 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology AnnotationsMolecular Pathway Annotations |
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Analyze GeneStrainQTL List
 Functional Annotation unavailable |
 Annotation Distribution unavailable |
 Genomic Variants unavailble for Mouse Genomic Variants unavailable |
Functional Annotation |
Annotation Distribution |
Genomic Variants |
 Protein-Protein Interactions unavailable |
 Genome Viewer unavailable |
 Damaging Variants unavailble for Mouse Damaging Variants unavailable |
Protein-Protein Interactions |
Genome Viewer |
Damaging Variants |
 Annotation Comparison unavailable |
 OLGA unavailable |
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Annotation Comparison |
OLGA |
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 Gene Enrichment unavailable |
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Gene Enrichment |
Gene Ontology AnnotationsMolecular Pathway AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway Annotations
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | KEGG |
| 3. | Klaus A and Birchmeier W, Nat Rev Cancer. 2008 May;8(5):387-98. |
| 4. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 5. | Pipeline to import KEGG annotations from KEGG into RGD |
| 6. | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 7. | RGD automated data pipeline |
| 8. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 9. | RGD automated import pipeline for gene-chemical interactions |
| 10. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
| 11. | Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24. |
References - uncuratedRGD Disease Portals| Csnk1g1 has been annotated in the following RGD Disease Portals. |
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Genomics
Comparative Map Data| Csnk1g1 (Rattus norvegicus - Norway rat) |
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| CSNK1G1 (Homo sapiens - human) |
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| Csnk1g1 (Mus musculus - house mouse) |
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| Csnk1g1 (Chinchilla lanigera - long-tailed chinchilla) |
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| CSNK1G1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| CSNK1G1 (Canis lupus familiaris - dog) |
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| Csnk1g1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CSNK1G1 (Sus scrofa - pig) |
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Position Markers| RH132202 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_022288 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_008766332 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008766334 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008766335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595886 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595887 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595888 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595890 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595891 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017595892 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07070476 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07070477 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07070478 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01055252 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01055253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01055254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01055255 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01055256 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC118127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC078831 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ231987 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U22296 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_022288 ⟹ NP_071624 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
CAGGCCATTGGGATTTGTGTGGAGCAGGAGGACAGGTGTGAGGCCAGTACACCTTTGACTCAAThide sequence |
| RefSeq Acc Id: | XM_008766332 ⟹ XP_008764554 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTChide sequence |
| RefSeq Acc Id: | XM_008766334 ⟹ XP_008764556 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTChide sequence |
| RefSeq Acc Id: | XM_008766335 ⟹ XP_008764557 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTChide sequence |
| RefSeq Acc Id: | XM_017595886 ⟹ XP_017451375 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTChide sequence |
| RefSeq Acc Id: | XM_017595887 ⟹ XP_017451376 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AAATTGAATCAATACTCAATGGAGAACTAATGTCAGAGTTGCTACCACATATCCATCACTATCChide sequence |
| RefSeq Acc Id: | XM_017595888 ⟹ XP_017451377 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AAATTGAATCAATACTCAATGGAGAACTAATGTCAGAGTTGCTACCACATATCCATCACTATCChide sequence |
| RefSeq Acc Id: | XM_017595889 ⟹ XP_017451378 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GACAGACAGACACCGCTAGGTTTGGATGTTTTGTTTTGGGTTATTCCCATAGTGCTTATCCATThide sequence |
| RefSeq Acc Id: | XM_017595890 ⟹ XP_017451379 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGCGCGGGCCCGTCCGTGGAGGATTGCGGGGGCGGGACAGAAGGACCAGGGTCCCTGCATGCGAhide sequence |
| RefSeq Acc Id: | XM_017595891 ⟹ XP_017451380 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTChide sequence |
| RefSeq Acc Id: | XM_017595892 ⟹ XP_017451381 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTChide sequence |
Protein Sequences| Protein RefSeqs | NP_071624 | (Get FASTA) | NCBI Sequence Viewer |
| XP_008764554 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008764556 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008764557 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451375 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451376 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451377 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451378 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451379 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451380 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451381 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAC52200 | (Get FASTA) | NCBI Sequence Viewer |
| AAH78831 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL95840 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL95841 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL95842 | (Get FASTA) | NCBI Sequence Viewer | |
| Q62761 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_071624 ⟸ NM_022288 |
| - UniProtKB: | Q62761 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_008764554 ⟸ XM_008766332 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_008764557 ⟸ XM_008766335 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_008764556 ⟸ XM_008766334 |
| - Peptide Label: | isoform X4 |
| - UniProtKB: | A0A0G2K7C4 (UniProtKB/TrEMBL) |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451375 ⟸ XM_017595886 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451380 ⟸ XM_017595891 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451381 ⟸ XM_017595892 |
| - Peptide Label: | isoform X6 |
| - UniProtKB: | Q62761 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451379 ⟸ XM_017595890 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451376 ⟸ XM_017595887 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451377 ⟸ XM_017595888 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
| RefSeq Acc Id: | XP_017451378 ⟸ XM_017595889 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLhide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 5.0)
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Damaging VariantsAssembly: Rnor_5.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 71329563 | 71329564 | T | A | snv | WKY/N (KNAW), WKY/Gcrc (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW) |
Assembly: Rnor_6.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 71620365 | 71620366 | G | T | snv | LEW/Crl (RGD) |
| 8 | 71660073 | 71660074 | T | A | snv | WKY/NCrl (RGD), WKY/N (MCW), WKY/Gcrc (RGD), WKY/NHsd (RGD) |
Assembly: RGSC_v3.4
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 70283451 | 70283452 | T | A | snv | WKY/N (KNAW), LCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), WKY/NCrl (ICL), WKY/NHsd (ICL), WKY/Gcrc (ICL), HCR/2Mco (UMich) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:621404 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000016620 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000048274 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000074148 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000042369 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000090096 | ENTREZGENE, UniProtKB/TrEMBL | |
| IMAGE_CLONE | IMAGE:7134461 | IMAGE-MGC_LOAD |
| InterPro | Casein_kinase-1_gamma_C | UniProtKB/Swiss-Prot |
| Kinase-like_dom_sf | UniProtKB/Swiss-Prot | |
| Prot_kinase_dom | UniProtKB/Swiss-Prot | |
| Protein_kinase_ATP_BS | UniProtKB/Swiss-Prot | |
| Ser/Thr_kinase_AS | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:64086 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:93447 | IMAGE-MGC_LOAD |
| NCBI Gene | 64086 | ENTREZGENE |
| Pfam | CK1gamma_C | UniProtKB/Swiss-Prot |
| Pkinase | UniProtKB/Swiss-Prot | |
| PhenoGen | Csnk1g1 | PhenoGen |
| PROSITE | PROTEIN_KINASE_ATP | UniProtKB/Swiss-Prot |
| PROTEIN_KINASE_DOM | UniProtKB/Swiss-Prot | |
| PROTEIN_KINASE_ST | UniProtKB/Swiss-Prot | |
| SMART | S_TKc | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF56112 | UniProtKB/Swiss-Prot |
| UniGene | Rn.10082 | ENTREZGENE |
| UniProt | A0A0G2K7C4 | ENTREZGENE, UniProtKB/TrEMBL |
| KC1G1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2004-09-10 | Csnk1g1 | casein kinase 1, gamma 1 | casein kinase 1 gamma 1 | Name updated | 1299863 | APPROVED | |
| 2002-08-07 | Csnk1g1 | casein kinase 1 gamma 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_protein | 390 amino acids; 45 kDa | 727981 |
| More on Csnk1g1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 621404 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-04-23 |
| Status: | ACTIVE |
