Csnk1g1 (casein kinase 1, gamma 1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Csnk1g1 (casein kinase 1, gamma 1) Rattus norvegicus

Analyze

Symbol:

Csnk1g1

Name:

casein kinase 1, gamma 1

RGD ID:

621404

Description:

Enables protein serine/threonine kinase activity. Involved in protein autophosphorylation. Predicted to be located in cytosol. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Orthologous to human CSNK1G1 (casein kinase 1 gamma 1); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; Wnt signaling, canonical pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

casein kinase 1 gamma 1; casein kinase I; casein kinase I isoform gamma-1; CKI-gamma 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSNK1G1 (casein kinase 1 gamma 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB
Mus musculus (house mouse):	Csnk1g1 (casein kinase 1, gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Csnk1g1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Csnk1g1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Csnk1g1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EXOC3 (exocyst complex component 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CSNK1G1 (casein kinase 1 gamma 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Csnk1g1 (casein kinase 1, gamma 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	csnk1g1 (casein kinase 1, gamma 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YCK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	csnk-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gish	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	csnk1g1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	csnk1g2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,439,864 - 66,572,826 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	71,966,714 - 72,075,691 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	70,239,778 - 70,348,757 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	68,109,042 - 68,218,077 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	71,547,468 - 71,679,666 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	71,261,296 - 71,358,274 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,193,231 - 70,301,592 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	70,212,284 - 70,320,646 (+)	NCBI
Celera	8	65,843,343 - 65,952,588 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

nemaline myopathy 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

cisplatin (ISO)

copper(II) chloride (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dichlorine (EXP)

endosulfan (EXP)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fipronil (EXP)

flavonoids (EXP)

folic acid (ISO)

formaldehyde (ISO)

genistein (EXP)

gentamycin (EXP)

inulin (ISO)

leflunomide (ISO)

methyl methanesulfonate (ISO)

ozone (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

rifampicin (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

torcetrapib (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

urethane (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IBA)

peptidyl-serine phosphorylation (IBA,ISO)

positive regulation of canonical Wnt signaling pathway (IBA)

protein autophosphorylation (IDA)

protein phosphorylation (IDA,IEA)

signal transduction (IBA)

Wnt signaling pathway (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (ISO)

nucleus (IBA)

plasma membrane (IBA)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IBA,IDA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (IEA,ISO)

p53 signaling pathway (ISO)

Wnt signaling, canonical pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
3.	Wnt signalling and its impact on development and cancer.	Klaus A and Birchmeier W, Nat Rev Cancer. 2008 May;8(5):387-98.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11.	Casein kinase I gamma subfamily. Molecular cloning, expression, and characterization of three mammalian isoforms and complementation of defects in the Saccharomyces cerevisiae YCK genes.	Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24.

Additional References at PubMed

PMID:15489334	PMID:22871113	PMID:25500533

Genomics

Comparative Map Data

Csnk1g1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,439,864 - 66,572,826 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	71,966,714 - 72,075,691 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	70,239,778 - 70,348,757 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	68,109,042 - 68,218,077 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	71,547,468 - 71,679,666 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	71,261,296 - 71,358,274 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,193,231 - 70,301,592 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	70,212,284 - 70,320,646 (+)	NCBI
Celera	8	65,843,343 - 65,952,588 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

CSNK1G1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	64,165,525 - 64,356,173 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	15	64,165,525 - 64,356,173 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	64,457,724 - 64,648,372 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	62,244,769 - 62,435,495 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	62,250,880 - 62,379,879	NCBI
Celera	15	41,336,661 - 41,526,451 (-)	NCBI		Celera
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	41,282,388 - 41,472,528 (-)	NCBI		HuRef
CHM1_1	15	64,577,245 - 64,767,981 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	61,972,701 - 62,165,717 (-)	NCBI		T2T-CHM13v2.0

Csnk1g1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	65,816,235 - 65,952,297 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	65,816,206 - 65,952,297 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	65,908,968 - 66,045,015 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	65,908,924 - 66,045,015 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	65,756,817 - 65,892,821 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	65,707,016 - 65,843,020 (+)	NCBI		MGSCv36	mm8
Celera	9	63,147,988 - 63,280,802 (+)	NCBI		Celera
Cytogenetic Map	9	C	NCBI

Csnk1g1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,102,257 - 11,233,601 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,088,601 - 11,239,227 (+)	NCBI	ChiLan1.0	ChiLan1.0

CSNK1G1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	15	57,595,474 - 57,798,998 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	43,117,845 - 43,302,134 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	61,410,414 - 61,594,180 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	61,410,414 - 61,594,180 (-)	Ensembl	panpan1.1		panPan2

CSNK1G1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	28,661,726 - 28,832,193 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	28,654,200 - 28,788,801 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	28,581,269 - 28,750,826 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	28,838,185 - 29,007,849 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	28,838,575 - 29,007,582 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	28,772,289 - 28,942,374 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	28,834,575 - 29,004,312 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	29,073,782 - 29,243,814 (-)	NCBI		UU_Cfam_GSD_1.0

Csnk1g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	106,794,274 - 106,947,520 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	24,645,762 - 24,795,414 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936471	24,642,337 - 24,795,633 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSNK1G1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,690,065 - 107,884,045 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	107,690,049 - 107,884,054 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	118,712,242 - 118,792,181 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSNK1G1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,164,948 - 19,374,016 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	19,164,986 - 19,372,834 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	122,020,590 - 122,233,227 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csnk1g1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	8,286,571 - 8,395,282 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	8,210,988 - 8,400,065 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Csnk1g1
353 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	134
Count of miRNA genes:	102
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000042369
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	50095249	82460899	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	50095249	82460899	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	50095249	82460899	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat

Markers in Region

RH132202

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	8	71,248,651 - 71,248,854	NCBI	Rnor5.0
Rnor_5.0	8	71,229,722 - 71,229,925	NCBI	Rnor5.0
RGSC_v3.4	8	70,203,320 - 70,203,522	UniSTS	RGSC3.4
Celera	18	37,122,060 - 37,122,262	UniSTS
Celera	8	65,853,424 - 65,853,626	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			12		15				10	2	13	8
Low	3	43	45	41	4	41	8	11	64	33	28	3	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U22296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000042369 ⟹ ENSRNOP00000048274

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	66,453,503 - 66,562,546 (+)	Ensembl
Rnor_6.0 Ensembl	8	71,547,468 - 71,678,214 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090096 ⟹ ENSRNOP00000074148

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	66,439,864 - 66,562,552 (+)	Ensembl
Rnor_6.0 Ensembl	8	71,591,360 - 71,679,666 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096791 ⟹ ENSRNOP00000082082

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	66,439,864 - 66,572,826 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096879 ⟹ ENSRNOP00000090680

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	66,439,864 - 66,572,826 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116171 ⟹ ENSRNOP00000082115

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	66,439,864 - 66,572,204 (+)	Ensembl

RefSeq Acc Id:

NM_022288 ⟹ NP_071624

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,453,503 - 66,562,546 (+)	NCBI
Rnor_6.0	8	71,569,180 - 71,678,214 (+)	NCBI
Rnor_5.0	8	71,261,296 - 71,358,274 (+)	NCBI
RGSC_v3.4	8	70,193,231 - 70,301,592 (+)	RGD
Celera	8	65,843,343 - 65,952,588 (+)	RGD

Sequence:

show sequence

CAGGCCATTGGGATTTGTGTGGAGCAGGAGGACAGGTGTGAGGCCAGTACACCTTTGACTCAAT
GGGGCTTAATTGGTTACAAAATGTCCTCCTATGCATGAGATCTACAGACTATATGTTCTTCAAG
AACTGATCAGTGGTTTCACCTTCTGGAAGAACATTACAAGCATAAATATGGTGCCAAAACTCCT
CATTCTCTGACTGTGGTGTACTGGACCTACTTTTGTGTTGAAGAGAACTATACACGCTGAGGTC
ACTCATTGTTCAGAGACTGTCGTGTAGGAACATGGACCATTCTAATAGAGAAAAGGATGATAGA
CAACGGACAACTAAAACCATGGCACAAAGGAATACACACTGTTCCCGACCATCTGGCACTTCAA
CATCCTCTGGGGTTCTCATGGTGGGACCCAACTTCAGGGTTGGCAAGAAGATAGGGTGTGGGAA
CTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACACCAATGAATATGTAGCCATTAAACTGGAA
CCAATAAAATCACGTGCTCCACAACTTCATTTAGAGTACAGGTTTTATAAACAGCTCGGCAGTG
CAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGACCATGTGGGAAGTACAATGCCATGGTGCT
GGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTGACCTCTGTGACCGAACGTTTACTTTGAAG
ACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCGAATGGAGTATGTACACTCAAAGAATCTCA
TTTACCGAGATGTCAAACCAGAGAACTTCTTAATTGGCCGACAAGGCAATAAGAAAGAGCATGT
AATACACATTATAGATTTTGGACTGGCCAAGGAATACATTGATCCTGAAACCAAAAAACACATA
CCTTACAGAGAGCACAAAAGCTTAACTGGAACTGCGCGATACATGTCTATCAACACACATCTAG
GCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCCCTGGGCCATATGTTCATGTACTTCCTTCG
AGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATACATTAAAAGAGAGATATCAGAAAATTGGT
GATACCAAAAGGAGTACTCCCATCGAAGCTCTCTGTGAGAACTTTCCAGAGGAGATGATGACCT
ACCTTCGATATGTCAGGAGATTAGACTTCTTTGAAAAACCTGATTATGAGTATTTACGGAACCT
CTTCACAGATCTGTTTGAACGGAAAGGCTATACTTTTGACTATGCCTATGATTGGGTTGGAAGG
CCTATTCCTACTCCAGTAGGATCAGTTCATGTAGATTCTGGTGCATCTGCAATAACTCGAGAAA
GCCACACACACAGGGATCGACCATCACAACAACAGCCTCTTAGAAATCAGCCAAGATCTTTAAC
AGCAGAGTGGTTTGTGCTGGCTCCCCTTTCCCACCCTCCAGCACCCACATAAGCAGGAGTCATG
TGCTGGCAGTGAAAGCAGGTGGCAGGAGCGGCTGCACAACAAGACAAGCCTGATCGGGTCCACA
CTAACCAGATGACAGGAGTGGGAGACAGAGCCTTCATTGACAGTTCGGGACCATCAGTGAGCAG
TGGGATGACAGTGAACCTGAAATAAAGGCCATTGAAATAAGACTTGTA

hide sequence

RefSeq Acc Id:

XM_008766332 ⟹ XP_008764554

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGC
AGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGGT
GGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTGCACCG
ATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAAGTGCTGCTGTTTCTTTAAGAGGA
AAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCCTCCCAGGAGTCCTCAAGTCCTGGG
GACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCTCATTGGAAGGGACTCCTCTGTGGG
GGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGCCCCCAGAAGGAGCCAGTGCAGGCA
GCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGAGCTCTGAGCGGGTCCAGAGCTGCT
GCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCTCTTCCCATTGTTTACAGTGAAGGT
GTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTTCTCTTCCTTTACTCCTGGCTCTTG
CACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCTAAAGGCTCTGTCAAGAAGCTGGTG
GTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCTGGAGAACGTCTCCACGTCCCAGAT
GTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAACCCCTCAGCCCAGCTGGCCACAGG
GTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCTGTGAAGTTACACTCTGG
GACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTGTATTGGCATTCTTAGCTTTTTTGA
CAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCTGTGGTTCTGAGCAAAGGAGAAGAA
ACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTTTTATTTTGTAAACAACATGGCAGA
TGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTCTTTTTTCAAGGGGGATGGGCCAGC
CAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTTGATGGAAAGAGTCTGATTTGCAGC
ACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGTAAATACTCAGGTTGGCAAGGAAAC
ATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAAGTCCCCACCAGAGCCCCTTGACCT
AATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTGGGATGAGCACCGAGCCAGACTGTG
ACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAACAACAACAACAAAACAAAATTTCT
GTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATGTGACTTTCTGTTGACTCGGGGAAC
AAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAGTGGACAAAAGAAGGCACCAAATTT
GCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCTAGGGCCATGAAAAGAAAAATAAAT
ATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_008766334 ⟹ XP_008764556

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,563,887 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,678,209 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGC
AGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGCC
AAGATCTTTAACAGCAGAGTGGTTTGTGCTGGCTCCCCTTTCCCACCCTCCAGCACCCACATAA
GCAGGAGTCATGTGCTGGCAGTGAAAGCAGGTGGCAGGAGCGGCTGCACAACAAGACAAGCCTG
ATCGGGTCCACACTAACCAGATGACAGGAGTGGGAGACAGAGCCTTCATTGACAGTTCGGGGAC
CATCAGTGAGCAGTGGGATGACAGTGAACCTGAAATAAAGGCCATTGAAATAAGA

hide sequence

RefSeq Acc Id:

XM_008766335 ⟹ XP_008764557

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAG
CTCACTCCAGTGCACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAAGTGCTG
CTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCCTCCCAGG
AGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCTCATTGGA
AGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGCCCCCAGA
AGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGAGCTCTGA
GCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCTCTTCCCA
TTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTTCTCTTCC
TTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCTAAAGGCT
CTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCTGGAGAAC
GTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAACCCCTCA
GCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCT
GTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTGTATTGGC
ATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCTGTGGTTC
TGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTTTTATTTT
GTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTCTTTTTTC
AAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTTGATGGAA
AGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGTAAATACT
CAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAAGTCCCCA
CCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTGGGATGAG
CACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAACAACAAC
AACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATGTGACTTT
CTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAGTGGACAA
AAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCTAGGGCCA
TGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595886 ⟹ XP_017451375

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGC
AGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGGT
GGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTGCACCG
ATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCTGAAAATGCTCAACCTGT
GGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCC
TCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCT
CATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGC
CCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGA
GCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCT
CTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTT
CTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCT
AAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCT
GGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAA
CCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCT
CCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTG
TATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCT
GTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTT
TTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTC
TTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTT
GATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGT
AAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAA
GTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTG
GGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAA
CAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATG
TGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAG
TGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCT
AGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595890 ⟹ XP_017451379

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,440,042 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,736 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GGCGCGGGCCCGTCCGTGGAGGATTGCGGGGGCGGGACAGAAGGACCAGGGTCCCTGCATGCGA
AGAGTTGCGGGTTAGACCCCGTCGTAGGAGGCGCCCTTTCTGAAGCCAATGCAGACCGGGAGTT
TCCCACCTGGAGTGCCCGCTCTGAAAAGAAGGGGGAGCATCCTCCAGGACCGAAATCAGGGAGG
ACAGGTGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTA
TGCATGAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGA
ACATTAGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTAC
TTTTGTGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAA
CATGGACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGG
AATACACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCA
ACTTCAGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCT
CTACACCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCAT
TTAGAGTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACT
TTGGACCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTT
GTTTGACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTT
TCTCGAATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCT
TGATTGGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAA
GGAATACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGA
ACTGCGCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGG
AAGCCCTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGC
TGATACATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCT
CTCTGTGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCT
TTGAAAAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTA
TACTTTTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCAT
GTAGATTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAAC
AACAGCCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAG
CCGGCAGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTA
CAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTG
CACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCTGAAAATGCTCAA
CCTGTGGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCA
GTGCCTCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCA
TTTCTCATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACA
GATGCCCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTG
TCTGAGCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTG
ACTCTCTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTT
CCCTTCTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACT
AAGCTAAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCT
GGGCTGGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTG
GGTAACCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCC
TCCCTCCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCC
CTGTGTATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACA
AGCCTGTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGT
TTTTTTTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTT
TTTTCTTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACA
TTCTTGATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCC
TGAGTAAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGA
AAAAAGTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGC
ACTTGGGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATA
CTTAACAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAG
CCATGTGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCC
AGTAGTGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGC
ATCCTAGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595891 ⟹ XP_017451380

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAG
CTCACTCCAGTGCACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCT
GAAAATGCTCAACCTGTGGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGA
CACAAGTGACCAGTGCCTCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTG
CAGCTCCTGCCATTTCTCATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAA
AAGAAGAAAACAGATGCCCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGG
CAATCCCCTCTGTCTGAGCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGG
GCTATCTGGTTGACTCTCTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGAC
TACTGTTCTCTTCCCTTCTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGC
ATAGAAACTACTAAGCTAAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAA
GACGACAGCCCTGGGCTGGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTC
CTTCTGTGCCTGGGTAACCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCC
TCCCTCCCTCCCTCCCTCCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGC
AGTCTACTGTCCCTGTGTATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGC
TGTAGCAAAACAAGCCTGTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGT
TTGGGGGTTTGTTTTTTTTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATT
GGGGGGTTACTTTTTTCTTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGG
GTCCAGAGGACATTCTTGATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAAC
TCTGCGTCATCCTGAGTAAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTT
CTCTGCTGCAGAAAAAAGTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCC
CAGCTCCTGAGCACTTGGGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTC
AGAGAGGAGATACTTAACAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTT
CCTACTAGATAGCCATGTGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCAC
CACCATATTGCCAGTAGTGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGC
TCAGGATGCAGCATCCTAGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595892 ⟹ XP_017451381

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,563,887 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,678,209 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGCCAAGATCTTTAACAGCAGAGTGGTTTGTGCTGGCTCCCCTTTCCCACC
CTCCAGCACCCACATAAGCAGGAGTCATGTGCTGGCAGTGAAAGCAGGTGGCAGGAGCGGCTGC
ACAACAAGACAAGCCTGATCGGGTCCACACTAACCAGATGACAGGAGTGGGAGACAGAGCCTTC
ATTGACAGTTCGGGGACCATCAGTGAGCAGTGGGATGACAGTGAACCTGAAATAAAGGCCATTG
AAATAAGA

hide sequence

RefSeq Acc Id:

XM_039082074 ⟹ XP_038938002

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,784 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082075 ⟹ XP_038938003

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,784 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082077 ⟹ XP_038938005

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,784 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082078 ⟹ XP_038938006

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,486,040 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082079 ⟹ XP_038938007

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,486,045 - 66,577,247 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_071624	(Get FASTA)	NCBI Sequence Viewer
	XP_008764554	(Get FASTA)	NCBI Sequence Viewer
	XP_008764556	(Get FASTA)	NCBI Sequence Viewer
	XP_008764557	(Get FASTA)	NCBI Sequence Viewer
	XP_017451375	(Get FASTA)	NCBI Sequence Viewer
	XP_017451379	(Get FASTA)	NCBI Sequence Viewer
	XP_017451380	(Get FASTA)	NCBI Sequence Viewer
	XP_017451381	(Get FASTA)	NCBI Sequence Viewer
	XP_038938002	(Get FASTA)	NCBI Sequence Viewer
	XP_038938003	(Get FASTA)	NCBI Sequence Viewer
	XP_038938005	(Get FASTA)	NCBI Sequence Viewer
	XP_038938006	(Get FASTA)	NCBI Sequence Viewer
	XP_038938007	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52200	(Get FASTA)	NCBI Sequence Viewer
	AAH78831	(Get FASTA)	NCBI Sequence Viewer
	EDL95840	(Get FASTA)	NCBI Sequence Viewer
	EDL95841	(Get FASTA)	NCBI Sequence Viewer
	EDL95842	(Get FASTA)	NCBI Sequence Viewer
	Q62761	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_071624 ⟸ NM_022288

- UniProtKB:

Q62761 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQPRSLTAEWFVLAPLS
HPPAPT

hide sequence

RefSeq Acc Id:	XP_008764554 ⟸ XM_008766332
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZUI8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEAKCCCFFK RKRKKTAQRHK hide sequence

RefSeq Acc Id:

XP_008764557 ⟸ XM_008766335

- Peptide Label:

isoform X5

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQVVSSTNGELNVDDPT
GAHSSAPITAHAEVEVVEEAKCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:	XP_008764556 ⟸ XM_008766334
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K7C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS RQTNTSYLTSHLAADRHGGSVQPRSLTAEWFVLAPLSHPPAPT hide sequence

RefSeq Acc Id:	XP_017451375 ⟸ XM_017595886
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN LWCCCFFKRKRKKTAQRHK hide sequence

RefSeq Acc Id:	XP_017451380 ⟸ XM_017595891
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AAK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQVVSSTNGELNVDDPT GAHSSAPITAHAEVEVVEEANCLKMLNLWCCCFFKRKRKKTAQRHK hide sequence

RefSeq Acc Id:	XP_017451381 ⟸ XM_017595892
- Peptide Label:	isoform X6
- UniProtKB:	Q62761 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQPRSLTAEWFVLAPLS HPPAPT hide sequence

RefSeq Acc Id:	XP_017451379 ⟸ XM_017595890
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN LWCCCFFKRKRKKTAQRHK hide sequence

RefSeq Acc Id:

ENSRNOP00000074148 ⟸ ENSRNOT00000090096

RefSeq Acc Id:

ENSRNOP00000048274 ⟸ ENSRNOT00000042369

RefSeq Acc Id:	XP_038938003 ⟸ XM_039082075
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938002 ⟸ XM_039082074
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938005 ⟸ XM_039082077
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938006 ⟸ XM_039082078
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038938007 ⟸ XM_039082079
- Peptide Label:	isoform X7

RefSeq Acc Id:

ENSRNOP00000082115 ⟸ ENSRNOT00000116171

RefSeq Acc Id:

ENSRNOP00000082082 ⟸ ENSRNOT00000096791

RefSeq Acc Id:

ENSRNOP00000090680 ⟸ ENSRNOT00000096879

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62761-F1-model_v2	AlphaFold	Q62761	1-390	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621404	AgrOrtholog
BioCyc Gene	G2FUF-30038	BioCyc
Ensembl Genes	ENSRNOG00000016620	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000048274	ENTREZGENE
	ENSRNOP00000048274.2	UniProtKB/Swiss-Prot
	ENSRNOP00000074148	ENTREZGENE
	ENSRNOP00000074148.1	UniProtKB/TrEMBL
	ENSRNOP00000082082	ENTREZGENE
	ENSRNOP00000082082.1	UniProtKB/TrEMBL
	ENSRNOP00000082115	ENTREZGENE
	ENSRNOP00000082115.1	UniProtKB/TrEMBL
	ENSRNOP00000090680	ENTREZGENE
	ENSRNOP00000090680.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042369	ENTREZGENE
	ENSRNOT00000042369.4	UniProtKB/Swiss-Prot
	ENSRNOT00000090096	ENTREZGENE
	ENSRNOT00000090096.2	UniProtKB/TrEMBL
	ENSRNOT00000096791	ENTREZGENE
	ENSRNOT00000096791.1	UniProtKB/TrEMBL
	ENSRNOT00000096879	ENTREZGENE
	ENSRNOT00000096879.1	UniProtKB/TrEMBL
	ENSRNOT00000116171	ENTREZGENE
	ENSRNOT00000116171.1	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134461	IMAGE-MGC_LOAD
InterPro	Casein_kinase-1_gamma_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64086	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93447	IMAGE-MGC_LOAD
NCBI Gene	64086	ENTREZGENE
PANTHER	CASEIN KINASE I ISOFORM GAMMA-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CASEIN KINASE-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CK1gamma_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pkinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Csnk1g1	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K7C4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZUI8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZWD5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AAK7	ENTREZGENE, UniProtKB/TrEMBL
	KC1G1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Csnk1g1	casein kinase 1, gamma 1		casein kinase 1 gamma 1	Name updated	1299863	APPROVED
2002-08-07	Csnk1g1	casein kinase 1 gamma 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	390 amino acids; 45 kDa	727981

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)