Csnk1g1 (casein kinase 1, gamma 1) - Rat Genome Database

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Gene: Csnk1g1 (casein kinase 1, gamma 1) Rattus norvegicus
Analyze
Symbol: Csnk1g1
Name: casein kinase 1, gamma 1
RGD ID: 621404
Description: Enables protein serine/threonine kinase activity. Predicted to be involved in endocytosis; positive regulation of canonical Wnt signaling pathway; and signal transduction. Predicted to be located in cytosol. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Orthologous to human CSNK1G1 (casein kinase 1 gamma 1); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; Wnt signaling, canonical pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: casein kinase 1 gamma 1; casein kinase I; casein kinase I isoform gamma-1; CKI-gamma 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8875,334,751 - 75,472,339 (+)NCBIGRCr8
mRatBN7.2866,439,760 - 66,577,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx871,966,714 - 72,075,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0870,239,778 - 70,348,757 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0868,109,042 - 68,218,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0871,533,372 - 71,688,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl871,547,468 - 71,679,666 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0871,261,296 - 71,358,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,193,231 - 70,301,592 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1870,212,284 - 70,320,646 (+)NCBI
Celera865,843,343 - 65,952,588 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nucleus  (IBA)
plasma membrane  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
3. Wnt signalling and its impact on development and cancer. Klaus A and Birchmeier W, Nat Rev Cancer. 2008 May;8(5):387-98.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. Casein kinase I gamma subfamily. Molecular cloning, expression, and characterization of three mammalian isoforms and complementation of defects in the Saccharomyces cerevisiae YCK genes. Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24.
Additional References at PubMed
PMID:15489334   PMID:22871113   PMID:25500533  


Genomics

Comparative Map Data
Csnk1g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8875,334,751 - 75,472,339 (+)NCBIGRCr8
mRatBN7.2866,439,760 - 66,577,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx871,966,714 - 72,075,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0870,239,778 - 70,348,757 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0868,109,042 - 68,218,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0871,533,372 - 71,688,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl871,547,468 - 71,679,666 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0871,261,296 - 71,358,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,193,231 - 70,301,592 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1870,212,284 - 70,320,646 (+)NCBI
Celera865,843,343 - 65,952,588 (+)NCBICelera
Cytogenetic Map8q24NCBI
CSNK1G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381564,165,525 - 64,356,173 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1564,165,525 - 64,356,173 (-)EnsemblGRCh38hg38GRCh38
GRCh371564,457,724 - 64,648,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361562,244,769 - 62,435,495 (-)NCBINCBI36Build 36hg18NCBI36
Build 341562,250,880 - 62,379,879NCBI
Celera1541,336,661 - 41,526,451 (-)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1541,282,388 - 41,472,528 (-)NCBIHuRef
CHM1_11564,577,245 - 64,767,981 (-)NCBICHM1_1
T2T-CHM13v2.01561,972,701 - 62,165,717 (-)NCBIT2T-CHM13v2.0
Csnk1g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,816,235 - 65,952,297 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,816,206 - 65,952,297 (+)EnsemblGRCm39 Ensembl
GRCm38965,908,968 - 66,045,015 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,908,924 - 66,045,015 (+)EnsemblGRCm38mm10GRCm38
MGSCv37965,756,817 - 65,892,821 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36965,707,016 - 65,843,020 (+)NCBIMGSCv36mm8
Celera963,147,988 - 63,280,802 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map935.6NCBI
Csnk1g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545011,102,257 - 11,233,601 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545011,088,601 - 11,239,227 (+)NCBIChiLan1.0ChiLan1.0
CSNK1G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21653,419,807 - 53,627,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11557,595,474 - 57,798,998 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01543,117,845 - 43,302,134 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11561,410,414 - 61,594,180 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1561,410,414 - 61,594,180 (-)Ensemblpanpan1.1panPan2
CSNK1G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13028,661,726 - 28,832,193 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3028,654,200 - 28,788,801 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3028,581,269 - 28,750,826 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03028,838,185 - 29,007,849 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3028,838,575 - 29,007,582 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13028,772,289 - 28,942,374 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03028,834,575 - 29,004,312 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03029,073,782 - 29,243,814 (-)NCBIUU_Cfam_GSD_1.0
Csnk1g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640106,794,274 - 106,947,520 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647124,645,762 - 24,795,414 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647124,642,337 - 24,795,633 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK1G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1107,690,065 - 107,884,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11107,690,049 - 107,884,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,712,242 - 118,792,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK1G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12619,164,948 - 19,374,016 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2619,164,986 - 19,372,834 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048122,020,590 - 122,233,227 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk1g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247818,286,571 - 8,395,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247818,210,988 - 8,400,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Csnk1g1
403 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:102
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000042369
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat

Markers in Region
RH132202  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0871,248,651 - 71,248,854NCBIRnor5.0
Rnor_5.0871,229,722 - 71,229,925NCBIRnor5.0
RGSC_v3.4870,203,320 - 70,203,522UniSTSRGSC3.4
Celera1837,122,060 - 37,122,262UniSTS
Celera865,853,424 - 65,853,626UniSTS
Cytogenetic Map8q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 15 10 2 13 8
Low 3 43 45 41 4 41 8 11 64 33 28 3 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U22296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000042369   ⟹   ENSRNOP00000048274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,453,503 - 66,562,546 (+)Ensembl
Rnor_6.0 Ensembl871,547,468 - 71,678,214 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090096   ⟹   ENSRNOP00000074148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,562,552 (+)Ensembl
Rnor_6.0 Ensembl871,591,360 - 71,679,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096791   ⟹   ENSRNOP00000082082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096879   ⟹   ENSRNOP00000090680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116171   ⟹   ENSRNOP00000082115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,572,204 (+)Ensembl
RefSeq Acc Id: NM_022288   ⟹   NP_071624
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,348,614 - 75,457,639 (+)NCBI
mRatBN7.2866,453,503 - 66,562,546 (+)NCBI
Rnor_6.0871,569,180 - 71,678,214 (+)NCBI
Rnor_5.0871,261,296 - 71,358,274 (+)NCBI
RGSC_v3.4870,193,231 - 70,301,592 (+)RGD
Celera865,843,343 - 65,952,588 (+)RGD
Sequence:
RefSeq Acc Id: XM_008766332   ⟹   XP_008764554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,751 - 75,472,339 (+)NCBI
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766334   ⟹   XP_008764556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,751 - 75,457,634 (+)NCBI
mRatBN7.2866,439,760 - 66,563,887 (+)NCBI
Rnor_6.0871,533,372 - 71,678,209 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766335   ⟹   XP_008764557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,751 - 75,472,339 (+)NCBI
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595886   ⟹   XP_017451375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,751 - 75,472,339 (+)NCBI
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595890   ⟹   XP_017451379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,335,104 - 75,472,339 (+)NCBI
mRatBN7.2866,440,042 - 66,577,247 (+)NCBI
Rnor_6.0871,533,736 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595891   ⟹   XP_017451380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,751 - 75,472,339 (+)NCBI
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595892   ⟹   XP_017451381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,751 - 75,457,634 (+)NCBI
mRatBN7.2866,439,760 - 66,563,887 (+)NCBI
Rnor_6.0871,533,372 - 71,678,209 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082074   ⟹   XP_038938002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,828 - 75,472,339 (+)NCBI
mRatBN7.2866,439,784 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082075   ⟹   XP_038938003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,828 - 75,472,339 (+)NCBI
mRatBN7.2866,439,784 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082077   ⟹   XP_038938005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,828 - 75,472,339 (+)NCBI
mRatBN7.2866,439,784 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082078   ⟹   XP_038938006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,381,140 - 75,472,339 (+)NCBI
mRatBN7.2866,486,040 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082079   ⟹   XP_038938007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,381,143 - 75,472,339 (+)NCBI
mRatBN7.2866,486,045 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_063266070   ⟹   XP_063122140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,830 - 75,472,339 (+)NCBI
RefSeq Acc Id: XM_063266071   ⟹   XP_063122141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,830 - 75,472,339 (+)NCBI
RefSeq Acc Id: XM_063266072   ⟹   XP_063122142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,348,162 - 75,457,634 (+)NCBI
RefSeq Acc Id: XM_063266073   ⟹   XP_063122143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8875,334,831 - 75,472,339 (+)NCBI
Protein Sequences
Protein RefSeqs NP_071624 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764554 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764556 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764557 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451375 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451379 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451380 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938002 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938003 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938005 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938006 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938007 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122140 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122141 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122142 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122143 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52200 (Get FASTA)   NCBI Sequence Viewer  
  AAH78831 (Get FASTA)   NCBI Sequence Viewer  
  EDL95840 (Get FASTA)   NCBI Sequence Viewer  
  EDL95841 (Get FASTA)   NCBI Sequence Viewer  
  EDL95842 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048274
  ENSRNOP00000048274.2
  ENSRNOP00000074148
  ENSRNOP00000074148.1
  ENSRNOP00000082082
  ENSRNOP00000082082.1
  ENSRNOP00000082115
  ENSRNOP00000082115.1
  ENSRNOP00000090680
  ENSRNOP00000090680.1
  ENSRNOP00055035401
  ENSRNOP00060025071
GenBank Protein Q62761 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071624   ⟸   NM_022288
- UniProtKB: Q62761 (UniProtKB/Swiss-Prot),   A6J5G8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764554   ⟸   XM_008766332
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZUI8 (UniProtKB/TrEMBL),   A6J5G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764557   ⟸   XM_008766335
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008764556   ⟸   XM_008766334
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K7C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451375   ⟸   XM_017595886
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451380   ⟸   XM_017595891
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AAK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451381   ⟸   XM_017595892
- Peptide Label: isoform X6
- UniProtKB: Q62761 (UniProtKB/Swiss-Prot),   A6J5G8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451379   ⟸   XM_017595890
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074148   ⟸   ENSRNOT00000090096
RefSeq Acc Id: ENSRNOP00000048274   ⟸   ENSRNOT00000042369
RefSeq Acc Id: XP_038938003   ⟸   XM_039082075
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938002   ⟸   XM_039082074
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938005   ⟸   XM_039082077
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938006   ⟸   XM_039082078
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938007   ⟸   XM_039082079
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000082115   ⟸   ENSRNOT00000116171
RefSeq Acc Id: ENSRNOP00000082082   ⟸   ENSRNOT00000096791
RefSeq Acc Id: ENSRNOP00000090680   ⟸   ENSRNOT00000096879
RefSeq Acc Id: XP_063122141   ⟸   XM_063266071
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZUI8 (UniProtKB/TrEMBL),   A6J5G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122140   ⟸   XM_063266070
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZUI8 (UniProtKB/TrEMBL),   A6J5G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122143   ⟸   XM_063266073
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063122142   ⟸   XM_063266072
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K7C4 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62761-F1-model_v2 AlphaFold Q62761 1-390 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621404 AgrOrtholog
BioCyc Gene G2FUF-30038 BioCyc
Ensembl Genes ENSRNOG00000016620 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055025170 UniProtKB/Swiss-Prot
  ENSRNOG00060018022 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000042369 ENTREZGENE
  ENSRNOT00000042369.4 UniProtKB/Swiss-Prot
  ENSRNOT00000090096.2 UniProtKB/TrEMBL
  ENSRNOT00000096791.1 UniProtKB/TrEMBL
  ENSRNOT00000096879.1 UniProtKB/TrEMBL
  ENSRNOT00000116171.1 UniProtKB/TrEMBL
  ENSRNOT00055043403 UniProtKB/Swiss-Prot
  ENSRNOT00060030964 UniProtKB/Swiss-Prot
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134461 IMAGE-MGC_LOAD
InterPro Casein_kinase-1_gamma_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64086 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93447 IMAGE-MGC_LOAD
NCBI Gene 64086 ENTREZGENE
PANTHER CASEIN KINASE I ISOFORM GAMMA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASEIN KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CK1gamma_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csnk1g1 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016620 RatGTEx
  ENSRNOG00055025170 RatGTEx
  ENSRNOG00060018022 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K7C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAK7 ENTREZGENE, UniProtKB/TrEMBL
  A6J5G7 ENTREZGENE, UniProtKB/TrEMBL
  A6J5G8 ENTREZGENE, UniProtKB/TrEMBL
  A6J5G9_RAT UniProtKB/TrEMBL
  KC1G1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Csnk1g1  casein kinase 1, gamma 1    casein kinase 1 gamma 1  Name updated 1299863 APPROVED
2002-08-07 Csnk1g1  casein kinase 1 gamma 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 390 amino acids; 45 kDa 727981