Alc20 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Alc20 (Alcohol consumption QTL 20) Rattus norvegicus

Symbol: Alc20
Name: Alcohol consumption QTL 20
RGD ID: 70206
Previously known as: Eoh3
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: ethanol intake volume to total fluid intake volume ratio   (CMO:0001591)    
LOD Score: 2.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2830,848,154 - 40,713,225RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0833,558,660 - 44,219,353RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0833,603,024 - 61,319,565RGDRnor5.0
RGSC_v3.4832,203,394 - 43,314,410RGDRGSC3.4
RGSC_v3.1832,212,161 - 43,323,174RGD
Cross Type: intercross
Strains Crossed: P NP 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Drd2 is a candidate Gene for Alc20
Htr1b is a candidate Gene for Alc20

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Measurement Method

Vertebrate Trait

Rat Strain
NP  (IEA)
P  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genomic screen for QTLs underlying alcohol consumption in the P and NP rat lines. Bice P, etal., Mamm Genome 1998 Dec;9(12):949-55.
2. QTL Data Transfer QTL data import from the RatMap database

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
61833Nrgnneurogranin83725546237263659Rat
631358Olr1271olfactory receptor 127183912740939131889Rat
621657Scn3bsodium voltage-gated channel beta subunit 384063037240652869Rat
628887Dcpsdecapping enzyme, scavenger83346866933524407Rat
620545Chek1checkpoint kinase 183642056536443477Rat
1303068St3gal4ST3 beta-galactoside alpha-2,3-sialyltransferase 483341566633465365Rat
735137Panx3pannexin 383736675837377640Rat
2583Ets1ETS proto-oncogene 1, transcription factor83104590931168010Rat
1306811Hepacamhepatic and glial cell adhesion molecule83708786437106759Rat
620153Acrv1acrosomal vesicle protein 183640439436409971Rat
1305123Tbrg1transforming growth factor beta regulator 183735527437362933Rat
1305591Ccdc15coiled-coil domain containing 1583699114737068849Rat
68381Ddx25DEAD-box helicase 2583389422433910377Rat
1304554RGD1304554LOC36304383413114934132518Rat
735145Vwa5avon Willebrand factor A domain containing 5A83881517638848674Rat
1307173Fam118bfamily with sequence similarity 118, member B83356668133617310Rat
1303286Esamendothelial cell adhesion molecule83723822837249217Rat
619708Fez1fasciculation and elongation protein zeta 183654446236589684Rat
620154Spa17sperm autoantigenic protein 1783730743237318645Rat
708433Cdoncell adhesion associated, oncogene regulated83377512333861635Rat
1311504SrpraSRP receptor subunit alpha83356036533566458Rat
1333908Olr1244olfactory receptor 124483862822538636215Rat
1333234Olr1290-psolfactory receptor pseudogene 129083951706339517991Rat
1333936Olr1250olfactory receptor 125083870947838710410Rat
1333373Olr1333-psolfactory receptor pseudogene 133384033950240340437Rat
1333397Olr1214olfactory receptor 121483800921338010145Rat
1333827Olr1282-psolfactory receptor pseudogene 128283933984039340692Rat
1333266Olr1319olfactory receptor 131984011161940112557Rat
1333637Olr1262olfactory receptor 126283899047338991414Rat
1333403Olr1260olfactory receptor 126083892212338923055Rat
1333213Olr1251olfactory receptor 125183872246938723398Rat
1333214Olr1220olfactory receptor 122083832015838321099Rat
1333217Olr1318olfactory receptor 131884009518640096124Rat
1333509Olr1255-psolfactory receptor pseudogene 125583876090538761848Rat
1332836Olr1217olfactory receptor 121783806781738068749Rat
1333340Olr1224-psolfactory receptor pseudogene 122483837168238372716Rat
1332662Olr1219olfactory receptor 121983831523838316191Rat
1332666Olr1232olfactory receptor 123283848732538488257Rat
1333270Olr1223olfactory receptor 122383835872238359663Rat
1333195Olr1305olfactory receptor 130583980376739804720Rat
1333512Olr1230olfactory receptor 123083845454338470012Rat
1333519Olr1276-psolfactory receptor pseudogene 127683921897339219521Rat
1333520Olr1231olfactory receptor 123183848201738482967Rat
1333492Olr1254olfactory receptor 125483875329138754223Rat
1333870Olr1198olfactory receptor 119883757535637576285Rat
1333872Olr1317-psolfactory receptor pseudogene 131784008398640084653Rat
1333894Olr1294olfactory receptor 129483961331139614246Rat
1333134Olr1332olfactory receptor 133284031965040320588Rat
1333164Olr1213olfactory receptor 121383799366737994611Rat
1310757Pus3pseudouridine synthase 383391046133918716Rat
1333142Olr1202olfactory receptor 120283772015837721087Rat
1333265Olr1240olfactory receptor 124083857243738573369Rat
1332823Olr1197olfactory receptor 119783755211137553043Rat
1333175Olr1321olfactory receptor 132184014918540150277Rat
1332639Olr1257olfactory receptor 125783880224138803176Rat
1332681Olr1199olfactory receptor 119983758875937589694Rat
1334003Olr1246olfactory receptor 124683865285538653787Rat
1334241Olr1215-psolfactory receptor pseudogene 121583803647438036557Rat
1334242Olr1194olfactory receptor 119483743490337435832Rat
1333768Olr1233olfactory receptor 123383849901338499954Rat
1332689Olr1238olfactory receptor 123883855979038560719Rat
1333750Olr1263-psolfactory receptor pseudogene 126383901053639011403Rat
1333764Olr1243olfactory receptor 124383861764838618580Rat
1332788Olr1283olfactory receptor 128383935791039358962Rat
1310431Siaesialic acid acetylesterase83731872437354004Rat
1311364Tmem218transmembrane protein 21883692455336940564Rat
1334026Olr1204olfactory receptor 120483779812537799069Rat
1333476Olr1248olfactory receptor 124883867694638677878Rat
1332827Olr1313olfactory receptor 131383996683239967767Rat
1333145Olr1273olfactory receptor 127383914372539144660Rat
1333632Olr1212-psolfactory receptor pseudogene 121283798202237982806Rat
1333329Olr1302olfactory receptor 130283974721239748156Rat
1333360Olr1316olfactory receptor 131684007172440072662Rat
1332597Olr1323olfactory receptor 132384018018240181117Rat
1311382Kirrel3kirre like nephrin family adhesion molecule 383286577933407555Rat
1333478Olr1304olfactory receptor 130483978910439790039Rat
1311785Foxred1FAD-dependent oxidoreductase domain containing 183355101033560227Rat
1333918Olr1320olfactory receptor 132084013311140134049Rat
1311744RGD1311744similar to RIKEN cDNA 5830475I0683986993739890669Rat
1332765Or10d5jlolfactory receptor family 10 subfamily D member 5J like84023763540238573Rat
1333391Olr1335olfactory receptor 133584035821140359143Rat
1333392Olr1249olfactory receptor 124983869151638692448Rat
1332874Olr1252olfactory receptor 125283873711338738045Rat
1332881Olr1325olfactory receptor 132584022631840227241Rat
1332884Olr1285olfactory receptor 128583938206239383006Rat
1305443Gramd1bGRAM domain containing 1B84065449240893869Rat
1333561Olr1291olfactory receptor 129183953379039534749Rat
1333406Olr1203olfactory receptor 120383775828137759228Rat
1309837Fli1Fli-1 proto-oncogene, ETS transcription factor83083142230950468Rat
1309868Ei24EI24, autophagy associated transmembrane protein83649428936510653Rat
1333121Olr1206olfactory receptor 120683783407037834996Rat
1332693Olr1328olfactory receptor 132884026646540268873Rat
1332698Olr1329olfactory receptor 132984028601740286949Rat
1332863Olr1339olfactory receptor 133984042386540424809Rat
1332870Olr1309olfactory receptor 130983990756139910447Rat
1332713Olr1312-psolfactory receptor pseudogene 131283995688439957330Rat
1333431Olr1303olfactory receptor 130383976314739764073Rat
1333436Olr1247olfactory receptor 124783866225638663176Rat
1333838Olr1208-psolfactory receptor pseudogene 120883789429837895227Rat
1333840Olr1275olfactory receptor 127583918056439181499Rat
1332791Olr1315olfactory receptor 131584002282740029159Rat
1332714Olr1222olfactory receptor 122283833973638342483Rat
1333247Olr1293olfactory receptor 129383959118139592125Rat
1333249Olr1308olfactory receptor 130883990325139904183Rat
1562294Zfp202zinc finger protein 20284054266540567397Rat
1563738RGD1563738similar to Discs, large homolog 5 (Placenta and prostate DLG)83816528838171353Rat
1334200Olr1292olfactory receptor 129283957596639576877Rat
1334332Olr1259olfactory receptor 125983888371338884660Rat
1333059Olr1242olfactory receptor 124283860879338609728Rat
1334342Olr1277-psolfactory receptor pseudogene 127783921623939216628Rat
1334343Olr1258-psolfactory receptor pseudogene 125883885656738857498Rat
1334352Olr1301olfactory receptor 130183972183039722774Rat
1334325Olr1324-psolfactory receptor pseudogene 132484020944840209834Rat
1334365Olr1270-psolfactory receptor pseudogene 127083910581939106497Rat
1562358Tmem225transmembrane protein 22584049748340500041Rat
1561274Vsig2V-set and immunoglobulin domain containing 283725010737255150Rat
1332988Olr1253olfactory receptor 125383874855138749483Rat
1311018Robo3roundabout guidance receptor 383713354237151674Rat
1333803Olr1295olfactory receptor 129583962832939629273Rat
1332726Olr1280olfactory receptor 128083928239339283352Rat
1332727Olr1264olfactory receptor 126483903199539032930Rat
1332728Olr1226olfactory receptor 122683840686838407809Rat
1332735Olr1195olfactory receptor 119583746206837462997Rat
1334105Olr1310-psolfactory receptor pseudogene 131083993646139936656Rat
1334109Olr1284-psolfactory receptor pseudogene 128483937207739372795Rat
1334306Olr1196olfactory receptor 119683747970637480638Rat
1334310Olr1274olfactory receptor 127483916181539162747Rat
1334315Olr1331olfactory receptor 133184030710740308044Rat
1333920Olr1200olfactory receptor 120083765152937652464Rat
1334033Olr1266olfactory receptor 126683905621539057150Rat
1334039Olr1235olfactory receptor 123583852191538522856Rat
1332744Olr1278olfactory receptor 127883922858139234499Rat
1311172Pate4prostate and testis expressed 483398881233991552Rat
1333788Olr1245olfactory receptor 124583864264538643577Rat
1311268Rpusd4RNA pseudouridine synthase D483361738433626873Rat
1334104Olr1234olfactory receptor 123483851056438511505Rat
1334183Olr1228olfactory receptor 122883842244938423390Rat
1334188Olr1201olfactory receptor 120183769357837694510Rat
1334189Olr1297olfactory receptor 129783965743939658383Rat
1562840Msantd2Myb/SANT DNA binding domain containing 283720089037234691Rat
1333074Olr1311olfactory receptor 131183994036839941312Rat
1333525Olr1256olfactory receptor 125683878143338782365Rat
1334147Olr1218olfactory receptor 121883830285738303789Rat
1333860Olr1307olfactory receptor 130783985845839859393Rat
1333864Olr1237olfactory receptor 123783854814138549070Rat
1334419Olr1298-psolfactory receptor pseudogene 129883968793839688237Rat
1334120Olr1241olfactory receptor 124183858629238587224Rat
1332904Olr1267-psolfactory receptor pseudogene 126783907022239071151Rat
1334293Olr1268-psolfactory receptor pseudogene 126883907827839079166Rat
1333447Olr1272-psolfactory receptor pseudogene 127283913796639138892Rat
1333722Olr1265olfactory receptor 126583904442239045375Rat
1333725Olr1299-psolfactory receptor pseudogene 129983969821739699024Rat
1333695Olr1296-psolfactory receptor pseudogene 129683964507139645941Rat
1333698Olr1236olfactory receptor 123683853368538534620Rat
1333701Olr1327olfactory receptor 132784025163840252573Rat
1333039Olr1334olfactory receptor 133484035243640353371Rat
1333041Olr1239olfactory receptor 123983856126938565887Rat
1333004Olr1288olfactory receptor 128883947848139479425Rat
1333009Olr1229olfactory receptor 122983845134938452290Rat
1334385Olr1341olfactory receptor 134184053815740539095Rat
1334386Olr1314olfactory receptor 131484000139440002311Rat
1564160Slc37a2solute carrier family 37 member 283694578736971748Rat
1333668Olr1306olfactory receptor 130683982767139839269Rat
1333673Olr1330olfactory receptor 133084029938640300312Rat
1333033Olr1300-psolfactory receptor pseudogene 130083971199539712837Rat
727919LOC171573spleen protein 1 precursor83630199836304822Rat
1333678Olr1205-psolfactory receptor 1205, pseudogene83781475937815702Rat
1333819Olr1225olfactory receptor 122583839280138393784Rat
1333731Olr1209-psolfactory receptor pseudogene 120983790190137902829Rat
1333733Olr1207-psolfactory receptor pseudogene 120783787517737876117Rat
1333734Olr1227olfactory receptor 122783841477838415710Rat
1333739Olr1261olfactory receptor 126183895224238953183Rat
1333740Olr1340olfactory receptor 134084046999740470932Rat
1333741Olr1279olfactory receptor 127983926220539263152Rat
1334391Olr1286olfactory receptor 128683941008739411046Rat
1560348Pdzd4-ps3PDZ domain containing 4, pseudogene 383581656335822611Rat
1332968Olr1287-psolfactory receptor pseudogene 128783946855539469496Rat
1332974Olr1338olfactory receptor 133884041235640413303Rat
1333299Olr1337olfactory receptor 133784037701840378068Rat
1333680Olr1269-psolfactory receptor pseudogene 126983909855039099479Rat
1560112RGD1560112similar to Urinary protein 2 precursor (RUP-2)83613395436135582Rat
1560153Haus8-ps1HAUS augmin-like complex, subunit 8, pseudogene 183828236138292326Rat
1583232Drg1-ps1developmentally regulated GTP binding protein 1, pseudogene 183838475238385449Rat
1565793Stt3aSTT3 oligosaccharyltransferase complex catalytic subunit A83644362336483111Rat
1561250Rup2urinary protein 283533676435340345Rat
1590037LOC688335similar to Spleen protein 1 precursor (RSP-1)83492514035018653Rat
1587341Gapdh-ps3Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 383145454631618904Rat
1588815LOC688473similar to 40S ribosomal protein S284003871840039422Rat
1588456Olr1210-psolfactory receptor pseudogene Olr1210-ps83795682737957156Rat
1588457Olr1281-psolfactory receptor pseudogene Olr1281-ps83932805639328397Rat
1590611Pknox2PBX/knotted 1 homeobox 283660063336863131Rat
1597167Eno1-ps15enolase 1, pseudogene 1583388285833883984Rat
1596115Hnrnpa1-ps3heterogeneous nuclear ribonucleoprotein A1, pseudogene 383592135935922336Rat
1593194Nudt5-ps1nudix hydrolase 5, pseudogene 183739989937400818Rat
1594169Hyls1HYLS1, centriolar and ciliogenesis associated83391301633922125Rat
1595496TirapTIR domain containing adaptor protein83353172433548508Rat
1591793LOC680406similar to Urinary protein 2 precursor (RUP-2)83548552135489142Rat
2319716Pate1prostate and testis expressed 183404861734050848Rat
2320100Pate2prostate and testis expressed 283401912334026850Rat
2318904Pate5prostate and testis expressed 583417324034178391Rat
2320151Pate3prostate and testis expressed 383401416434016175Rat
2318366LOC100362319olfactory receptor Olr1323-like84016525140166189Rat
2319566Ipo7-ps1importin 7, pseudogene 183853882238541316Rat
2322852LOC100360095urinary protein 1-like83467253634676228Rat
2322896LOC100360049rCG64165-like83445765934459269Rat
2322938Pate14-ps1prostate and testis expressed 14, pseudogene 183439285834394298Rat
2323077Pate14prostate and testis expressed 1483431755334319164Rat
2323120LOC100359924prostate and testis expressed N-like83408299534084226Rat
2322663Pdzd4-ps1PDZ domain containing 4, pseudogene 183536961635371802Rat
2321135Arhgap33-ps1Rho GTPase activating protein 33, pseudogene 183804587638049715Rat
4145545LOC100526654heat shock protein 90kDa alpha (cytosolic), class B member 1 pseudogene83788213137884151Rat
2323529LOC100359711ubiquitin and ribosomal protein L40-like83266565932689013Rat
2324268LOC100362690rCG64164-like83476400034765387Rat
2324568LOC100361828rCG22807-like83414131434143094Rat
6484596Pate-fprostate and testis expressed protein F83418873234199146Rat
6489452LOC100912026urinary protein 3-like83492140234924999Rat
6487535Rupl-ps1urinary protein like, pseudogene 183595579035959471Rat
6494870Robo4roundabout guidance receptor 483711996637133887Rat
6497623Rab1a-ps6RAB1A, member RAS oncogene family, pseudogene 683930108939301809Rat
7514595LOC102549473uncharacterized LOC10254947383722913837233210Rat
7523233LOC102555390uncharacterized LOC10255539083288553432896013Rat
7525038LOC102555114disks large homolog 5-like83809316638132654Rat
7637175LOC102548010uncharacterized LOC10254801083384921933855593Rat
7587451LOC102552355uncharacterized LOC10255235583121910431275957Rat
7594678LOC102554388olfactory receptor 143-like83832886538329916Rat
7564439LOC102551050disks large homolog 5-like83817863738183483Rat
7695267LOC102549537uncharacterized LOC10254953783606581636099625Rat
7686868LOC102552230uncharacterized LOC10255223083111666531120573Rat
7674986LOC102550569uncharacterized LOC10255056983810721438272604Rat
9140326LOC103693040prostate and testis expressed protein 2-like83423300334234092Rat
9185110LOC103693048uncharacterized LOC10369304883821317138254969Rat
9321686LOC103693061transcription initiation factor IIA subunit 2 pseudogene84034894840349619Rat
9245961LOC103693043uncharacterized LOC10369304383727045037279160Rat
9251694LOC103693047uncharacterized LOC10369304783575048235754157Rat
9389419LOC103690374olfactory receptor 145-like83803695238042118Rat
11357181LOC10835167460S ribosomal protein L14 pseudogene83659533136598288Rat
11474175Vsig10l2V-set and immunoglobulin domain containing 10 like 283386292433872115Rat
11457501LOC108351844uncharacterized LOC10835184483728621637290735Rat
11440283LOC108351823olfactory receptor 143-like83837770938378649Rat
11416889LOC10835182260S ribosomal protein L31 pseudogene83741498337433936Rat
11397299LOC108351821translation initiation factor IF-2-like83377460033780187Rat
11378565LOC108351675uncharacterized LOC10835167583677783436783723Rat
11508436LOC108351820ubiquitin-60S ribosomal protein L40 pseudogene83259829332598937Rat
41112635LOC120094552U6 spliceosomal RNA83615743436157540Rat
41169125LOC120094366olfactory receptor 8B12-like83752388337524815Rat
41113906LOC120094428U6 spliceosomal RNA83532713335327227Rat
41251151LOC120094113uncharacterized LOC12009411383637679236382542Rat
41325044LOC120094323uncharacterized LOC12009432383352427633532441Rat
41091117LOC120094418U6 spliceosomal RNA83452139934521495Rat
41389284LOC120094114uncharacterized LOC12009411483672901136733541Rat
41122929LOC120094110uncharacterized LOC12009411083529284735298425Rat
41192173LOC120094365olfactory receptor 8B12-like83749562237496554Rat
41288112LOC120094426U6 spliceosomal RNA83547586235475956Rat
41215239Hnrnpa1-ps21heterogeneous nuclear ribonucleoprotein A1, pseudogene 2183543114235432289Rat
41369833LOC120094109igE-binding protein-like83489864534901114Rat
41269693LOC120094422U6 spliceosomal RNA83594612135946213Rat
41371233NEWGENE_40926764transfer RNA proline (anticodon AGG)83700979537009875Rat
41398505LOC120094116uncharacterized LOC12009411683714529637147930Rat
41270931LOC120094117uncharacterized LOC12009411783714799937149335Rat
41291770LOC120094364secreted seminal-vesicle Ly-6 protein 183623532136238587Rat
41292761LOC120094414U6 spliceosomal RNA83571938435719480Rat
41129715LOC120094112uncharacterized LOC12009411283544136435463021Rat
41199000LOC120094108uncharacterized LOC12009410883473415934735336Rat
41351330LOC120094322uncharacterized LOC12009432283354816633556257Rat
41402054Pdzd4-ps2PDZ domain containing 4, pseudogene 283599778136004871Rat
41199729LOC120094367olfactory receptor 10G684036783840368844Rat
41403836LOC120094326uncharacterized LOC12009432683286623032917758Rat
41084381LOC120094325uncharacterized LOC12009432583335571533363014Rat
40945723LOC120094419U6 spliceosomal RNA83491189834911994Rat
41011963LOC120094427U1 spliceosomal RNA83382771133827878Rat
41015817LOC120094118uncharacterized LOC12009411883815715638178635Rat
41014417LOC120094119uncharacterized LOC12009411983819792538199391Rat
40940921LOC120094516U2 spliceosomal RNA83760598037606178Rat
40967990LOC120094105uncharacterized LOC12009410583215852232160567Rat
41074953LOC120094106uncharacterized LOC12009410683231415332359108Rat
41076425LOC120094434U7 small nuclear RNA83997072839970789Rat
41315961LOC120094497small nucleolar RNA SNORA1783230197032302101Rat
41316421Ormdl1-ps5ORMDL sphingolipid biosynthesis regulator 1, pseudogene 583582525435827206Rat
41336075LOC120094363uncharacterized LOC12009436383207090432075666Rat
41057909LOC120094104uncharacterized LOC12009410483111890331129070Rat
41036261LOC120094413U6 spliceosomal RNA83545467835454774Rat
41062962LOC120094476small nucleolar RNA SNORA4883349247633492616Rat
41305217LOC120094324uncharacterized LOC12009432483330855333310497Rat
41239353LOC120094120uncharacterized LOC12009412084054123040543426Rat
41308095Pate4bprostate and testis expressed 4B83396692633969936Rat
41309138LOC120094115uncharacterized LOC12009411583710267937104730Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10819D8Got4319283646953536469727Ratregion
33559D8Mit512283084815430848259Ratregion
36117D8Rat4615684071306640713225Ratregion
37602D8Rat8222183345076233450993Ratregion
37988D8Rat10020883334321833343426Ratregion
35867D8Rat4811083167251831672645Ratregion
35899D8Rat4713383656209036562213Ratregion
38358D8Rat8315083463232234632476Ratregion
42244D8Arb613083123656931236702Ratregion
42849D8Rat21912583667793736678067Ratregion
42349D8Rat22013883656209936562212Ratregion
42350D8Rat22113183116658131166723Ratregion
41718D8Rat18921383402236334022570Ratregion
44390D8Got4615383643991736440070Ratregion
44391D8Got19928583650214736502432Ratregion
44393D8Got21212383643995436440077Ratregion
44393D8Got21212383643995436440210Ratregion
44394D8Got4916283740667037406832Ratregion
44395D8Got5015984000877340008932Ratregion
60628D8Got4217283681722636817398Ratregion
60630D8Got4513583529832135298453Ratregion
60630D8Got4513583529832135298453Ratregion
60632D8Got5122183963430739634531Ratregion
1582036D3Mco5516083316169333161853Ratregion
1628730D8Got34210883288053332880641Ratregion
1630033D8Cebr115983714653637146695Ratregion
1639223D8Got34911983643996136440080Ratregion
1639223D8Got34911983643996136440213Ratregion
1632937D8Got31814183656328536563426Ratregion
1636900D8Wox2783116662631166775Ratregion
1637459D8Got33428283768341337683695Ratregion
1632538D8Got33724884029754340297793Ratregion
7206030Olfr87845183772056637721017Ratregion
5035707ETS111383116780031167913Ratregion
5028715RH6945717884035292740353105Ratregion
5028715RH6945717884035869940358877Ratregion
5034219RH14181720483353388333534087Ratregion
5026312RH13172819183341580833415999Ratregion
5032165RH12599920383362666133626864Ratregion
5032387AI19600015183116773331167884Ratregion
5032693RH13494721083694701036947220Ratregion
5030113BE09851021484055296840553182Ratregion
5027777RH9470117183110542031105591Ratregion
502784910.MMHAP16FRD7.seq16883285372232853890Ratregion
5033389RH13866023383089217430892407Ratregion
5033401RH13870017283116293531164432Ratregion
5028501AF0908668083385825633858336Ratregion
5051861RH9470019183116613631166327Ratregion
5051461AW0470468583389433933894424Ratregion
5053817RH14286815083114194931142099Ratregion
5054277RH14313212683644683236446958Ratregion
5057990BF38641515283093056030930712Ratregion
5058130BF38665915083340048833400638Ratregion
5059986BF39489120283289413032894332Ratregion
5060028BF40029418883299361732993805Ratregion
5052329U3199213283641001836410150Ratregion
5050528RH13410818783987058939870776Ratregion
5053999RH14297212383642089136421014Ratregion
5050296RH13397418483988558439885768Ratregion
5044246RH13049318083724903337249213Ratregion
5043812RH13024120483354867133548875Ratregion
5048766RH13309319084065264440652834Ratregion
5045188RH13103418783356400333564190Ratregion
5046200RH13161619083362654333626733Ratregion
5047730RH13249518583804947838049668Ratregion
5049750RH13366022083693964436939864Ratregion
5047292RH13224319683710490637105102Ratregion
5047408RH13231018383659699036597173Ratregion
5048456RH13291418283389440333895835Ratregion
5043016RH12978021484056270040562914Ratregion
5039736RH12787718383740014837400315Ratregion
5073840RH13766913883730659537306733Ratregion
5072394RH13682412783642083536420962Ratregion
5075258RH13849012783378035333780480Ratregion
5076894RH13944017783730750037307677Ratregion
5076962RH13947918183340528333405464Ratregion
5076040RH13894414883713338437133532Ratregion
5076268RH13907715083114194431142094Ratregion
5080106RH14138619983660064436600843Ratregion
5080232RH14146120483353175733531961Ratregion
5071682RH13522318383355304533553228Ratregion
5074540RH13807614583312393833124083Ratregion
5065050BF40559221683093079930931015Ratregion
5068042AU04738216683349886533499033Ratregion
5068362AU04719215983334661233346771Ratregion
5068712AU04697910283386162433861726Ratregion
5069995RH944089783116498831165085Ratregion
5068788AU04693124183268036332681209Ratregion
5069386AU04653318283388229333882471Ratregion
5060758BF38909513383391660733916740Ratregion
5063764AW53511415283721194637212098Ratregion
5062400BF39788315483721449637214650Ratregion
5062426BF40325621583713222937132444Ratregion
5062482BF39797117383653317536533348Ratregion
5064058BE12057420184067405840674259Ratregion
5062762AW53435515084054340140543551Ratregion
5064636BF39948015583316486033165015Ratregion
5061362BE11162220383699119636991399Ratregion
5066470AU04833725683822981638229882Ratregion
5084116AI17555818183356684133567022Ratregion
5086999AI22773415283735374737353899Ratregion
5082197BI28057117083396707933967249Ratregion
5082197BI28057117083398896333989133Ratregion
5087261AI22958115883735217437352332Ratregion
5088457AU04858118483349107433491260Ratregion
5089493AU04918829683176300931763305Ratregion
5081012RH14191319083347174333471933Ratregion
5090455AU04976023083848643538486667Ratregion
5085425BQ20143518583390156833901753Ratregion
5086831BE10595116783644683136446998Ratregion
5083761AI23058120583642965636429861Ratregion
5503970Serpinb6083187450631875418Ratregion
5505440Hyls154583391306333913608Ratregion
5505702UniSTS:48944693684016525340166189Ratregion
5505684UniSTS:48930895183990933139910282Ratregion
5505824UniSTS:495608104183951696539518006Ratregion
5505692UniSTS:48939194584042386440424809Ratregion
5505758UniSTS:492675107183994034239941413Ratregion
5506727G4483624683692747036927716Ratregion
5507265fb36c1088383238492932385812Ratregion
5507089UniSTS:22447510283725606137256163Ratregion
5507135UniSTS:22478616083190555631905716Ratregion
5499939UniSTS:23564522083804854138048781Ratregion
5500266D11S3963E10883658950936589617Ratregion
5500083UniSTS:23663031783356045333561647Ratregion
5500344GDB:19786315083356338733563674Ratregion
5502481RH125059083717278137173497Ratregion
5500835WS29083116779031167922Ratregion
5502537RH12521018883725595737256145Ratregion
Position Markers

Flank 1: (D8Mit5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2830,848,154 - 30,848,259 (+)MAPPER
Rnor_6.0833,558,660 - 33,558,764NCBI
Rnor_5.0833,603,024 - 33,603,128UniSTS
RGSC_v3.4832,203,395 - 32,203,499UniSTS
RGSC_v3.4832,203,394 - 32,203,499RGD
RGSC_v3.1832,212,161 - 32,212,265RGD
Celera832,299,483 - 32,299,583UniSTS
RH 3.4 Map8248.5UniSTS
RH 3.4 Map8248.5RGD
RH 2.0 Map8167.4RGD
Cytogenetic Map8q21UniSTS
Flank 2: (D8Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2840,713,066 - 40,713,225 (+)MAPPER
Rnor_6.0844,219,197 - 44,219,353NCBI
Rnor_5.0861,319,409 - 61,319,565UniSTS
RGSC_v3.4843,313,902 - 43,314,410RGD
RGSC_v3.4843,314,252 - 43,314,408UniSTS
RGSC_v3.1843,323,018 - 43,323,174RGD
RH 3.4 Map8361.4UniSTS
RH 3.4 Map8361.4RGD
RH 2.0 Map8275.8RGD
SHRSP x BN Map832.27RGD
FHH x ACI Map832.5199RGD
Cytogenetic Map8q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82664491246711092Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)82815732330848259Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83084815440713225Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815442692818Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Alc20


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Alc20  Alcohol consumption QTL 20  Eoh3  Alcohol preference QTL 1  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general suggestively associates with higher alcohol preference compared with the NP (alcohol non-preferring) strain; also suggestively linked to alcohol consumption 69704