LOC120094541 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094541 (U4 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120094541
Name: U4 spliceosomal RNA
RGD ID: 41387742
Description: Orthologous to human RNU4-61P (RNA, U4 small nuclear 61, pseudogene).
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U4
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,471,110 - 58,471,183 (+)NCBIGRCr8
mRatBN7.2849,574,620 - 49,574,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,574,620 - 49,574,709 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl849,574,620 - 49,574,709 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl853,544,382 - 53,544,471 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120094541
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,471,110 - 58,471,183 (+)NCBIGRCr8
mRatBN7.2849,574,620 - 49,574,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,574,620 - 49,574,709 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl849,574,620 - 49,574,709 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl853,544,382 - 53,544,471 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q23NCBI
RNU4-61P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38148,447,936 - 48,448,042 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl148,447,936 - 48,448,042 (+)EnsemblGRCh38hg38GRCh38
GRCh37148,913,608 - 48,913,714 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p33NCBI
CHM1_1149,031,002 - 49,031,108 (+)NCBICHM1_1
T2T-CHM13v2.0148,326,640 - 48,326,746 (+)NCBIT2T-CHM13v2.0
Gm22116
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,757,440 - 49,757,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,757,486 - 49,757,626 (-)EnsemblGRCm39 Ensembl
GRCm381449,519,983 - 49,520,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,520,029 - 49,520,169 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14C1NCBI

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1 to 10 of 61 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat

1 to 10 of 61 rows





GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,574,620 - 49,574,709 (+)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-30585 BioCyc
Ensembl Genes ENSRNOG00000053289 Ensembl
NCBI Gene LOC120094541 ENTREZGENE
PhenoGen LOC120094541 PhenoGen
RatGTEx ENSRNOG00000053289 RatGTEx
RNAcentral URS00006D2FF8 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094541  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15007799 737654 PROVISIONAL
2021-01-27 LOC120094541  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL