Csnk1g1 (casein kinase 1, gamma 1)

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Gene: Csnk1g1 (casein kinase 1, gamma 1) Rattus norvegicus

Analyze

Symbol:

Csnk1g1

Name:

casein kinase 1, gamma 1

RGD ID:

621404

Description:

Exhibits protein serine/threonine kinase activity. Involved in protein autophosphorylation. Predicted to localize to cytosol; nucleus; and plasma membrane. Orthologous to human CSNK1G1 (casein kinase 1 gamma 1); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; Wnt signaling, canonical pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

casein kinase 1 gamma 1; casein kinase I; casein kinase I isoform gamma-1; CKI-gamma 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSNK1G1 (casein kinase 1 gamma 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB
Mus musculus (house mouse):	Csnk1g1 (casein kinase 1, gamma 1)	HGNC	NCBI, HomoloGene, Inparanoid, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Csnk1g1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Csnk1g1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CSNK1G1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Csnk1g1 (casein kinase 1 gamma 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CSNK1G1 (casein kinase 1 gamma 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Csnk1g1 (casein kinase 1, gamma 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	csnk1g1 (casein kinase 1, gamma 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	YCK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder)
Saccharomyces cerevisiae (baker's yeast):	YCK3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder)
Caenorhabditis elegans (roundworm):	csnk-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	gish	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	YCK2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0 Ensembl	8	71,547,468 - 71,679,666 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	71,261,296 - 71,358,274 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,193,231 - 70,301,592 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	70,212,284 - 70,320,646 (+)	NCBI
Celera	8	65,843,343 - 65,952,588 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

nemaline myopathy 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

cisplatin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dichlorine (EXP)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

flavonoids (EXP)

folic acid (ISO)

formaldehyde (ISO)

genistein (EXP)

leflunomide (ISO)

methyl methanesulfonate (ISO)

ozone (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

rifampicin (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

torcetrapib (ISO)

tungsten (ISO)

tunicamycin (ISO)

urethane (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IBA)

peptidyl-serine phosphorylation (IBA,ISO)

positive regulation of canonical Wnt signaling pathway (IBA)

protein autophosphorylation (IDA)

protein phosphorylation (IDA,IEA)

Wnt signaling pathway (IBA,IEA)

Cellular Component

cytoplasm (IBA)

cytosol (ISO)

nucleus (IBA)

plasma membrane (IBA)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IBA,IDA,ISO)

protein threonine kinase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (IEA,ISO)

p53 signaling pathway (ISO)

Wnt signaling, canonical pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG
3.	Klaus A and Birchmeier W, Nat Rev Cancer. 2008 May;8(5):387-98.
4.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Pipeline to import KEGG annotations from KEGG into RGD
6.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	RGD automated data pipeline
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions
10.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11.	Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24.

Additional References at PubMed

PMID:15489334	PMID:22871113	PMID:25500533

Genomics

Comparative Map Data

Csnk1g1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0 Ensembl	8	71,547,468 - 71,679,666 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	71,261,296 - 71,358,274 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,193,231 - 70,301,592 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	70,212,284 - 70,320,646 (+)	NCBI
Celera	8	65,843,343 - 65,952,588 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

CSNK1G1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	64,165,525 - 64,356,173 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	64,165,525 - 64,356,173 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	64,457,724 - 64,648,372 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	15	64,457,716 - 64,665,968 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	62,244,769 - 62,435,495 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	62,250,880 - 62,379,879	NCBI
Celera	15	41,336,661 - 41,526,451 (-)	NCBI
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	41,282,388 - 41,472,528 (-)	NCBI		HuRef
CHM1_1	15	64,577,245 - 64,767,981 (-)	NCBI		CHM1_1

Csnk1g1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	65,816,235 - 65,952,297 (+)	NCBI	GRCm39		mm39
GRCm38	9	65,908,968 - 66,045,015 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	65,908,924 - 66,045,015 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	65,756,817 - 65,892,821 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	65,707,016 - 65,843,020 (+)	NCBI			mm8
Celera	9	63,147,988 - 63,280,802 (+)	NCBI		Celera
Cytogenetic Map	9	C	NCBI

Csnk1g1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,102,257 - 11,233,601 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,088,601 - 11,239,227 (+)	NCBI	ChiLan1.0	ChiLan1.0

CSNK1G1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	61,410,414 - 61,594,180 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	61,410,414 - 61,594,180 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	43,117,845 - 43,302,134 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

CSNK1G1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	30	28,654,200 - 28,788,801 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	30	28,661,726 - 28,832,193 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Csnk1g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936471	24,642,337 - 24,795,633 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSNK1G1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,690,065 - 107,884,045 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	107,690,049 - 107,884,054 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	118,712,242 - 118,792,181 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSNK1G1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,164,948 - 19,374,016 (+)	NCBI
ChlSab1.1 Ensembl	26	19,164,986 - 19,372,834 (+)	Ensembl

Csnk1g1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624781	8,210,988 - 8,400,065 (+)	NCBI

Position Markers

RH132202

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	8	71,248,651 - 71,248,854	NCBI	Rnor5.0
Rnor_5.0	8	71,229,722 - 71,229,925	NCBI	Rnor5.0
RGSC_v3.4	8	70,203,320 - 70,203,522	UniSTS	RGSC3.4
Celera	18	37,122,060 - 37,122,262	UniSTS
Celera	8	65,853,424 - 65,853,626	UniSTS
Cytogenetic Map	8	q24	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	9531047	119211942	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10938911	120496129	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	21464919	91140553	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	21813070	100873963	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	27841496	72841496	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	29867983	106526740	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	29867983	106526740	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	29867983	106526740	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	30144800	75144800	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	30144800	75144800	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	30918112	75918112	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	30918112	107206309	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	32201981	75971421	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	32888352	101374135	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	33558660	89058369	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	33558660	89058369	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	33558660	89058369	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	33558660	89058369	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	33558660	109028082	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	33558660	109028082	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	33558660	109028082	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	33558764	113580387	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	35041414	80041414	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	35925594	80925594	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	39230130	106506973	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39927901	84927901	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	39958022	84958022	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	44219197	89542960	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	44219197	100873963	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	44458129	118087517	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	45712344	80003418	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	45712344	90712344	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	45712475	75971259	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46588437	96998640	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	47200750	106394378	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	47200750	106394378	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	47200750	106394378	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	47200750	106394378	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	47200750	106394378	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	47200750	106394378	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	50529480	128036471	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	50529480	128036471	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	50529480	128036471	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	50529480	128036471	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	50529563	106506973	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	54065044	89058369	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	54065044	89058369	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	54065044	89058369	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	55435004	115812386	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	55659105	100659105	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	58230766	106394378	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	58425510	91990535	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	58425510	91990535	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	58425510	106526740	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	59234112	108068306	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	61394378	106394378	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	61394378	106394378	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	65717449	128033050	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	134
Count of miRNA genes:	102
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000042369
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			12		15				10	2	13	8
Low	3	43	45	41	4	41	8	11	64	33	28	3	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U22296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000042369 ⟹ ENSRNOP00000048274

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	71,547,468 - 71,678,214 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090096 ⟹ ENSRNOP00000074148

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	71,591,360 - 71,679,666 (+)	Ensembl

RefSeq Acc Id:

NM_022288 ⟹ NP_071624

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,453,503 - 66,562,546 (+)	NCBI
Rnor_6.0	8	71,569,180 - 71,678,214 (+)	NCBI
Rnor_5.0	8	71,261,296 - 71,358,274 (+)	NCBI
RGSC_v3.4	8	70,193,231 - 70,301,592 (+)	RGD
Celera	8	65,843,343 - 65,952,588 (+)	RGD

Sequence:

show sequence

CAGGCCATTGGGATTTGTGTGGAGCAGGAGGACAGGTGTGAGGCCAGTACACCTTTGACTCAAT
GGGGCTTAATTGGTTACAAAATGTCCTCCTATGCATGAGATCTACAGACTATATGTTCTTCAAG
AACTGATCAGTGGTTTCACCTTCTGGAAGAACATTACAAGCATAAATATGGTGCCAAAACTCCT
CATTCTCTGACTGTGGTGTACTGGACCTACTTTTGTGTTGAAGAGAACTATACACGCTGAGGTC
ACTCATTGTTCAGAGACTGTCGTGTAGGAACATGGACCATTCTAATAGAGAAAAGGATGATAGA
CAACGGACAACTAAAACCATGGCACAAAGGAATACACACTGTTCCCGACCATCTGGCACTTCAA
CATCCTCTGGGGTTCTCATGGTGGGACCCAACTTCAGGGTTGGCAAGAAGATAGGGTGTGGGAA
CTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACACCAATGAATATGTAGCCATTAAACTGGAA
CCAATAAAATCACGTGCTCCACAACTTCATTTAGAGTACAGGTTTTATAAACAGCTCGGCAGTG
CAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGACCATGTGGGAAGTACAATGCCATGGTGCT
GGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTGACCTCTGTGACCGAACGTTTACTTTGAAG
ACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCGAATGGAGTATGTACACTCAAAGAATCTCA
TTTACCGAGATGTCAAACCAGAGAACTTCTTAATTGGCCGACAAGGCAATAAGAAAGAGCATGT
AATACACATTATAGATTTTGGACTGGCCAAGGAATACATTGATCCTGAAACCAAAAAACACATA
CCTTACAGAGAGCACAAAAGCTTAACTGGAACTGCGCGATACATGTCTATCAACACACATCTAG
GCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCCCTGGGCCATATGTTCATGTACTTCCTTCG
AGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATACATTAAAAGAGAGATATCAGAAAATTGGT
GATACCAAAAGGAGTACTCCCATCGAAGCTCTCTGTGAGAACTTTCCAGAGGAGATGATGACCT
ACCTTCGATATGTCAGGAGATTAGACTTCTTTGAAAAACCTGATTATGAGTATTTACGGAACCT
CTTCACAGATCTGTTTGAACGGAAAGGCTATACTTTTGACTATGCCTATGATTGGGTTGGAAGG
CCTATTCCTACTCCAGTAGGATCAGTTCATGTAGATTCTGGTGCATCTGCAATAACTCGAGAAA
GCCACACACACAGGGATCGACCATCACAACAACAGCCTCTTAGAAATCAGCCAAGATCTTTAAC
AGCAGAGTGGTTTGTGCTGGCTCCCCTTTCCCACCCTCCAGCACCCACATAAGCAGGAGTCATG
TGCTGGCAGTGAAAGCAGGTGGCAGGAGCGGCTGCACAACAAGACAAGCCTGATCGGGTCCACA
CTAACCAGATGACAGGAGTGGGAGACAGAGCCTTCATTGACAGTTCGGGACCATCAGTGAGCAG
TGGGATGACAGTGAACCTGAAATAAAGGCCATTGAAATAAGACTTGTA

hide sequence

RefSeq Acc Id:

XM_008766332 ⟹ XP_008764554

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGC
AGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGGT
GGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTGCACCG
ATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAAGTGCTGCTGTTTCTTTAAGAGGA
AAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCCTCCCAGGAGTCCTCAAGTCCTGGG
GACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCTCATTGGAAGGGACTCCTCTGTGGG
GGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGCCCCCAGAAGGAGCCAGTGCAGGCA
GCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGAGCTCTGAGCGGGTCCAGAGCTGCT
GCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCTCTTCCCATTGTTTACAGTGAAGGT
GTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTTCTCTTCCTTTACTCCTGGCTCTTG
CACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCTAAAGGCTCTGTCAAGAAGCTGGTG
GTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCTGGAGAACGTCTCCACGTCCCAGAT
GTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAACCCCTCAGCCCAGCTGGCCACAGG
GTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCTGTGAAGTTACACTCTGG
GACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTGTATTGGCATTCTTAGCTTTTTTGA
CAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCTGTGGTTCTGAGCAAAGGAGAAGAA
ACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTTTTATTTTGTAAACAACATGGCAGA
TGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTCTTTTTTCAAGGGGGATGGGCCAGC
CAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTTGATGGAAAGAGTCTGATTTGCAGC
ACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGTAAATACTCAGGTTGGCAAGGAAAC
ATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAAGTCCCCACCAGAGCCCCTTGACCT
AATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTGGGATGAGCACCGAGCCAGACTGTG
ACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAACAACAACAACAAAACAAAATTTCT
GTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATGTGACTTTCTGTTGACTCGGGGAAC
AAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAGTGGACAAAAGAAGGCACCAAATTT
GCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCTAGGGCCATGAAAAGAAAAATAAAT
ATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_008766334 ⟹ XP_008764556

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,563,887 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,678,209 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGC
AGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGCC
AAGATCTTTAACAGCAGAGTGGTTTGTGCTGGCTCCCCTTTCCCACCCTCCAGCACCCACATAA
GCAGGAGTCATGTGCTGGCAGTGAAAGCAGGTGGCAGGAGCGGCTGCACAACAAGACAAGCCTG
ATCGGGTCCACACTAACCAGATGACAGGAGTGGGAGACAGAGCCTTCATTGACAGTTCGGGGAC
CATCAGTGAGCAGTGGGATGACAGTGAACCTGAAATAAAGGCCATTGAAATAAGA

hide sequence

RefSeq Acc Id:

XM_008766335 ⟹ XP_008764557

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAG
CTCACTCCAGTGCACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAAGTGCTG
CTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCCTCCCAGG
AGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCTCATTGGA
AGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGCCCCCAGA
AGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGAGCTCTGA
GCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCTCTTCCCA
TTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTTCTCTTCC
TTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCTAAAGGCT
CTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCTGGAGAAC
GTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAACCCCTCA
GCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCT
GTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTGTATTGGC
ATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCTGTGGTTC
TGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTTTTATTTT
GTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTCTTTTTTC
AAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTTGATGGAA
AGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGTAAATACT
CAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAAGTCCCCA
CCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTGGGATGAG
CACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAACAACAAC
AACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATGTGACTTT
CTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAGTGGACAA
AAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCTAGGGCCA
TGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595886 ⟹ XP_017451375

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGC
AGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGGT
GGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTGCACCG
ATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCTGAAAATGCTCAACCTGT
GGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCC
TCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCT
CATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGC
CCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGA
GCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCT
CTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTT
CTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCT
AAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCT
GGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAA
CCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCT
CCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTG
TATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCT
GTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTT
TTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTC
TTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTT
GATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGT
AAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAA
GTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTG
GGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAA
CAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATG
TGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAG
TGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCT
AGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595887 ⟹ XP_017451376

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	71,566,413 - 71,688,483 (+)	NCBI

Sequence:

show sequence

AAATTGAATCAATACTCAATGGAGAACTAATGTCAGAGTTGCTACCACATATCCATCACTATCC
TTGTATTATAGGGATACAAAAATGAAGATATGGTGTGTACTTTTATTAATCAAGTTGAAGAAAC
AAGACTTCAAAGGTAGAGTAACAGAGGACAGGTGTGAGGCCAGTACACCTTTGACTCAATGGGG
CTTAATTGGTTACAAAATGTCCTCCTATGCATGAGATCTACAGACTATATGTTCTTCAAGAACT
GATCAGTGGTTTTCACCTTCTGGAAGAACATTAGAAGCATAAATATGGTGCCAAAACTCCTCAT
TCTCTGACTGTGGTGATCTGGACCTACTTTTGTGTTGAAGAGAAGTATACACGCTGAGGTCACT
CATTGTTCAGAGACTGTCGTGTAGGAACATGGACCATTCTAATAGAGAAAAGGATGATAGACAA
CGGACAACTAAAACCATGGCACAAAGGAATACACACTGTTCCCGACCATCTGGCACTTCAACAT
CCTCTGGGGTTCTCATGGTGGGACCCAACTTCAGGGTTGGCAAGAAGATAGGGTGTGGGAACTT
CGGAGAGCTCAGATTAGGTAAAAATCTCTACACCAATGAATATGTAGCCATTAAACTGGAACCA
ATAAAATCACGTGCTCCACAACTTCATTTAGAGTACAGGTTTTATAAACAGCTCGGCAGTGCAG
GTGAAGGTCTCCCACAGGTTTATTACTTTGGACCATGTGGGAAGTACAATGCCATGGTGCTGGA
ACTCCTCGGCCCTAGCTTGGAAGACTTGTTTGACCTCTGTGACCGAACGTTTACTTTGAAGACG
GTGTTAATGATAGCCATCCAGTTGCTTTCTCGAATGGAGTATGTACACTCAAAGAATCTCATTT
ACCGAGATGTCAAACCAGAGAACTTCTTGATTGGCCGACAAGGCAATAAGAAAGAGCATGTAAT
ACACATTATAGATTTTGGACTGGCCAAGGAATACATTGATCCTGAAACCAAAAAACACATACCT
TACAGAGAGCACAAAAGCTTAACTGGAACTGCGCGATACATGTCTATCAACACACATCTAGGCA
AAGAGCAAAGCCGGCGGGATGATTTGGAAGCCCTGGGCCATATGTTCATGTACTTCCTTCGAGG
CAGCCTACCCTGGCAAGGACTCAAGGCTGATACATTAAAAGAGAGATATCAGAAAATTGGTGAT
ACCAAAAGGAGTACTCCCATCGAAGCTCTCTGTGAGAACTTTCCAGAGGAGATGATGACCTACC
TTCGATATGTCAGGAGATTAGACTTCTTTGAAAAACCTGATTATGAGTATTTACGGAACCTCTT
CACAGATCTGTTTGAACGGAAAGGCTATACTTTTGACTATGCCTATGATTGGGTTGGAAGGCCT
ATTCCTACTCCAGTAGGATCAGTTCATGTAGATTCTGGTGCATCTGCAATAACTCGAGAAAGCC
ACACACACAGGGATCGACCATCACAACAACAGCCTCTTAGAAATCAGACCACATCTTCAGAGCG
CCGAGGAGAGTGGGAAATCCAGCCCAGCCGGCAGACCAATACCTCATACCTGACGTCTCACTTG
GCCGCAGACCGCCATGGGGGTTCAGTACAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTG
ATGACCCCACTGGAGCTCACTCCAGTGCACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGA
GGAAGCTAACTGCCTGAAAATGCTCAACCTGTGGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAG
AAGACTGCTCAGCGACACAAGTGACCAGTGCCTCCCAGGAGTCCTCAAGTCCTGGGGACTCTGG
CTCCAATTGCACCTGCAGCTCCTGCCATTTCTCATTGGAAGGGACTCCTCTGTGGGGGAGGGTA
GAGATCCAAACCAAAAAGAAGAAAACAGATGCCCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGC
CAAGTGGGCCAGTGGCAATCCCCTCTGTCTGAGCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCC
ACTGCTTGCCCTTGGGCTATCTGGTTGACTCTCTTCCCATTGTTTACAGTGAAGGTGTCATTCA
CAAAAACTCAAGGACTACTGTTCTCTTCCCTTCTCTTCCTTTACTCCTGGCTCTTGCACCATCC
TCAACCCTCTCCAGCATAGAAACTACTAAGCTAAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCC
AAGAAGATAGGGGAAGACGACAGCCCTGGGCTGGAGAACGTCTCCACGTCCCAGATGTGTCTGG
TAGTATGGTTTCCTCCTTCTGTGCCTGGGTAACCCCTCAGCCCAGCTGGCCACAGGGTTCTGGT
CCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCTGTGAAGTTACACTCTGGGACACAAG
CTGTGAGCAATCTGCAGTCTACTGTCCCTGTGTATTGGCATTCTTAGCTTTTTTGACAAGCAGA
TCCTTTGCTCCAGGCTGTAGCAAAACAAGCCTGTGGTTCTGAGCAAAGGAGAAGAAACTGACTT
TATTGCACTTTTAGTTTGGGGGTTTGTTTTTTTTATTTTGTAAACAACATGGCAGATGCATATT
GTGTCTGGTTATATTGGGGGGTTACTTTTTTCTTTTTTCAAGGGGGATGGGCCAGCCAAGCCAT
TCAGAGAAAATGTGGGTCCAGAGGACATTCTTGATGGAAAGAGTCTGATTTGCAGCACTTGGAA
GAGAAGAAGCCAAACTCTGCGTCATCCTGAGTAAATACTCAGGTTGGCAAGGAAACATACTTGA
ATTTTCATTCATCTTCTCTGCTGCAGAAAAAAGTCCCCACCAGAGCCCCTTGACCTAATCAGCC
CAGAGCTGGAAAGCCCAGCTCCTGAGCACTTGGGATGAGCACCGAGCCAGACTGTGACGACCAG
AAGGCACCTCACCTCAGAGAGGAGATACTTAACAACAACAACAAAACAAAATTTCTGTTTCCTC
CACTGCCAGGGACTTCCTACTAGATAGCCATGTGACTTTCTGTTGACTCGGGGAACAAAATTAG
TGACTAAACAGCCACCACCATATTGCCAGTAGTGGACAAAAGAAGGCACCAAATTTGCCTTCCA
ACTGCCAGAGGAAGCTCAGGATGCAGCATCCTAGGGCCATGAAAAGAAAAATAAATATTTTCTG
TCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595888 ⟹ XP_017451377

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	71,566,413 - 71,688,483 (+)	NCBI

Sequence:

show sequence

AAATTGAATCAATACTCAATGGAGAACTAATGTCAGAGTTGCTACCACATATCCATCACTATCC
TTGTATTATAGGGATACAAAAATGAAGATATGGTGTGTACTTTTATTAATCAAGTTGAAGAAAC
AAGACTTCAAAGGAGGACAGGTGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTT
ACAAAATGTCCTCCTATGCATGAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTT
TTCACCTTCTGGAAGAACATTAGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGT
GGTGATCTGGACCTACTTTTGTGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGA
GACTGTCGTGTAGGAACATGGACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAA
AACCATGGCACAAAGGAATACACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTT
CTCATGGTGGGACCCAACTTCAGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCA
GATTAGGTAAAAATCTCTACACCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACG
TGCTCCACAACTTCATTTAGAGTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTC
CCACAGGTTTATTACTTTGGACCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCC
CTAGCTTGGAAGACTTGTTTGACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGAT
AGCCATCCAGTTGCTTTCTCGAATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTC
AAACCAGAGAACTTCTTGATTGGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAG
ATTTTGGACTGGCCAAGGAATACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCA
CAAAAGCTTAACTGGAACTGCGCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGC
CGGCGGGATGATTTGGAAGCCCTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCT
GGCAAGGACTCAAGGCTGATACATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAG
TACTCCCATCGAAGCTCTCTGTGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTC
AGGAGATTAGACTTCTTTGAAAAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGT
TTGAACGGAAAGGCTATACTTTTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCC
AGTAGGATCAGTTCATGTAGATTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGG
GATCGACCATCACAACAACAGCCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGT
GGGAAATCCAGCCCAGCCGGCAGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCG
CCATGGGGGTTCAGTACAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACT
GGAGCTCACTCCAGTGCACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACT
GCCTGAAAATGCTCAACCTGTGGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCA
GCGACACAAGTGACCAGTGCCTCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCA
CCTGCAGCTCCTGCCATTTCTCATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAAC
CAAAAAGAAGAAAACAGATGCCCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCA
GTGGCAATCCCCTCTGTCTGAGCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCC
TTGGGCTATCTGGTTGACTCTCTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAA
GGACTACTGTTCTCTTCCCTTCTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTC
CAGCATAGAAACTACTAAGCTAAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGG
GGAAGACGACAGCCCTGGGCTGGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTT
CCTCCTTCTGTGCCTGGGTAACCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGG
TCCCTCCCTCCCTCCCTCCCTCCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAAT
CTGCAGTCTACTGTCCCTGTGTATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCC
AGGCTGTAGCAAAACAAGCCTGTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTT
TAGTTTGGGGGTTTGTTTTTTTTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTA
TATTGGGGGGTTACTTTTTTCTTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAAT
GTGGGTCCAGAGGACATTCTTGATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCC
AAACTCTGCGTCATCCTGAGTAAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCA
TCTTCTCTGCTGCAGAAAAAAGTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAA
AGCCCAGCTCCTGAGCACTTGGGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCA
CCTCAGAGAGGAGATACTTAACAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGG
ACTTCCTACTAGATAGCCATGTGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAG
CCACCACCATATTGCCAGTAGTGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGG
AAGCTCAGGATGCAGCATCCTAGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595889 ⟹ XP_017451378

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	71,568,779 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GACAGACAGACACCGCTAGGTTTGGATGTTTTGTTTTGGGTTATTCCCATAGTGCTTATCCATT
AACAGCTCTGCCTAGCTTTCCTGGCTAAAGTAGGAGCTGAGTGTCTACTCTAGACATGTGAGAT
TCATTAAATGAAACAAGCATTTAATAAAGAATACCCACTTTTTACTGCATTTTATAGAGTTAAC
AGTTTCCCTTGGTCCTGAAGTTTTAGCCTTCTCACAGGCAAGGCTGTGCTGTGCCTTGAAATTT
AGCTTTTTGTTAGGACAGTACTGACAGCATAAATGTCTTTATGTACTCAGCTGTGATTAACCTA
AGCTCAGTCCTTGAAACACTGCTTTGCAGTTACCAAGCGTACTTTCAATCCAAGTTGCCACACT
TACCAGTACTGATTTCAAGGCCATTGGGATTTGTGTGGAGCAGGAGGACAGGTGTGAGGCCAGT
ACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCATGAGATCTACAGA
CTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATTAGAAGCATAAAT
ATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTGTGTTGAAGAGAA
GTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGGACCATTCTAATA
GAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATACACACTGTTCCCG
ACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTCAGGGTTGGCAAG
AAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACACCAATGAATATG
TAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGAGTACAGGTTTTA
TAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGACCATGTGGGAAG
TACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTGACCTCTGTGACC
GAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCGAATGGAGTATGT
ACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATTGGCCGACAAGGC
AATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAATACATTGATCCTG
AAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGCGCGATACATGTC
TATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCCCTGGGCCATATG
TTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATACATTAAAAGAGA
GATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTGTGAGAACTTTCC
AGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAAAAACCTGATTAT
GAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTTTTGACTATGCCT
ATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGATTCTGGTGCATC
TGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAGCCTCTTAGAAAT
CAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGCAGACCAATACCT
CATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTACAGGTGGTTAGCTCAAC
CAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTGCACCGATCACAGCTCAT
GCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCTGAAAATGCTCAACCTGTGGTGCTGCTGTT
TCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCAGTGCCTCCCAGGAGTCC
TCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCATTTCTCATTGGAAGGGA
CTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACAGATGCCCCCAGAAGGAG
CCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTGTCTGAGCTCTGAGCGGG
TCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTGACTCTCTTCCCATTGTT
TACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTTCCCTTCTCTTCCTTTAC
TCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACTAAGCTAAAGGCTCTGTC
AAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCTGGGCTGGAGAACGTCTC
CACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTGGGTAACCCCTCAGCCCA
GCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCTGTGAA
GTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCCCTGTGTATTGGCATTCT
TAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACAAGCCTGTGGTTCTGAGC
AAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGTTTTTTTTATTTTGTAAA
CAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTTTTTTCTTTTTTCAAGGG
GGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACATTCTTGATGGAAAGAGT
CTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCCTGAGTAAATACTCAGGT
TGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGAAAAAAGTCCCCACCAGA
GCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGCACTTGGGATGAGCACCG
AGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATACTTAACAACAACAACAA
AACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAGCCATGTGACTTTCTGTT
GACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCCAGTAGTGGACAAAAGAA
GGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGCATCCTAGGGCCATGAAA
AGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595890 ⟹ XP_017451379

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,440,042 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,736 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GGCGCGGGCCCGTCCGTGGAGGATTGCGGGGGCGGGACAGAAGGACCAGGGTCCCTGCATGCGA
AGAGTTGCGGGTTAGACCCCGTCGTAGGAGGCGCCCTTTCTGAAGCCAATGCAGACCGGGAGTT
TCCCACCTGGAGTGCCCGCTCTGAAAAGAAGGGGGAGCATCCTCCAGGACCGAAATCAGGGAGG
ACAGGTGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTA
TGCATGAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGA
ACATTAGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTAC
TTTTGTGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAA
CATGGACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGG
AATACACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCA
ACTTCAGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCT
CTACACCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCAT
TTAGAGTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACT
TTGGACCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTT
GTTTGACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTT
TCTCGAATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCT
TGATTGGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAA
GGAATACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGA
ACTGCGCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGG
AAGCCCTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGC
TGATACATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCT
CTCTGTGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCT
TTGAAAAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTA
TACTTTTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCAT
GTAGATTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAAC
AACAGCCTCTTAGAAATCAGACCACATCTTCAGAGCGCCGAGGAGAGTGGGAAATCCAGCCCAG
CCGGCAGACCAATACCTCATACCTGACGTCTCACTTGGCCGCAGACCGCCATGGGGGTTCAGTA
CAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAGCTCACTCCAGTG
CACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCTGAAAATGCTCAA
CCTGTGGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGACACAAGTGACCA
GTGCCTCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTGCAGCTCCTGCCA
TTTCTCATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAAAAGAAGAAAACA
GATGCCCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGGCAATCCCCTCTG
TCTGAGCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGGGCTATCTGGTTG
ACTCTCTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGACTACTGTTCTCTT
CCCTTCTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGCATAGAAACTACT
AAGCTAAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAAGACGACAGCCCT
GGGCTGGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTCCTTCTGTGCCTG
GGTAACCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCCTCCCTCCCTCCC
TCCCTCCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGCAGTCTACTGTCC
CTGTGTATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGCTGTAGCAAAACA
AGCCTGTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGTTTGGGGGTTTGT
TTTTTTTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATTGGGGGGTTACTT
TTTTCTTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGGGTCCAGAGGACA
TTCTTGATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAACTCTGCGTCATCC
TGAGTAAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTTCTCTGCTGCAGA
AAAAAGTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCCCAGCTCCTGAGC
ACTTGGGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTCAGAGAGGAGATA
CTTAACAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTTCCTACTAGATAG
CCATGTGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCACCACCATATTGCC
AGTAGTGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGCTCAGGATGCAGC
ATCCTAGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595891 ⟹ XP_017451380

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,577,247 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,688,483 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTTGATGACCCCACTGGAG
CTCACTCCAGTGCACCGATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAACTGCCT
GAAAATGCTCAACCTGTGGTGCTGCTGTTTCTTTAAGAGGAAAAGGAAGAAGACTGCTCAGCGA
CACAAGTGACCAGTGCCTCCCAGGAGTCCTCAAGTCCTGGGGACTCTGGCTCCAATTGCACCTG
CAGCTCCTGCCATTTCTCATTGGAAGGGACTCCTCTGTGGGGGAGGGTAGAGATCCAAACCAAA
AAGAAGAAAACAGATGCCCCCAGAAGGAGCCAGTGCAGGCAGCCAGGGCCAAGTGGGCCAGTGG
CAATCCCCTCTGTCTGAGCTCTGAGCGGGTCCAGAGCTGCTGCTTCTCCACTGCTTGCCCTTGG
GCTATCTGGTTGACTCTCTTCCCATTGTTTACAGTGAAGGTGTCATTCACAAAAACTCAAGGAC
TACTGTTCTCTTCCCTTCTCTTCCTTTACTCCTGGCTCTTGCACCATCCTCAACCCTCTCCAGC
ATAGAAACTACTAAGCTAAAGGCTCTGTCAAGAAGCTGGTGGTGTGGCCAAGAAGATAGGGGAA
GACGACAGCCCTGGGCTGGAGAACGTCTCCACGTCCCAGATGTGTCTGGTAGTATGGTTTCCTC
CTTCTGTGCCTGGGTAACCCCTCAGCCCAGCTGGCCACAGGGTTCTGGTCCCTTTCTTGGTCCC
TCCCTCCCTCCCTCCCTCCCTCCTGTGAAGTTACACTCTGGGACACAAGCTGTGAGCAATCTGC
AGTCTACTGTCCCTGTGTATTGGCATTCTTAGCTTTTTTGACAAGCAGATCCTTTGCTCCAGGC
TGTAGCAAAACAAGCCTGTGGTTCTGAGCAAAGGAGAAGAAACTGACTTTATTGCACTTTTAGT
TTGGGGGTTTGTTTTTTTTATTTTGTAAACAACATGGCAGATGCATATTGTGTCTGGTTATATT
GGGGGGTTACTTTTTTCTTTTTTCAAGGGGGATGGGCCAGCCAAGCCATTCAGAGAAAATGTGG
GTCCAGAGGACATTCTTGATGGAAAGAGTCTGATTTGCAGCACTTGGAAGAGAAGAAGCCAAAC
TCTGCGTCATCCTGAGTAAATACTCAGGTTGGCAAGGAAACATACTTGAATTTTCATTCATCTT
CTCTGCTGCAGAAAAAAGTCCCCACCAGAGCCCCTTGACCTAATCAGCCCAGAGCTGGAAAGCC
CAGCTCCTGAGCACTTGGGATGAGCACCGAGCCAGACTGTGACGACCAGAAGGCACCTCACCTC
AGAGAGGAGATACTTAACAACAACAACAAAACAAAATTTCTGTTTCCTCCACTGCCAGGGACTT
CCTACTAGATAGCCATGTGACTTTCTGTTGACTCGGGGAACAAAATTAGTGACTAAACAGCCAC
CACCATATTGCCAGTAGTGGACAAAAGAAGGCACCAAATTTGCCTTCCAACTGCCAGAGGAAGC
TCAGGATGCAGCATCCTAGGGCCATGAAAAGAAAAATAAATATTTTCTGTCTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_017595892 ⟹ XP_017451381

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,760 - 66,563,887 (+)	NCBI
Rnor_6.0	8	71,533,372 - 71,678,209 (+)	NCBI

Sequence:

show sequence

GCACTTCCGGCTTGGCTCCGGCCGCCCCTCAACTGGTCTTCCCCCTCCCCTCCGCCTCCTCGTC
TCCCTCCCGCTCCTGGGAAAGCAAAGCTGCGGCTTAAGGGGTGGTTGAGAGAAGCAGTCGTTGC
CTCAGGGAGGGGACCGCGTCCGCCCCCTTGGAACAGTGGAACACGGCTGATACAGGAGGACAGG
TGTGAGGCCAGTACACCTTTGACTCAATGGGGCTTAATTGGTTACAAAATGTCCTCCTATGCAT
GAGATCTACAGACTATATGTTCTTCAAGAACTGATCAGTGGTTTTCACCTTCTGGAAGAACATT
AGAAGCATAAATATGGTGCCAAAACTCCTCATTCTCTGACTGTGGTGATCTGGACCTACTTTTG
TGTTGAAGAGAAGTATACACGCTGAGGTCACTCATTGTTCAGAGACTGTCGTGTAGGAACATGG
ACCATTCTAATAGAGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATAC
ACACTGTTCCCGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTC
AGGGTTGGCAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACA
CCAATGAATATGTAGCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGA
GTACAGGTTTTATAAACAGCTCGGCAGTGCAGGTGAAGGTCTCCCACAGGTTTATTACTTTGGA
CCATGTGGGAAGTACAATGCCATGGTGCTGGAACTCCTCGGCCCTAGCTTGGAAGACTTGTTTG
ACCTCTGTGACCGAACGTTTACTTTGAAGACGGTGTTAATGATAGCCATCCAGTTGCTTTCTCG
AATGGAGTATGTACACTCAAAGAATCTCATTTACCGAGATGTCAAACCAGAGAACTTCTTGATT
GGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGATTTTGGACTGGCCAAGGAAT
ACATTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGCTTAACTGGAACTGC
GCGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGGGATGATTTGGAAGCC
CTGGGCCATATGTTCATGTACTTCCTTCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGATA
CATTAAAAGAGAGATATCAGAAAATTGGTGATACCAAAAGGAGTACTCCCATCGAAGCTCTCTG
TGAGAACTTTCCAGAGGAGATGATGACCTACCTTCGATATGTCAGGAGATTAGACTTCTTTGAA
AAACCTGATTATGAGTATTTACGGAACCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACTT
TTGACTATGCCTATGATTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGA
TTCTGGTGCATCTGCAATAACTCGAGAAAGCCACACACACAGGGATCGACCATCACAACAACAG
CCTCTTAGAAATCAGCCAAGATCTTTAACAGCAGAGTGGTTTGTGCTGGCTCCCCTTTCCCACC
CTCCAGCACCCACATAAGCAGGAGTCATGTGCTGGCAGTGAAAGCAGGTGGCAGGAGCGGCTGC
ACAACAAGACAAGCCTGATCGGGTCCACACTAACCAGATGACAGGAGTGGGAGACAGAGCCTTC
ATTGACAGTTCGGGGACCATCAGTGAGCAGTGGGATGACAGTGAACCTGAAATAAAGGCCATTG
AAATAAGA

hide sequence

RefSeq Acc Id:

XM_039082074 ⟹ XP_038938002

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,784 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082075 ⟹ XP_038938003

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,784 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082077 ⟹ XP_038938005

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,439,784 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082078 ⟹ XP_038938006

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,486,040 - 66,577,247 (+)	NCBI

RefSeq Acc Id:

XM_039082079 ⟹ XP_038938007

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	66,486,045 - 66,577,247 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_071624	(Get FASTA)	NCBI Sequence Viewer
	XP_008764554	(Get FASTA)	NCBI Sequence Viewer
	XP_008764556	(Get FASTA)	NCBI Sequence Viewer
	XP_008764557	(Get FASTA)	NCBI Sequence Viewer
	XP_017451375	(Get FASTA)	NCBI Sequence Viewer
	XP_017451379	(Get FASTA)	NCBI Sequence Viewer
	XP_017451380	(Get FASTA)	NCBI Sequence Viewer
	XP_017451381	(Get FASTA)	NCBI Sequence Viewer
	XP_038938002	(Get FASTA)	NCBI Sequence Viewer
	XP_038938003	(Get FASTA)	NCBI Sequence Viewer
	XP_038938005	(Get FASTA)	NCBI Sequence Viewer
	XP_038938006	(Get FASTA)	NCBI Sequence Viewer
	XP_038938007	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52200	(Get FASTA)	NCBI Sequence Viewer
	AAH78831	(Get FASTA)	NCBI Sequence Viewer
	EDL95840	(Get FASTA)	NCBI Sequence Viewer
	EDL95841	(Get FASTA)	NCBI Sequence Viewer
	EDL95842	(Get FASTA)	NCBI Sequence Viewer
	Q62761	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_071624 ⟸ NM_022288

- UniProtKB:

Q62761 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQPRSLTAEWFVLAPLS
HPPAPT

hide sequence

RefSeq Acc Id:

XP_008764554 ⟸ XM_008766332

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS
RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEAKCCCFFK
RKRKKTAQRHK

hide sequence

RefSeq Acc Id:

XP_008764557 ⟸ XM_008766335

- Peptide Label:

isoform X5

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQVVSSTNGELNVDDPT
GAHSSAPITAHAEVEVVEEAKCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:	XP_008764556 ⟸ XM_008766334
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K7C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS RQTNTSYLTSHLAADRHGGSVQPRSLTAEWFVLAPLSHPPAPT hide sequence

RefSeq Acc Id:

XP_017451375 ⟸ XM_017595886

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS
RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN
LWCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:

XP_017451380 ⟸ XM_017595891

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQVVSSTNGELNVDDPT
GAHSSAPITAHAEVEVVEEANCLKMLNLWCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:	XP_017451381 ⟸ XM_017595892
- Peptide Label:	isoform X6
- UniProtKB:	Q62761 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQPRSLTAEWFVLAPLS HPPAPT hide sequence

RefSeq Acc Id:

XP_017451379 ⟸ XM_017595890

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS
RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN
LWCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:

XP_017451376 ⟸ XM_017595887

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS
RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN
LWCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:

XP_017451377 ⟸ XM_017595888

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS
RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN
LWCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:

XP_017451378 ⟸ XM_017595889

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNL
YTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDL
FDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAK
EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA
DTLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGY
TFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPS
RQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSSAPITAHAEVEVVEEANCLKMLN
LWCCCFFKRKRKKTAQRHK

hide sequence

RefSeq Acc Id:

ENSRNOP00000074148 ⟸ ENSRNOT00000090096

RefSeq Acc Id:

ENSRNOP00000048274 ⟸ ENSRNOT00000042369

RefSeq Acc Id:	XP_038938003 ⟸ XM_039082075
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038938002 ⟸ XM_039082074
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038938005 ⟸ XM_039082077
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038938006 ⟸ XM_039082078
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038938007 ⟸ XM_039082079
- Peptide Label:	isoform X7

Protein Domains

Protein kinase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
8	71329563	71329564	T	A	snv	WKY/Gcrc (KNAW), WKY/NHsd (KNAW), WKY/NCrl (KNAW), WKY/N (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
8	71620365	71620366	G	T	snv	LEW/Crl (RGD)
8	71660073	71660074	T	A	snv	WKY/NHsd (RGD), WKY/Gcrc (RGD), WKY/N (MCW), WKY/NCrl (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
8	70283451	70283452	T	A	snv	WKY/N (KNAW), WKY/Gcrc (ICL), WKY/NHsd (ICL), LCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), WKY/NCrl (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621404	AgrOrtholog
Ensembl Genes	ENSRNOG00000016620	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000048274	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000074148	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042369	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000090096	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134461	IMAGE-MGC_LOAD
InterPro	Casein_kinase-1_gamma_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64086	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93447	IMAGE-MGC_LOAD
NCBI Gene	64086	ENTREZGENE
Pfam	CK1gamma_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pkinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Csnk1g1	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K7C4	ENTREZGENE, UniProtKB/TrEMBL
	KC1G1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Csnk1g1	casein kinase 1, gamma 1		casein kinase 1 gamma 1	Name updated	1299863	APPROVED
2002-08-07	Csnk1g1	casein kinase 1 gamma 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	390 amino acids; 45 kDa	727981

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)