,498,767 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIRREL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,553,388 - 118,122,895 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,551,940 - 117,687,637 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660437,949,043 - 8,520,592 (+)NCBIVero_WHO_p1.0
Kirrel3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812562,308 - 1,154,934 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624812561,290 - 1,158,012 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D8Rat100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,343,218 - 33,343,426 (+)MAPPERmRatBN7.2
Rnor_6.0836,181,831 - 36,182,038NCBIRnor6.0
Rnor_5.0836,203,861 - 36,204,068UniSTSRnor5.0
RGSC_v3.4834,773,456 - 34,773,664RGDRGSC3.4
RGSC_v3.4834,773,457 - 34,773,664UniSTSRGSC3.4
RGSC_v3.1834,782,222 - 34,782,430RGD
Celera834,761,230 - 34,761,437UniSTS
FHH x ACI Map826.99RGD
FHH x ACI Map826.99UniSTS
Cytogenetic Map8q21UniSTS
D3Mco55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,161,693 - 33,161,853 (+)MAPPERmRatBN7.2
Rnor_6.0835,996,819 - 35,996,978NCBIRnor6.0
Rnor_5.0836,023,372 - 36,023,531UniSTSRnor5.0
RGSC_v3.4834,589,399 - 34,589,558UniSTSRGSC3.4
RGSC_v3.43168,596,925 - 168,597,084UniSTSRGSC3.4
Celera834,580,747 - 34,580,906UniSTS
Cytogenetic Map8q21UniSTS
D8Got342  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2832,880,533 - 32,880,641 (+)MAPPERmRatBN7.2
Rnor_6.0835,707,396 - 35,707,503NCBIRnor6.0
Rnor_5.0835,737,551 - 35,737,658UniSTSRnor5.0
RGSC_v3.4834,315,019 - 34,315,126UniSTSRGSC3.4
Celera834,299,654 - 34,299,761UniSTS
Cytogenetic Map8q21UniSTS
BF386659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,400,488 - 33,400,638 (+)MAPPERmRatBN7.2
Rnor_6.0836,249,564 - 36,249,713NCBIRnor6.0
Rnor_5.0836,268,601 - 36,268,750UniSTSRnor5.0
RGSC_v3.4834,830,766 - 34,830,915UniSTSRGSC3.4
Celera834,819,782 - 34,819,931UniSTS
RH 3.4 Map8286.2UniSTS
Cytogenetic Map8q21UniSTS
BF394891  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2832,894,130 - 32,894,332 (+)MAPPERmRatBN7.2
Rnor_6.0835,721,222 - 35,721,423NCBIRnor6.0
Rnor_5.0835,751,377 - 35,751,578UniSTSRnor5.0
RGSC_v3.4834,329,087 - 34,329,288UniSTSRGSC3.4
Celera834,313,575 - 34,313,776UniSTS
RH 3.4 Map8283.8UniSTS
Cytogenetic Map8q21UniSTS
BF400294  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2832,993,617 - 32,993,805 (+)MAPPERmRatBN7.2
Rnor_6.0835,826,848 - 35,827,035NCBIRnor6.0
Rnor_5.0835,855,280 - 35,855,467UniSTSRnor5.0
RGSC_v3.4834,419,393 - 34,419,580UniSTSRGSC3.4
Celera834,413,267 - 34,413,454UniSTS
RH 3.4 Map8284.7UniSTS
Cytogenetic Map8q21UniSTS
BF399480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,164,860 - 33,165,015 (+)MAPPERmRatBN7.2
Rnor_6.0835,999,983 - 36,000,137NCBIRnor6.0
Rnor_5.0836,026,536 - 36,026,690UniSTSRnor5.0
RGSC_v3.4834,592,566 - 34,592,720UniSTSRGSC3.4
Celera834,583,896 - 34,584,050UniSTS
RH 3.4 Map8285.5UniSTS
Cytogenetic Map8q21UniSTS
AU047192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,346,612 - 33,346,771 (+)MAPPERmRatBN7.2
Rnor_6.0836,185,225 - 36,185,383NCBIRnor6.0
Rnor_5.0836,207,255 - 36,207,413UniSTSRnor5.0
RGSC_v3.4834,776,851 - 34,777,009UniSTSRGSC3.4
Celera834,764,624 - 34,764,782UniSTS
Cytogenetic Map8q21UniSTS
RH138076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,123,938 - 33,124,083 (+)MAPPERmRatBN7.2
Rnor_6.0835,958,153 - 35,958,297NCBIRnor6.0
Rnor_5.0835,986,322 - 35,986,466UniSTSRnor5.0
RGSC_v3.4834,549,693 - 34,549,837UniSTSRGSC3.4
Celera834,543,076 - 34,543,220UniSTS
RH 3.4 Map8285.6UniSTS
Cytogenetic Map8q21UniSTS
RH139479  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,405,283 - 33,405,464 (+)MAPPERmRatBN7.2
Rnor_6.0836,254,359 - 36,254,539NCBIRnor6.0
Rnor_5.0836,273,396 - 36,273,576UniSTSRnor5.0
RGSC_v3.4834,835,561 - 34,835,741UniSTSRGSC3.4
Celera834,824,577 - 34,824,757UniSTS
RH 3.4 Map8288.6UniSTS
Cytogenetic Map8q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82664491246711092Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83084815440713225Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815442692818Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:463
Count of miRNA genes:235
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000013036
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64 4
Low 11 18 2 16 2 1 1 10 34 36 11 1
Below cutoff 3 32 13 13 3 13 6 7 1 1 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013036   ⟹   ENSRNOP00000013036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl832,866,169 - 33,405,676 (+)Ensembl
Rnor_6.0 Ensembl836,125,999 - 36,254,753 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088046   ⟹   ENSRNOP00000073469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl832,862,776 - 33,405,676 (+)Ensembl
Rnor_6.0 Ensembl836,126,081 - 36,253,721 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103546   ⟹   ENSRNOP00000080508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl832,862,776 - 33,405,676 (+)Ensembl
RefSeq Acc Id: NM_001048215   ⟹   NP_001041680
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,865 - 33,405,680 (+)NCBI
Rnor_6.0835,692,525 - 36,254,755 (+)NCBI
Rnor_5.0835,722,596 - 36,273,792 (+)NCBI
RGSC_v3.4834,300,350 - 34,835,957 (+)RGD
Celera834,284,951 - 34,824,973 (+)RGD
Sequence:
RefSeq Acc Id: XM_039081392   ⟹   XP_038937320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,780 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081393   ⟹   XP_038937321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,779 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081394   ⟹   XP_038937322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,783 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081395   ⟹   XP_038937323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,782 - 33,407,555 (+)NCBI
RefSeq Acc Id: XM_039081396   ⟹   XP_038937324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,782 - 33,404,801 (+)NCBI
RefSeq Acc Id: XM_039081397   ⟹   XP_038937325
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2832,865,784 - 33,404,801 (+)NCBI
RefSeq Acc Id: XM_039081398   ⟹   XP_038937326
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2833,379,587 - 33,407,555 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001041680   ⟸   NM_001048215
- Peptide Label: precursor
- UniProtKB: Q09GS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073469   ⟸   ENSRNOT00000088046
RefSeq Acc Id: ENSRNOP00000013036   ⟸   ENSRNOT00000013036
RefSeq Acc Id: XP_038937321   ⟸   XM_039081393
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937320   ⟸   XM_039081392
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937323   ⟸   XM_039081395
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038937324   ⟸   XM_039081396
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038937322   ⟸   XM_039081394
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937325   ⟸   XM_039081397
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937326   ⟸   XM_039081398
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000080508   ⟸   ENSRNOT00000103546
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTD7-F1-model_v2 AlphaFold E9PTD7 1-761 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311382 AgrOrtholog
BioCyc Gene G2FUF-31213 BioCyc
Ensembl Genes ENSRNOG00000009772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013036 UniProtKB/TrEMBL
  ENSRNOP00000073469 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000080508 ENTREZGENE
Ensembl Transcript ENSRNOT00000013036 UniProtKB/TrEMBL
  ENSRNOT00000088046 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000103546 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
KEGG Report rno:315546 UniProtKB/TrEMBL
NCBI Gene 315546 ENTREZGENE
Pfam I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
PhenoGen Kirrel3 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2K5L4_RAT UniProtKB/TrEMBL
  E9PTD7_RAT UniProtKB/TrEMBL
  Q09GS6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-21 Kirrel3  kirre like nephrin family adhesion molecule 3  Kirrel3  kin of IRRE like 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Kirrel3  kin of IRRE like 3 (Drosophila)   Kirrel3_predicted  kin of IRRE like 3 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kirrel3_predicted  kin of IRRE like 3 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED