Ube2q2 (ubiquitin conjugating enzyme E2 Q2)

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Gene: Ube2q2 (ubiquitin conjugating enzyme E2 Q2) Rattus norvegicus

Analyze

Symbol:

Ube2q2

Name:

ubiquitin conjugating enzyme E2 Q2

RGD ID:

1307680

Description:

Predicted to have ubiquitin conjugating enzyme activity. Predicted to be involved in protein K48-linked ubiquitination. Orthologous to human UBE2Q2 (ubiquitin conjugating enzyme E2 Q2); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 3H-1,2-dithiole-3-thione; flutamide; nefazodone.

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC363065; RGD1307680; similar to RIKEN cDNA 3010021M21; ubiquitin-conjugating enzyme E2 Q2; ubiquitin-conjugating enzyme E2Q (putative) 2; ubiquitin-conjugating enzyme E2Q family member 2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Allele / Splice:

Ube2q2^em3Mcwi

Genetic Models:

SS-Ube2q2^em3Mcwi

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	59,709,972 - 59,754,102 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	59,711,549 - 59,766,889 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	58,292,660 - 58,349,722 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	58,688,257 - 58,749,088 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	58,649,776 - 58,767,495 (+)	NCBI
Celera	8	55,002,483 - 55,063,447 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3H-1,2-dithiole-3-thione (EXP)

7,9-dihydro-1H-purine-2,6,8(3H)-trione (ISO)

aflatoxin B1 (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

crocidolite asbestos (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenofibrate (ISO)

flutamide (EXP)

folic acid (ISO)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

nefazodone (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

protein K48-linked ubiquitination (IBA,ISO)

protein polyubiquitination (IBA)

Cellular Component

cellular_component (ND)

nucleus (IBA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

ubiquitin conjugating enzyme activity (IBA,ISO)

ubiquitin-protein transferase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Pipeline to import KEGG annotations from KEGG into RGD
3.	RGD automated data pipeline
4.	RGD automated import pipeline for gene-chemical interactions
5.	RGD comprehensive gene curation

Additional References at PubMed

PMID:16760379	PMID:20061386

Genomics

Comparative Map Data

Ube2q2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	59,709,972 - 59,754,102 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	59,711,549 - 59,766,889 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	58,292,660 - 58,349,722 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	58,688,257 - 58,749,088 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	58,649,776 - 58,767,495 (+)	NCBI
Celera	8	55,002,483 - 55,063,447 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

UBE2Q2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	75,843,307 - 75,901,078 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	75,843,343 - 75,901,078 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	76,135,622 - 76,193,388 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	73,922,855 - 73,980,440 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	15	53,061,306 - 53,119,318 (+)	NCBI
Cytogenetic Map	15	q24.2	NCBI
HuRef	15	52,891,934 - 52,949,669 (+)	NCBI		HuRef
CHM1_1	15	76,255,120 - 76,312,875 (+)	NCBI		CHM1_1

Ube2q2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	55,056,602 - 55,114,813 (+)	NCBI	GRCm39		mm39
GRCm38	9	55,149,369 - 55,207,529 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	55,148,854 - 55,207,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	54,997,176 - 55,055,336 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	54,947,515 - 55,005,665 (+)	NCBI			mm8
Celera	9	52,388,923 - 52,447,126 (+)	NCBI		Celera
Cytogenetic Map	9	B	NCBI

Ube2q2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	1,102,404 - 1,152,272 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	1,102,404 - 1,151,511 (+)	NCBI	ChiLan1.0	ChiLan1.0

UBE2Q2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	74,347,970 - 74,407,411 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	74,348,034 - 74,407,411 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	54,754,642 - 54,814,264 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

UBE2Q2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	30	40,101,540 - 40,189,159 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	30	40,130,456 - 40,189,244 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ube2q2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936471	36,257,454 - 36,314,634 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE2Q2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	56,084,023 - 56,186,352 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	56,084,017 - 56,144,915 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

UBE2Q2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	7,390,115 - 7,448,304 (-)	NCBI
ChlSab1.1 Ensembl	26	7,389,997 - 7,448,137 (-)	Ensembl

Ube2q2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624894	2,179,617 - 2,233,800 (-)	NCBI

Position Markers

D8Rat149

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	8	59,716,199 - 59,716,349	NCBI	Rnor6.0
Rnor_5.0	8	58,297,648 - 58,297,798	UniSTS	Rnor5.0
RGSC_v3.4	8	58,692,907 - 58,693,057	UniSTS	RGSC3.4
RGSC_v3.4	8	58,692,901 - 58,693,265	RGD	RGSC3.4
RGSC_v3.1	8	58,711,961 - 58,712,111	RGD
Celera	8	55,008,447 - 55,008,597	UniSTS
Cytogenetic Map	8	q24	UniSTS
RH 3.4 Map	8	614.2	RGD
RH 3.4 Map	8	614.2	UniSTS
RH 2.0 Map	8	480.2	RGD
SHRSP x BN Map	8	40.33	RGD

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	33558764	113580387	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	44219197	89542960	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	35041414	80041414	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	45712344	90712344	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	29867983	59908353	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10938911	120496129	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	58425510	106526740	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	54065044	89058369	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	54065044	89058369	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	21813070	100873963	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	21464919	91140553	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	30918112	107206309	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	30918112	75918112	Rat
1300150	Cm3	Cardiac mass QTL 3	3.97		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	58425679	59716199	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	33558660	62857995	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	45712344	80003418	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	39230130	106506973	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	59234112	108068306	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	32888352	101374135	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	17666555	62666555	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	44458129	118087517	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	29867983	106526740	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	44219197	100873963	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	33558660	65717592	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	58425510	91990535	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	9531047	119211942	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	33558660	109028082	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	33558660	109028082	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	33558660	109028082	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	50529480	128036471	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	50529480	128036471	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	50529480	128036471	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	50529480	128036471	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	45712475	75971259	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46588437	96998640	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	32201981	75971421	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	30144800	75144800	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	55659105	100659105	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	20717592	65717592	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	33558660	65717592	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	27841496	72841496	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	47200750	106394378	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	47200750	106394378	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	55435004	115812386	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	35925594	80925594	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	39958022	84958022	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	47200750	106394378	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	58425510	91990535	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	30144800	75144800	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	58230766	106394378	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	33558660	65717592	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	33558660	65717592	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	33558660	65717592	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	33558660	65717592	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39927901	84927901	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	29867983	106526740	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	33558660	89058369	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	47200750	106394378	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	54065044	89058369	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	33558660	89058369	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	33558660	89058369	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	29867983	106526740	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	47200750	106394378	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	47200750	106394378	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	50529563	106506973	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	33558660	89058369	Rat

Genetic Models

This gene Ube2q2 is modified in the following models/strains

SS-Ube2q2^em3Mcwi

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	22
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000019539
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	49	33	19	33	8	11	74	35	41	11	8
Low		1	8	8		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001072896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07070222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07070223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01054784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01054785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01054786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01054787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000019539 ⟹ ENSRNOP00000019539

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	59,711,549 - 59,766,889 (+)	Ensembl

RefSeq Acc Id:

XM_001072896 ⟹ XP_001072896

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	8	55,003,723 - 55,063,447 (+)	NCBI

Sequence:

show sequence

GCGGTCGCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGA
TGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGAC
AAGAACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGG
TGCCGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAA
CATCACGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTG
ACATCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGCTCCGTCAGCAATTGAAGT
GGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGA
TCAACCACTACCCACGGGTCAGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAG
GAAGAGATGGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTA
ATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAG
GAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGA
CTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGG
AGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCC
TTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTC
TCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAG
GAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGAACTTCTCACAAAACAGGGCTGGAGCAG
TGCCTACTCAATAGAATCTGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCTCGG
GTACAGTTTGGAGCAAATAAGAATCAGTATAATCTAGCACGAGCCCAGCAATCCTATAATTCCA
TTGTACAGATACATGAGAAAAATGGCTGGTACACACCTCCAAAGGAAGATGGCTAACTACATTG
ACATATGTCTGGACCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGA
GTGCCCGTATAACAGCAGTACCGAAGACATTAGCTAATAGATCATTTAGTGGATAATCTGTCAA
CTGACATCCAGTTACAGTCTTTTCATTTTGCTCACTTTAGGTATCTTGGACTGAGCAGTGGGGC
CTTTACTGAATTTTTCCTGATAAGTACACACAGTAGCCACTCCCTACCACCTCTTTCTTGAAAA
GTGAAATCTTTTAAGCAGGGAAGCTCAGCATCAGTTTACTGCAGCTGTGATTTTACAGTAACCT
TTCTATATTGAGCCTATGGGGTATGAAGATATGCAAAATCCTGTTCGTTTAGAGCCAATAAAAG
TTTAACTGATGGTCAATACTGGTTTAGAAATTTTAGGTCTTCTAAACCATAGCTTTTTCAGGTC
TGAAATCATTTTATTGCCAAAATTATGACAGGAAGCCTCTTCATTAACTTGTTACATTTTTCCA
TGGTTGTGTGAAGGTTTGAACTAGTCTGAAAGTCTGATTGTAATTGTGTCATGTTAGGTACAGC
AAAGCCAGGCAGCCACTTGTGACCGTAATTCCCACTGGGGCAGCAGGGTCTTGTTGAACTGAAC
CTGCTTCCTGTTGGTTCAACATTTCTTGTGAGGAAGAGCCACAGTGTAGAACCTGAAGTTCTAA
AGTATGAGGTCATTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGATGATAAGCTAATAAA
CGTATGGAATGATTGGCACAAAGACAGACTCTTGGAGCAAAATTACCTAAATTGGAGATCCTTA
AATTTTCCTATAGTCATGCAGTGACTTTTACATCAGAAGACTAGTAGGAATTCAGCCCATGTTA
ATTCTTTTATAAAGTGTGACATGAATCAACGTACTTTGCATTTTACTGCCTTACCTGAATCAGT
CCTCTTTGGTTGGCAATAGATTTCTTTTTTCTAATAATCCCATGTTTGATTTAAATCTAGCTAT
TTAAGCACTTTTAAAAAGAAACCCAGAAGCACATTTTCCTGCACAAACCAATACAGAGTTCAAT
GGTATTTCCTATATATTTGATTTGGGATTTTTTTTTTAAACTTTGTAAACCACAACTAGGAGAC
GTGGCACTTGTGCATTTTATGTGTGGTTTTAGTTTCTCTTGATTCTGTTGGTTAAGAGGGCAAT
AAAGATATCTGGTATTCTCGGTCACTTGGTTACCTTAAATAAATGATTACCAGTGACTCGGATG
ACAAGTGACAAGGCAGAATTCTTCAACACGTTATGAAGCTCCTTATGCCTAAGGCAAAATCTTG
AATATATTATTGAATTCTAATTTCCTACTAGCTAGCAGACTGACAGCTGCACATTCGGCATGCT
TTGGGTTGGTTTTTTTTTTTTTTTTGGATTTTATTTTTCATTGCAGATTTATTTGGCAATGTAC
AGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAAAATC

hide sequence

RefSeq Acc Id:

XM_006226405 ⟹ XP_006226467

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	8	55,003,723 - 55,063,447 (+)	NCBI

Sequence:

show sequence

GCGGTCGCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGA
TGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGAC
AAGAACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGG
TGCCGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAA
CATCACGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTG
ACATCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGAATGGCACAACGGAGGAAG
TAACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAAGATATAGAAGACTTGGATCACTACGA
GATGAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAAT
TTGGCAATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTG
GGTCAGTACAAGCATCAGATAGACTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTA
CAAGGCAGGGATCTATTCAGTGGAGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTA
CACAAGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCA
TAGAATATATTTTGCTTAACTTCTCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCG
AGTGGTGTTACCTGTTCTCTCAGGAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGAACTT
CTCACAAAACAGGGCTGGAGCAGTGCCTACTCAATAGAATCTGTCATCATGCAGATCAATGCCA
CCTTAGTGAAAGGCAAAGCTCGGGTACAGTTTGGAGCAAATAAGAATCAGTATAATCTAGCACG
AGCCCAGCAATCCTATAATTCCATTGTACAGATACATGAGAAAAATGGCTGGTACACACCTCCA
AAGGAAGATGGCTAACTACATTGACATATGTCTGGACCAATGTTGCTTTAAAGAAAATCGTTCC
AACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGACATTAGCTAATAGA
TCATTTAGTGGATAATCTGTCAACTGACATCCAGTTACAGTCTTTTCATTTTGCTCACTTTAGG
TATCTTGGACTGAGCAGTGGGGCCTTTACTGAATTTTTCCTGATAAGTACACACAGTAGCCACT
CCCTACCACCTCTTTCTTGAAAAGTGAAATCTTTTAAGCAGGGAAGCTCAGCATCAGTTTACTG
CAGCTGTGATTTTACAGTAACCTTTCTATATTGAGCCTATGGGGTATGAAGATATGCAAAATCC
TGTTCGTTTAGAGCCAATAAAAGTTTAACTGATGGTCAATACTGGTTTAGAAATTTTAGGTCTT
CTAAACCATAGCTTTTTCAGGTCTGAAATCATTTTATTGCCAAAATTATGACAGGAAGCCTCTT
CATTAACTTGTTACATTTTTCCATGGTTGTGTGAAGGTTTGAACTAGTCTGAAAGTCTGATTGT
AATTGTGTCATGTTAGGTACAGCAAAGCCAGGCAGCCACTTGTGACCGTAATTCCCACTGGGGC
AGCAGGGTCTTGTTGAACTGAACCTGCTTCCTGTTGGTTCAACATTTCTTGTGAGGAAGAGCCA
CAGTGTAGAACCTGAAGTTCTAAAGTATGAGGTCATTTACCTTTCCATTTATTAGCGGGGTGTT
GCAATTGATGATAAGCTAATAAACGTATGGAATGATTGGCACAAAGACAGACTCTTGGAGCAAA
ATTACCTAAATTGGAGATCCTTAAATTTTCCTATAGTCATGCAGTGACTTTTACATCAGAAGAC
TAGTAGGAATTCAGCCCATGTTAATTCTTTTATAAAGTGTGACATGAATCAACGTACTTTGCAT
TTTACTGCCTTACCTGAATCAGTCCTCTTTGGTTGGCAATAGATTTCTTTTTTCTAATAATCCC
ATGTTTGATTTAAATCTAGCTATTTAAGCACTTTTAAAAAGAAACCCAGAAGCACATTTTCCTG
CACAAACCAATACAGAGTTCAATGGTATTTCCTATATATTTGATTTGGGATTTTTTTTTTAAAC
TTTGTAAACCACAACTAGGAGACGTGGCACTTGTGCATTTTATGTGTGGTTTTAGTTTCTCTTG
ATTCTGTTGGTTAAGAGGGCAATAAAGATATCTGGTATTCTCGGTCACTTGGTTACCTTAAATA
AATGATTACCAGTGACTCGGATGACAAGTGACAAGGCAGAATTCTTCAACACGTTATGAAGCTC
CTTATGCCTAAGGCAAAATCTTGAATATATTATTGAATTCTAATTTCCTACTAGCTAGCAGACT
GACAGCTGCACATTCGGCATGCTTTGGGTTGGTTTTTTTTTTTTTTTTGGATTTTATTTTTCAT
TGCAGATTTATTTGGCAATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAA
CCATTTAAAAATC

hide sequence

RefSeq Acc Id:

XM_017596032 ⟹ XP_017451521

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	59,709,976 - 59,754,100 (+)	NCBI

Sequence:

show sequence

GCAGGGCACTAAATCAGACCTGGGAGCCTTACTAAGCTAGGAACTCTGGGTACCATATGGGTGG
TGCCTCTGGAACACGTGCCTAAATAAATCTACATGTACTATTCTCTTGCCTTCCTTCTTTAGAC
TGCAATGTAGTCCTTCAGTTATTTGTGAACGCACATCCCAGGTGGGATTGTGTTAAGTGTTGGG
GATTCAGGTGAGAGCAAGAATTTATTAAAAGACACTGGTGTCATTAGGTTCTCCGTCCCCTCGA
TCCTGGGGGTGCTGATCTGAATTAGATTTCAGTGTTAAGCAGAAACAAACAGAAAGACGCAGTA
AGTTAACCTAATGATGGGATACATGGTATCTACATGGTTACTTTAGCTTAGTTGGTTCTGAAAG
ATCAGTCTGACACATTTGGGATGCGACTTGAAACATGGTCGAGCCTGGGAAGTACAGCAGAAAC
TCAGGACGCTGAGTATCCACATTAGCGCAAGCACAGAAATATTTACGGGAAAGATTGAAATGAT
GATGGGAAGAAGCTGGCAGGCTCCACCACCGACTTCGGCAAATGGGGAGCGAAGGAGGGAGCAC
CAGTCTGGTGAGAAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCGCAGA
GCGAGAGCAACAGAGGTGAGGCTGCTAGGTGCGCACCCCTCACCTCCCCATCCGGGCCGCGCCC
AGGCCAGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTG
ACATCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGCTCCGTCAGCAATTGAAGT
GGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGA
TCAACCACTACCCACGGGTCAGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAG
GAAGAGATGGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTA
ATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAG
GAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGA
CTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGG
AGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCC
TTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTC
TCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAG
GAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGAAACTTCTCACAAAAACAGGTAACTTCT
GTACAATTCTCAGCTTTAGTGGACTATTTCTGTACA

hide sequence

RefSeq Acc Id:

XM_017596033 ⟹ XP_017451522

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	59,711,225 - 59,754,097 (+)	NCBI

Sequence:

show sequence

GGGGCGGGGGCAGCCCTCTCCCAGGCGGCGGTGGGGGCGGTGTCGCTGTTGCCCTTTTAAGCCG
CGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCGCAC
GCCCGCCCGCACGCCCGCCGAGGCCTCGAGCTCCTCGCCATTTTCCAGCCGCGCTCGGACGCGG
GTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGAGCGCGGCCCCGGCCGGCCCCGCGGGGCGGTC
GCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGATGAGGG
GAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAAC
CACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGC
CGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAACATCAC
GGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCA
GTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGCTCCGTCAGCAATTGAAGTGGTTGA
TATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACC
ACTACCCACGGGTCAGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAGGAAGAG
ATGGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGGGA
AAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAGAC
TCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGACTCATG
AAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGGAGCTAA
TAAATGACAGCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCCTTTGCA
CAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTT
AAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGT
ACGTGTTGGGCGGAGGAGCACTGTGTATGGAAACTTCTCACAAAAACAGGTAACTTCTGTACAA
TTCTCAGCTTTAGTGGACTATTTCTGT

hide sequence

RefSeq Acc Id:

XM_017596034 ⟹ XP_017451523

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	59,709,980 - 59,754,098 (+)	NCBI

Sequence:

show sequence

GGCACTAAATCAGACCTGGGAGCCTTACTAAGCTAGGAACTCTGGGTACCATATGGGTGGTGCC
TCTGGAACACGTGCCTAAATAAATCTACATGTACTATTCTCTTGCCTTCCTTCTTTAGACTGCA
ATGTAGTCCTTCAGTTATTTGTGAACGCACATCCCAGGTGGGATTGTGTTAAGTGTTGGGGATT
CAGGTGAGAGCAAGAATTTATTAAAAGACACTGGTGTCATTAGGTTCTCCGTCCCCTCGATCCT
GGGGGTGCTGATCTGAATTAGATTTCAGTGTTAAGCAGAAACAAACAGAAAGACGCAGTAAGTT
AACCTAATGATGGGATACATGGTATCTACATGGTTACTTTAGCTTAGTTGGTTCTGAAAGATCA
GTCTGACACATTTGGGATGCGACTTGAAACATGGTCGAGCCTGGGAAGTACAGCAGAAACTCAG
GACGCTGAGTATCCACATTAGCGCAAGCACAGAAATATTTACGGGAAAGATTGAAATGATGATG
GGAAGAAGCTGGCAGGCTCCACCACCGACTTCGGCAAATGGGGAGCGAAGGAGGGAGCACCAGT
CTGGTGAGAAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCGCAGAGCGA
GAGCAACAGAGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAA
TCTGACATCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGCTCCGTCAGCAATTG
AAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGC
TAGATCAACCACTACCCACGGGTCAGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGA
AGAGGAAGAGATGGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCT
ATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAA
TCAGGAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGA
TAGACTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCA
GTGGAGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATA
GTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAA
CTTCTCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTC
TCAGGAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGAAACTTCTCACAAAAACAGGTAAC
TTCTGTACAATTCTCAGCTTTAGTGGACTATTTCTGTA

hide sequence

RefSeq Acc Id:

XM_017596035 ⟹ XP_017451524

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	59,709,972 - 59,754,102 (+)	NCBI

Sequence:

show sequence

GACAGCAGGGCACTAAATCAGACCTGGGAGCCTTACTAAGCTAGGAACTCTGGGTACCATATGG
GTGGTGCCTCTGGAACACGTGCCTAAATAAATCTACATGTACTATTCTCTTGCCTTCCTTCTTT
AGACTGCAATGTAGTCCTTCAGTTATTTGTGAACGCACATCCCAGGTGGGATTGTGTTAAGTGT
TGGGGATTCAGGTGAGAGCAAGAATTTATTAAAAGACACTGGTGTCATTAGGTTCTCCGTCCCC
TCGATCCTGGGGGTGCTGATCTGAATTAGATTTCAGTGTTAAGCAGAAACAAACAGAAAGACGC
AGTAAGTTAACCTAATGATGGGATACATGGTATCTACATGGTTACTTTAGCTTAGTTGGTTCTG
AAAGATCAGTCTGACACATTTGGGATGCGACTTGAAACATGGTCGAGCCTGGGAAGTACAGCAG
AAACTCAGGACGCTGAGTATCCACATTAGCGCAAGCACAGAAATATTTACGGGAAAGATTGAAA
TGATGATGGGAAGAAGCTGGCAGGCTCCACCACCGACTTCGGCAAATGGGGAGCGAAGGAGGGA
GCACCAGTCTGGTGAGAAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCG
CAGAGCGAGAGCAACAGAGGTGAGGCTGCTAGGTGCGCACCCCTCACCTCCCCATCCGGGCCGC
GCCCAGGCCAGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAA
TCTGACATCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGAATGGCACAACGGAG
GAAGTAACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAAGATATAGAAGACTTGGATCACT
ACGAGATGAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGA
AAATTTGGCAATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTA
TCTGGGTCAGTACAAGCATCAGATAGACTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGA
GCTACAAGGCAGGGATCTATTCAGTGGAGCTAATAAATGACAGCTTATATGACTGGCACGTCAA
ACTACACAAGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAA
GGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTG
TTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGA
AACTTCTCACAAAAACAGGTAACTTCTGTACAATTCTCAGCTTTAGTGGACTATTTCTGTACAT
A

hide sequence

RefSeq Acc Id:

XM_017596036 ⟹ XP_017451525

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	59,711,222 - 59,754,099 (+)	NCBI

Sequence:

show sequence

GCCGGGGCGGGGGCAGCCCTCTCCCAGGCGGCGGTGGGGGCGGTGTCGCTGTTGCCCTTTTAAG
CCGCGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCG
CACGCCCGCCCGCACGCCCGCCGAGGCCTCGAGCTCCTCGCCATTTTCCAGCCGCGCTCGGACG
CGGGTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGAGCGCGGCCCCGGCCGGCCCCGCGGGGCG
GTCGCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGATGA
GGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAG
AACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGC
CGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAACAT
CACGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACA
TCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGAATGGCACAACGGAGGAAGTAA
CTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAAGATATAGAAGACTTGGATCACTACGAGAT
GAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTG
GCAATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGT
CAGTACAAGCATCAGATAGACTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAA
GGCAGGGATCTATTCAGTGGAGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTACAC
AAGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAG
AATATATTTTGCTTAACTTCTCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGT
GGTGTTACCTGTTCTCTCAGGAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGAAACTTCT
CACAAAAACAGGTAACTTCTGTACAATTCTCAGCTTTAGTGGACTATTTCTGTAC

hide sequence

RefSeq Acc Id:

XM_017596037 ⟹ XP_017451526

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	59,711,222 - 59,754,099 (+)	NCBI

Sequence:

show sequence

GCCGGGGCGGGGGCAGCCCTCTCCCAGGCGGCGGTGGGGGCGGTGTCGCTGTTGCCCTTTTAAG
CCGCGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCG
CACGCCCGCCCGCACGCCCGCCGAGGCCTCGAGCTCCTCGCCATTTTCCAGCCGCGCTCGGACG
CGGGTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGAGCGCGGCCCCGGCCGGCCCCGCGGGGCG
GTCGCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGATGA
GGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAG
AACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGC
CGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAACAT
CACGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAAGAT
ATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAG
ACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGA
CCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGACTCATGAAGGAGCTCAGG
GACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGGAGCTAATAAATGACAGCT
TATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCA
GATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGATAATTTC
CCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTACGTGTTGGGCG
GAGGAGCACTGTGTATGGAAACTTCTCACAAAAACAGGTAACTTCTGTACAATTCTCAGCTTTA
GTGGACTATTTCTGTAC

hide sequence

RefSeq Acc Id:

XM_017603628 ⟹ XP_017459117

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	8	55,002,485 - 55,063,447 (+)	NCBI

Sequence:

show sequence

CTAAATCAGACCTGGGAGCCTTACTAAGCTAGGAACTCTGGGTACCATATGGGTGGTGCCTCTG
GAACACGTGCCTAAATAAATCTACATGTACTATTCTCTTGCCTTCCTTCTTTAGACTGCAATGT
AGTCCTTCAGTTATTTGTGAACGCACATCCCAGGTGGGATTGTGTTAAGTGTTGGGGATTCAGG
TGAGAGCAAGAATTTATTAAAAGACACTGGTGTCATTAGGTTCTCCGTCCCCTCGATCCTGGGG
GTGCTGATCTGAATTAGATTTCAGTGTTAAGCAGAAACAAACAGAAAGACGCAGTAAGTTAACC
TAATGATGGGATACATGGTATCTACATGGTTACTTTAGCTTAGTTGGTTCTGAAAGATCAGTCT
GACACATTTGGGATGCGACTTGAAACATGGTCGAGCCTGGGAAGTACAGCAGAAACTCAGGACG
CTGAGTATCCACATTAGCGCAAGCACAGAAATATTTACGGGAAAGATTGAAATGATGATGGGAA
GAAGCTGGCAGGCTCCACCACCGACTTCGGCAAATGGGGAGCGAAGGAGGGAGCACCAGTCTGG
TGAGAAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCGCAGAGCGAGAGC
AACAGAGGTGAGGCTGCTAGGTGCGCACCCCTCACCTCCCCATCCGGGCCGCGCCCAGGCCAGG
AGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCAGT
CCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGCTCCGTCAGCAATTGAAGTGGTTGATA
TGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCAC
TACCCACGGGTCAGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAGGAAGAGAT
GGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGGGAAA
AAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAGACTC
AAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGACTCATGAA
GGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGGAGCTAATA
AATGACAGCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCCTTTGCACA
GTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAA
GGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAC
GTGTTGGGCGGAGGAGCACTGTGTATGGAACTTCTCACAAAACAGGGCTGGAGCAGTGCCTACT
CAATAGAATCTGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCTCGGGTACAGTT
TGGAGCAAATAAGAATCAGTATAATCTAGCACGAGCCCAGCAATCCTATAATTCCATTGTACAG
ATACATGAGAAAAATGGCTGGTACACACCTCCAAAGGAAGATGGCTAACTACATTGACATATGT
CTGGACCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGT
ATAACAGCAGTACCGAAGACATTAGCTAATAGATCATTTAGTGGATAATCTGTCAACTGACATC
CAGTTACAGTCTTTTCATTTTGCTCACTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTTACTG
AATTTTTCCTGATAAGTACACACAGTAGCCACTCCCTACCACCTCTTTCTTGAAAAGTGAAATC
TTTTAAGCAGGGAAGCTCAGCATCAGTTTACTGCAGCTGTGATTTTACAGTAACCTTTCTATAT
TGAGCCTATGGGGTATGAAGATATGCAAAATCCTGTTCGTTTAGAGCCAATAAAAGTTTAACTG
ATGGTCAATACTGGTTTAGAAATTTTAGGTCTTCTAAACCATAGCTTTTTCAGGTCTGAAATCA
TTTTATTGCCAAAATTATGACAGGAAGCCTCTTCATTAACTTGTTACATTTTTCCATGGTTGTG
TGAAGGTTTGAACTAGTCTGAAAGTCTGATTGTAATTGTGTCATGTTAGGTACAGCAAAGCCAG
GCAGCCACTTGTGACCGTAATTCCCACTGGGGCAGCAGGGTCTTGTTGAACTGAACCTGCTTCC
TGTTGGTTCAACATTTCTTGTGAGGAAGAGCCACAGTGTAGAACCTGAAGTTCTAAAGTATGAG
GTCATTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGATGATAAGCTAATAAACGTATGGA
ATGATTGGCACAAAGACAGACTCTTGGAGCAAAATTACCTAAATTGGAGATCCTTAAATTTTCC
TATAGTCATGCAGTGACTTTTACATCAGAAGACTAGTAGGAATTCAGCCCATGTTAATTCTTTT
ATAAAGTGTGACATGAATCAACGTACTTTGCATTTTACTGCCTTACCTGAATCAGTCCTCTTTG
GTTGGCAATAGATTTCTTTTTTCTAATAATCCCATGTTTGATTTAAATCTAGCTATTTAAGCAC
TTTTAAAAAGAAACCCAGAAGCACATTTTCCTGCACAAACCAATACAGAGTTCAATGGTATTTC
CTATATATTTGATTTGGGATTTTTTTTTTAAACTTTGTAAACCACAACTAGGAGACGTGGCACT
TGTGCATTTTATGTGTGGTTTTAGTTTCTCTTGATTCTGTTGGTTAAGAGGGCAATAAAGATAT
CTGGTATTCTCGGTCACTTGGTTACCTTAAATAAATGATTACCAGTGACTCGGATGACAAGTGA
CAAGGCAGAATTCTTCAACACGTTATGAAGCTCCTTATGCCTAAGGCAAAATCTTGAATATATT
ATTGAATTCTAATTTCCTACTAGCTAGCAGACTGACAGCTGCACATTCGGCATGCTTTGGGTTG
GTTTTTTTTTTTTTTTTGGATTTTATTTTTCATTGCAGATTTATTTGGCAATGTACAGTAAATT
TTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAAAATC

hide sequence

RefSeq Acc Id:

XM_017603629 ⟹ XP_017459118

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	8	55,002,489 - 55,063,447 (+)	NCBI

Sequence:

show sequence

ATCAGACCTGGGAGCCTTACTAAGCTAGGAACTCTGGGTACCATATGGGTGGTGCCTCTGGAAC
ACGTGCCTAAATAAATCTACATGTACTATTCTCTTGCCTTCCTTCTTTAGACTGCAATGTAGTC
CTTCAGTTATTTGTGAACGCACATCCCAGGTGGGATTGTGTTAAGTGTTGGGGATTCAGGTGAG
AGCAAGAATTTATTAAAAGACACTGGTGTCATTAGGTTCTCCGTCCCCTCGATCCTGGGGGTGC
TGATCTGAATTAGATTTCAGTGTTAAGCAGAAACAAACAGAAAGACGCAGTAAGTTAACCTAAT
GATGGGATACATGGTATCTACATGGTTACTTTAGCTTAGTTGGTTCTGAAAGATCAGTCTGACA
CATTTGGGATGCGACTTGAAACATGGTCGAGCCTGGGAAGTACAGCAGAAACTCAGGACGCTGA
GTATCCACATTAGCGCAAGCACAGAAATATTTACGGGAAAGATTGAAATGATGATGGGAAGAAG
CTGGCAGGCTCCACCACCGACTTCGGCAAATGGGGAGCGAAGGAGGGAGCACCAGTCTGGTGAG
AAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCGCAGAGCGAGAGCAACA
GAGGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACAT
CAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGCTCCGTCAGCAATTGAAGTGGTT
GATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAA
CCACTACCCACGGGTCAGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAGGAAG
AGATGGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGG
GAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAG
ACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGACTCA
TGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGGAGCT
AATAAATGACAGCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCCTTTG
CACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTT
TTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
GTACGTGTTGGGCGGAGGAGCACTGTGTATGGAACTTCTCACAAAACAGGGCTGGAGCAGTGCC
TACTCAATAGAATCTGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCTCGGGTAC
AGTTTGGAGCAAATAAGAATCAGTATAATCTAGCACGAGCCCAGCAATCCTATAATTCCATTGT
ACAGATACATGAGAAAAATGGCTGGTACACACCTCCAAAGGAAGATGGCTAACTACATTGACAT
ATGTCTGGACCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGC
CCGTATAACAGCAGTACCGAAGACATTAGCTAATAGATCATTTAGTGGATAATCTGTCAACTGA
CATCCAGTTACAGTCTTTTCATTTTGCTCACTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTT
ACTGAATTTTTCCTGATAAGTACACACAGTAGCCACTCCCTACCACCTCTTTCTTGAAAAGTGA
AATCTTTTAAGCAGGGAAGCTCAGCATCAGTTTACTGCAGCTGTGATTTTACAGTAACCTTTCT
ATATTGAGCCTATGGGGTATGAAGATATGCAAAATCCTGTTCGTTTAGAGCCAATAAAAGTTTA
ACTGATGGTCAATACTGGTTTAGAAATTTTAGGTCTTCTAAACCATAGCTTTTTCAGGTCTGAA
ATCATTTTATTGCCAAAATTATGACAGGAAGCCTCTTCATTAACTTGTTACATTTTTCCATGGT
TGTGTGAAGGTTTGAACTAGTCTGAAAGTCTGATTGTAATTGTGTCATGTTAGGTACAGCAAAG
CCAGGCAGCCACTTGTGACCGTAATTCCCACTGGGGCAGCAGGGTCTTGTTGAACTGAACCTGC
TTCCTGTTGGTTCAACATTTCTTGTGAGGAAGAGCCACAGTGTAGAACCTGAAGTTCTAAAGTA
TGAGGTCATTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGATGATAAGCTAATAAACGTA
TGGAATGATTGGCACAAAGACAGACTCTTGGAGCAAAATTACCTAAATTGGAGATCCTTAAATT
TTCCTATAGTCATGCAGTGACTTTTACATCAGAAGACTAGTAGGAATTCAGCCCATGTTAATTC
TTTTATAAAGTGTGACATGAATCAACGTACTTTGCATTTTACTGCCTTACCTGAATCAGTCCTC
TTTGGTTGGCAATAGATTTCTTTTTTCTAATAATCCCATGTTTGATTTAAATCTAGCTATTTAA
GCACTTTTAAAAAGAAACCCAGAAGCACATTTTCCTGCACAAACCAATACAGAGTTCAATGGTA
TTTCCTATATATTTGATTTGGGATTTTTTTTTTAAACTTTGTAAACCACAACTAGGAGACGTGG
CACTTGTGCATTTTATGTGTGGTTTTAGTTTCTCTTGATTCTGTTGGTTAAGAGGGCAATAAAG
ATATCTGGTATTCTCGGTCACTTGGTTACCTTAAATAAATGATTACCAGTGACTCGGATGACAA
GTGACAAGGCAGAATTCTTCAACACGTTATGAAGCTCCTTATGCCTAAGGCAAAATCTTGAATA
TATTATTGAATTCTAATTTCCTACTAGCTAGCAGACTGACAGCTGCACATTCGGCATGCTTTGG
GTTGGTTTTTTTTTTTTTTTTGGATTTTATTTTTCATTGCAGATTTATTTGGCAATGTACAGTA
AATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAAAATC

hide sequence

RefSeq Acc Id:

XM_017603630 ⟹ XP_017459119

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	8	55,002,483 - 55,063,447 (+)	NCBI

Sequence:

show sequence

CACTAAATCAGACCTGGGAGCCTTACTAAGCTAGGAACTCTGGGTACCATATGGGTGGTGCCTC
TGGAACACGTGCCTAAATAAATCTACATGTACTATTCTCTTGCCTTCCTTCTTTAGACTGCAAT
GTAGTCCTTCAGTTATTTGTGAACGCACATCCCAGGTGGGATTGTGTTAAGTGTTGGGGATTCA
GGTGAGAGCAAGAATTTATTAAAAGACACTGGTGTCATTAGGTTCTCCGTCCCCTCGATCCTGG
GGGTGCTGATCTGAATTAGATTTCAGTGTTAAGCAGAAACAAACAGAAAGACGCAGTAAGTTAA
CCTAATGATGGGATACATGGTATCTACATGGTTACTTTAGCTTAGTTGGTTCTGAAAGATCAGT
CTGACACATTTGGGATGCGACTTGAAACATGGTCGAGCCTGGGAAGTACAGCAGAAACTCAGGA
CGCTGAGTATCCACATTAGCGCAAGCACAGAAATATTTACGGGAAAGATTGAAATGATGATGGG
AAGAAGCTGGCAGGCTCCACCACCGACTTCGGCAAATGGGGAGCGAAGGAGGGAGCACCAGTCT
GGTGAGAAGGACCTTTCGGGAGCCACACTTAGAAAAGTGGTGGGTGGTTCAGCGCAGAGCGAGA
GCAACAGAGGTGAGGCTGCTAGGTGCGCACCCCTCACCTCCCCATCCGGGCCGCGCCCAGGCCA
GGAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCA
GTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCGAATGGCACAACGGAGGAAGTAACTT
CAGAAGAGGAGGAAGAGGAAGAGATGGCTGAAGATATAGAAGACTTGGATCACTACGAGATGAA
GGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCA
ATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGGTGCGGTATCTGGGTCAG
TACAAGCATCAGATAGACTCATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGC
AGGGATCTATTCAGTGGAGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTACACAAG
GTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAAT
ATATTTTGCTTAACTTCTCTTTTAAGGATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGT
GTTACCTGTTCTCTCAGGAGGGTACGTGTTGGGCGGAGGAGCACTGTGTATGGAACTTCTCACA
AAACAGGGCTGGAGCAGTGCCTACTCAATAGAATCTGTCATCATGCAGATCAATGCCACCTTAG
TGAAAGGCAAAGCTCGGGTACAGTTTGGAGCAAATAAGAATCAGTATAATCTAGCACGAGCCCA
GCAATCCTATAATTCCATTGTACAGATACATGAGAAAAATGGCTGGTACACACCTCCAAAGGAA
GATGGCTAACTACATTGACATATGTCTGGACCAATGTTGCTTTAAAGAAAATCGTTCCAACGTA
CAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGACATTAGCTAATAGATCATTT
AGTGGATAATCTGTCAACTGACATCCAGTTACAGTCTTTTCATTTTGCTCACTTTAGGTATCTT
GGACTGAGCAGTGGGGCCTTTACTGAATTTTTCCTGATAAGTACACACAGTAGCCACTCCCTAC
CACCTCTTTCTTGAAAAGTGAAATCTTTTAAGCAGGGAAGCTCAGCATCAGTTTACTGCAGCTG
TGATTTTACAGTAACCTTTCTATATTGAGCCTATGGGGTATGAAGATATGCAAAATCCTGTTCG
TTTAGAGCCAATAAAAGTTTAACTGATGGTCAATACTGGTTTAGAAATTTTAGGTCTTCTAAAC
CATAGCTTTTTCAGGTCTGAAATCATTTTATTGCCAAAATTATGACAGGAAGCCTCTTCATTAA
CTTGTTACATTTTTCCATGGTTGTGTGAAGGTTTGAACTAGTCTGAAAGTCTGATTGTAATTGT
GTCATGTTAGGTACAGCAAAGCCAGGCAGCCACTTGTGACCGTAATTCCCACTGGGGCAGCAGG
GTCTTGTTGAACTGAACCTGCTTCCTGTTGGTTCAACATTTCTTGTGAGGAAGAGCCACAGTGT
AGAACCTGAAGTTCTAAAGTATGAGGTCATTTACCTTTCCATTTATTAGCGGGGTGTTGCAATT
GATGATAAGCTAATAAACGTATGGAATGATTGGCACAAAGACAGACTCTTGGAGCAAAATTACC
TAAATTGGAGATCCTTAAATTTTCCTATAGTCATGCAGTGACTTTTACATCAGAAGACTAGTAG
GAATTCAGCCCATGTTAATTCTTTTATAAAGTGTGACATGAATCAACGTACTTTGCATTTTACT
GCCTTACCTGAATCAGTCCTCTTTGGTTGGCAATAGATTTCTTTTTTCTAATAATCCCATGTTT
GATTTAAATCTAGCTATTTAAGCACTTTTAAAAAGAAACCCAGAAGCACATTTTCCTGCACAAA
CCAATACAGAGTTCAATGGTATTTCCTATATATTTGATTTGGGATTTTTTTTTTAAACTTTGTA
AACCACAACTAGGAGACGTGGCACTTGTGCATTTTATGTGTGGTTTTAGTTTCTCTTGATTCTG
TTGGTTAAGAGGGCAATAAAGATATCTGGTATTCTCGGTCACTTGGTTACCTTAAATAAATGAT
TACCAGTGACTCGGATGACAAGTGACAAGGCAGAATTCTTCAACACGTTATGAAGCTCCTTATG
CCTAAGGCAAAATCTTGAATATATTATTGAATTCTAATTTCCTACTAGCTAGCAGACTGACAGC
TGCACATTCGGCATGCTTTGGGTTGGTTTTTTTTTTTTTTTTGGATTTTATTTTTCATTGCAGA
TTTATTTGGCAATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTT
AAAAATC

hide sequence

RefSeq Acc Id:

XM_017603631 ⟹ XP_017459120

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	8	55,003,723 - 55,063,447 (+)	NCBI

Sequence:

show sequence

GCGGTCGCGGCCGTGACAGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCCGGAGA
TGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGAC
AAGAACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGG
TGCCGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAA
CATCACGAATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAA
GATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAG
AAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAGACTCAAAGGCA
AGACCATTTAAATGGTGCGGTATCTGGGTCAGTACAAGCATCAGATAGACTCATGAAGGAGCTC
AGGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATCTATTCAGTGGAGCTAATAAATGACA
GCTTATATGACTGGCACGTCAAACTACACAAGGTTGACTCTGATAGTCCTTTGCACAGTGATCT
TCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGATAAT
TTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTACGTGTTGG
GCGGAGGAGCACTGTGTATGGAACTTCTCACAAAACAGGGCTGGAGCAGTGCCTACTCAATAGA
ATCTGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCTCGGGTACAGTTTGGAGCA
AATAAGAATCAGTATAATCTAGCACGAGCCCAGCAATCCTATAATTCCATTGTACAGATACATG
AGAAAAATGGCTGGTACACACCTCCAAAGGAAGATGGCTAACTACATTGACATATGTCTGGACC
AATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAG
CAGTACCGAAGACATTAGCTAATAGATCATTTAGTGGATAATCTGTCAACTGACATCCAGTTAC
AGTCTTTTCATTTTGCTCACTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTTACTGAATTTTT
CCTGATAAGTACACACAGTAGCCACTCCCTACCACCTCTTTCTTGAAAAGTGAAATCTTTTAAG
CAGGGAAGCTCAGCATCAGTTTACTGCAGCTGTGATTTTACAGTAACCTTTCTATATTGAGCCT
ATGGGGTATGAAGATATGCAAAATCCTGTTCGTTTAGAGCCAATAAAAGTTTAACTGATGGTCA
ATACTGGTTTAGAAATTTTAGGTCTTCTAAACCATAGCTTTTTCAGGTCTGAAATCATTTTATT
GCCAAAATTATGACAGGAAGCCTCTTCATTAACTTGTTACATTTTTCCATGGTTGTGTGAAGGT
TTGAACTAGTCTGAAAGTCTGATTGTAATTGTGTCATGTTAGGTACAGCAAAGCCAGGCAGCCA
CTTGTGACCGTAATTCCCACTGGGGCAGCAGGGTCTTGTTGAACTGAACCTGCTTCCTGTTGGT
TCAACATTTCTTGTGAGGAAGAGCCACAGTGTAGAACCTGAAGTTCTAAAGTATGAGGTCATTT
ACCTTTCCATTTATTAGCGGGGTGTTGCAATTGATGATAAGCTAATAAACGTATGGAATGATTG
GCACAAAGACAGACTCTTGGAGCAAAATTACCTAAATTGGAGATCCTTAAATTTTCCTATAGTC
ATGCAGTGACTTTTACATCAGAAGACTAGTAGGAATTCAGCCCATGTTAATTCTTTTATAAAGT
GTGACATGAATCAACGTACTTTGCATTTTACTGCCTTACCTGAATCAGTCCTCTTTGGTTGGCA
ATAGATTTCTTTTTTCTAATAATCCCATGTTTGATTTAAATCTAGCTATTTAAGCACTTTTAAA
AAGAAACCCAGAAGCACATTTTCCTGCACAAACCAATACAGAGTTCAATGGTATTTCCTATATA
TTTGATTTGGGATTTTTTTTTTAAACTTTGTAAACCACAACTAGGAGACGTGGCACTTGTGCAT
TTTATGTGTGGTTTTAGTTTCTCTTGATTCTGTTGGTTAAGAGGGCAATAAAGATATCTGGTAT
TCTCGGTCACTTGGTTACCTTAAATAAATGATTACCAGTGACTCGGATGACAAGTGACAAGGCA
GAATTCTTCAACACGTTATGAAGCTCCTTATGCCTAAGGCAAAATCTTGAATATATTATTGAAT
TCTAATTTCCTACTAGCTAGCAGACTGACAGCTGCACATTCGGCATGCTTTGGGTTGGTTTTTT
TTTTTTTTTTGGATTTTATTTTTCATTGCAGATTTATTTGGCAATGTACAGTAAATTTTGTAAA
CTTGCATCAAGTTTATGAATAAAGAACCATTTAAAAATC

hide sequence

Protein Sequences


Protein RefSeqs	XP_001072896	(Get FASTA)	NCBI Sequence Viewer
	XP_006226467	(Get FASTA)	NCBI Sequence Viewer
	XP_017451521	(Get FASTA)	NCBI Sequence Viewer
	XP_017451522	(Get FASTA)	NCBI Sequence Viewer
	XP_017451523	(Get FASTA)	NCBI Sequence Viewer
	XP_017451524	(Get FASTA)	NCBI Sequence Viewer
	XP_017451525	(Get FASTA)	NCBI Sequence Viewer
	XP_017451526	(Get FASTA)	NCBI Sequence Viewer
	XP_017459117	(Get FASTA)	NCBI Sequence Viewer
	XP_017459118	(Get FASTA)	NCBI Sequence Viewer
	XP_017459119	(Get FASTA)	NCBI Sequence Viewer
	XP_017459120	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95564	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_001072896 ⟸ XM_001072896

- Peptide Label:

isoform X8

- Sequence:

show sequence

MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITE
SYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQLKWLICDLCRLYNLPKHLDVEMLDQPL
PTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQ
RQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHS
DLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYS
IESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG

hide sequence

RefSeq Acc Id:

XP_006226467 ⟸ XM_006226405

- Peptide Label:

isoform X11

- Sequence:

show sequence

MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITE
SYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKE
EEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAG
IYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL
PVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQ
SYNSIVQIHEKNGWYTPPKEDG

hide sequence

RefSeq Acc Id:

XP_017459119 ⟸ XM_017603630

- Peptide Label:

isoform X10

- Sequence:

show sequence

MMMGRSWQAPPPTSANGERRREHQSGEKDLSGATLRKVVGGSAQSESNRGEAARCAPLTSPSGP
RPGQESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSNGTTEEVTSEEEEEEEMAEDIEDLDH
YEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQ
SYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF
VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL
ARAQQSYNSIVQIHEKNGWYTPPKEDG

hide sequence

RefSeq Acc Id:

XP_017459117 ⟸ XM_017603628

- Peptide Label:

isoform X7

- Sequence:

show sequence

MMMGRSWQAPPPTSANGERRREHQSGEKDLSGATLRKVVGGSAQSESNRGEAARCAPLTSPSGP
RPGQESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQLKWLICDLCRLYNLPKHLDVEM
LDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEK
IRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSD
SPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGW
SSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG

hide sequence

RefSeq Acc Id:

XP_017459118 ⟸ XM_017603629

- Peptide Label:

isoform X9

- Sequence:

show sequence

MGSEGGSTSLVRRTFREPHLEKWWVVQRRARATEESYPSSSPIWFVDSDDPNLTSVLERLEDTK
NNSSLRQQLKWLICDLCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLD
HYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRS
QSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP
FVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYN
LARAQQSYNSIVQIHEKNGWYTPPKEDG

hide sequence

RefSeq Acc Id:

XP_017459120 ⟸ XM_017603631

- Peptide Label:

isoform X12

- Sequence:

show sequence

MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITN
GTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHL
NGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQIL
KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI
MQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG

hide sequence

RefSeq Acc Id:

XP_017451524 ⟸ XM_017596035

- Peptide Label:

isoform X4

- Sequence:

show sequence

MMMGRSWQAPPPTSANGERRREHQSGEKDLSGATLRKVVGGSAQSESNRGEAARCAPLTSPSGP
RPGQESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSNGTTEEVTSEEEEEEEMAEDIEDLDH
YEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQ
SYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF
VRVVLPVLSGGYVLGGGALCMETSHKNR

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RefSeq Acc Id:

XP_017451521 ⟸ XM_017596032

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMMGRSWQAPPPTSANGERRREHQSGEKDLSGATLRKVVGGSAQSESNRGEAARCAPLTSPSGP
RPGQESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQLKWLICDLCRLYNLPKHLDVEM
LDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEK
IRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSD
SPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMETSHKNR

hide sequence

RefSeq Acc Id:

XP_017451523 ⟸ XM_017596034

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGSEGGSTSLVRRTFREPHLEKWWVVQRRARATEESYPSSSPIWFVDSDDPNLTSVLERLEDTK
NNSSLRQQLKWLICDLCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLD
HYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRS
QSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP
FVRVVLPVLSGGYVLGGGALCMETSHKNR

hide sequence

RefSeq Acc Id:

XP_017451525 ⟸ XM_017596036

- Peptide Label:

isoform X5

- Sequence:

show sequence

MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITE
SYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKE
EEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAG
IYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL
PVLSGGYVLGGGALCMETSHKNR

hide sequence

RefSeq Acc Id:

XP_017451526 ⟸ XM_017596037

- Peptide Label:

isoform X6

- Sequence:

show sequence

MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITN
GTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHL
NGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQIL
KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMETSHKNR

hide sequence

RefSeq Acc Id:

XP_017451522 ⟸ XM_017596033

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITE
SYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQLKWLICDLCRLYNLPKHLDVEMLDQPL
PTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQ
RQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHS
DLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMETSHKNR

hide sequence

RefSeq Acc Id:

ENSRNOP00000019539 ⟸ ENSRNOT00000019539

Protein Domains

UBC core

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307680	AgrOrtholog
Ensembl Genes	ENSRNOG00000014529	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000019539	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019539	UniProtKB/TrEMBL
Gene3D-CATH	3.10.110.10	UniProtKB/TrEMBL
InterPro	UBQ-conjugat_E2	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
NCBI Gene	363065	ENTREZGENE
PhenoGen	Ube2q2	PhenoGen
PROSITE	UBIQUITIN_CONJUGAT_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54495	UniProtKB/TrEMBL
UniProt	D4A1G2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-05-25	Ube2q2	ubiquitin-conjugating enzyme E2Q family member 2	Ube2q2	ubiquitin-conjugating enzyme E2Q (putative) 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ube2q2	ubiquitin-conjugating enzyme E2Q (putative) 2	Ube2q2_predicted	ubiquitin-conjugating enzyme E2Q (putative) 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ube2q2_predicted	ubiquitin-conjugating enzyme E2Q (putative) 2 (predicted)	RGD1307680_predicted	similar to RIKEN cDNA 3010021M21 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1307680_predicted	similar to RIKEN cDNA 3010021M21 (predicted)	LOC363065_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363065_predicted	similar to RIKEN cDNA 3010021M21 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)