Csnk1g1 (casein kinase 1, gamma 1) - Rat Genome Database

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Gene: Csnk1g1 (casein kinase 1, gamma 1) Rattus norvegicus
Analyze
Symbol: Csnk1g1
Name: casein kinase 1, gamma 1
RGD ID: 621404
Description: Enables protein serine/threonine kinase activity. Involved in protein autophosphorylation. Predicted to be located in cytosol. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Orthologous to human CSNK1G1 (casein kinase 1 gamma 1); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; Wnt signaling, canonical pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: casein kinase 1 gamma 1; casein kinase I; casein kinase I isoform gamma-1; CKI-gamma 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2866,439,760 - 66,577,247 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)Ensembl
Rnor_6.0871,533,372 - 71,688,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl871,547,468 - 71,679,666 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0871,261,296 - 71,358,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,193,231 - 70,301,592 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1870,212,284 - 70,320,646 (+)NCBI
Celera865,843,343 - 65,952,588 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
cytosol  (ISO)
nucleus  (IBA)
plasma membrane  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
3. Wnt signalling and its impact on development and cancer. Klaus A and Birchmeier W, Nat Rev Cancer. 2008 May;8(5):387-98.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. Casein kinase I gamma subfamily. Molecular cloning, expression, and characterization of three mammalian isoforms and complementation of defects in the Saccharomyces cerevisiae YCK genes. Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24.
Additional References at PubMed
PMID:15489334   PMID:22871113   PMID:25500533  


Genomics

Comparative Map Data
Csnk1g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2866,439,760 - 66,577,247 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)Ensembl
Rnor_6.0871,533,372 - 71,688,483 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl871,547,468 - 71,679,666 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0871,261,296 - 71,358,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,193,231 - 70,301,592 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1870,212,284 - 70,320,646 (+)NCBI
Celera865,843,343 - 65,952,588 (+)NCBICelera
Cytogenetic Map8q24NCBI
CSNK1G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381564,165,525 - 64,356,173 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1564,165,525 - 64,356,173 (-)EnsemblGRCh38hg38GRCh38
GRCh371564,457,724 - 64,648,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361562,244,769 - 62,435,495 (-)NCBINCBI36hg18NCBI36
Build 341562,250,880 - 62,379,879NCBI
Celera1541,336,661 - 41,526,451 (-)NCBI
Cytogenetic Map15q22.31NCBI
HuRef1541,282,388 - 41,472,528 (-)NCBIHuRef
CHM1_11564,577,245 - 64,767,981 (-)NCBICHM1_1
T2T-CHM13v2.01561,972,701 - 62,165,717 (-)NCBI
Csnk1g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,816,235 - 65,952,297 (+)NCBIGRCm39mm39
GRCm39 Ensembl965,816,206 - 65,952,297 (+)Ensembl
GRCm38965,908,968 - 66,045,015 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,908,924 - 66,045,015 (+)EnsemblGRCm38mm10GRCm38
MGSCv37965,756,817 - 65,892,821 (+)NCBIGRCm37mm9NCBIm37
MGSCv36965,707,016 - 65,843,020 (+)NCBImm8
Celera963,147,988 - 63,280,802 (+)NCBICelera
Cytogenetic Map9CNCBI
Csnk1g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545011,102,257 - 11,233,601 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545011,088,601 - 11,239,227 (+)NCBIChiLan1.0ChiLan1.0
CSNK1G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11561,410,414 - 61,594,180 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1561,410,414 - 61,594,180 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01543,117,845 - 43,302,134 (-)NCBIMhudiblu_PPA_v0panPan3
CSNK1G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13028,661,726 - 28,832,193 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3028,654,200 - 28,788,801 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3028,581,269 - 28,750,826 (-)NCBI
ROS_Cfam_1.03028,838,185 - 29,007,849 (-)NCBI
ROS_Cfam_1.0 Ensembl3028,838,575 - 29,007,582 (-)Ensembl
UMICH_Zoey_3.13028,772,289 - 28,942,374 (-)NCBI
UNSW_CanFamBas_1.03028,834,575 - 29,004,312 (-)NCBI
UU_Cfam_GSD_1.03029,073,782 - 29,243,814 (-)NCBI
Csnk1g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640106,794,274 - 106,947,520 (-)NCBI
SpeTri2.0NW_00493647124,642,337 - 24,795,633 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK1G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1107,690,065 - 107,884,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11107,690,049 - 107,884,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,712,242 - 118,792,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK1G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12619,164,948 - 19,374,016 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2619,164,986 - 19,372,834 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048122,020,590 - 122,233,227 (-)NCBIVero_WHO_p1.0
Csnk1g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247818,286,571 - 8,395,282 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247818,210,988 - 8,400,065 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132202  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0871,248,651 - 71,248,854NCBIRnor5.0
Rnor_5.0871,229,722 - 71,229,925NCBIRnor5.0
RGSC_v3.4870,203,320 - 70,203,522UniSTSRGSC3.4
Celera1837,122,060 - 37,122,262UniSTS
Celera865,853,424 - 65,853,626UniSTS
Cytogenetic Map8q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:102
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000042369
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 15 10 2 13 8
Low 3 43 45 41 4 41 8 11 64 33 28 3 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U22296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000042369   ⟹   ENSRNOP00000048274
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,453,503 - 66,562,546 (+)Ensembl
Rnor_6.0 Ensembl871,547,468 - 71,678,214 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090096   ⟹   ENSRNOP00000074148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,562,552 (+)Ensembl
Rnor_6.0 Ensembl871,591,360 - 71,679,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096791   ⟹   ENSRNOP00000082082
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096879   ⟹   ENSRNOP00000090680
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,572,826 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116171   ⟹   ENSRNOP00000082115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl866,439,864 - 66,572,204 (+)Ensembl
RefSeq Acc Id: NM_022288   ⟹   NP_071624
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,453,503 - 66,562,546 (+)NCBI
Rnor_6.0871,569,180 - 71,678,214 (+)NCBI
Rnor_5.0871,261,296 - 71,358,274 (+)NCBI
RGSC_v3.4870,193,231 - 70,301,592 (+)RGD
Celera865,843,343 - 65,952,588 (+)RGD
Sequence:
RefSeq Acc Id: XM_008766332   ⟹   XP_008764554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766334   ⟹   XP_008764556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,760 - 66,563,887 (+)NCBI
Rnor_6.0871,533,372 - 71,678,209 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766335   ⟹   XP_008764557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595886   ⟹   XP_017451375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595890   ⟹   XP_017451379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,440,042 - 66,577,247 (+)NCBI
Rnor_6.0871,533,736 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595891   ⟹   XP_017451380
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,760 - 66,577,247 (+)NCBI
Rnor_6.0871,533,372 - 71,688,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595892   ⟹   XP_017451381
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,760 - 66,563,887 (+)NCBI
Rnor_6.0871,533,372 - 71,678,209 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082074   ⟹   XP_038938002
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,784 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082075   ⟹   XP_038938003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,784 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082077   ⟹   XP_038938005
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,439,784 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082078   ⟹   XP_038938006
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,486,040 - 66,577,247 (+)NCBI
RefSeq Acc Id: XM_039082079   ⟹   XP_038938007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2866,486,045 - 66,577,247 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_071624   ⟸   NM_022288
- UniProtKB: Q62761 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764554   ⟸   XM_008766332
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008764557   ⟸   XM_008766335
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008764556   ⟸   XM_008766334
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K7C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451375   ⟸   XM_017595886
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451380   ⟸   XM_017595891
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017451381   ⟸   XM_017595892
- Peptide Label: isoform X6
- UniProtKB: Q62761 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451379   ⟸   XM_017595890
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000074148   ⟸   ENSRNOT00000090096
RefSeq Acc Id: ENSRNOP00000048274   ⟸   ENSRNOT00000042369
RefSeq Acc Id: XP_038938003   ⟸   XM_039082075
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938002   ⟸   XM_039082074
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938005   ⟸   XM_039082077
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938006   ⟸   XM_039082078
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938007   ⟸   XM_039082079
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000082115   ⟸   ENSRNOT00000116171
RefSeq Acc Id: ENSRNOP00000082082   ⟸   ENSRNOT00000096791
RefSeq Acc Id: ENSRNOP00000090680   ⟸   ENSRNOT00000096879
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62761-F1-model_v2 AlphaFold Q62761 1-390 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 71620365 71620366 G T snv LEW/Crl (RGD)
8 71660073 71660074 T A snv WKY/NCrl (RGD), WKY/N (2020), WKY/NHsd (RGD), WKY/NCrl (2019), WKY/N (MCW), WKY/Gcrc (RGD)


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 71329563 71329564 T A snv WKY/Gcrc (KNAW), WKY/NHsd (KNAW), WKY/NCrl (KNAW), WKY/N (KNAW)


Assembly: RGSC_v3.4
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 70283451 70283452 T A snv WKY/N (KNAW), WKY/NCrl (ICL), WKY/Gcrc (ICL), LCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), WKY/NHsd (ICL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621404 AgrOrtholog
BioCyc Gene G2FUF-30038 BioCyc
Ensembl Genes ENSRNOG00000016620 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048274 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000074148 ENTREZGENE
  ENSRNOP00000074148.1 UniProtKB/TrEMBL
  ENSRNOP00000082082 ENTREZGENE
  ENSRNOP00000082082.1 UniProtKB/TrEMBL
  ENSRNOP00000082115 ENTREZGENE
  ENSRNOP00000082115.1 UniProtKB/TrEMBL
  ENSRNOP00000090680 ENTREZGENE
  ENSRNOP00000090680.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042369 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000090096 ENTREZGENE
  ENSRNOT00000090096.2 UniProtKB/TrEMBL
  ENSRNOT00000096791 ENTREZGENE
  ENSRNOT00000096791.1 UniProtKB/TrEMBL
  ENSRNOT00000096879 ENTREZGENE
  ENSRNOT00000096879.1 UniProtKB/TrEMBL
  ENSRNOT00000116171 ENTREZGENE
  ENSRNOT00000116171.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134461 IMAGE-MGC_LOAD
InterPro Casein_kinase-1_gamma_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64086 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93447 IMAGE-MGC_LOAD
NCBI Gene 64086 ENTREZGENE
Pfam CK1gamma_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csnk1g1 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K7C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUI8_RAT UniProtKB/TrEMBL
  A0A8I5ZWD5_RAT UniProtKB/TrEMBL
  A0A8I6AAK7_RAT UniProtKB/TrEMBL
  KC1G1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Csnk1g1  casein kinase 1, gamma 1    casein kinase 1 gamma 1  Name updated 1299863 APPROVED
2002-08-07 Csnk1g1  casein kinase 1 gamma 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 390 amino acids; 45 kDa 727981