Abcg4 (ATP binding cassette subfamily G member 4)

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Gene: Abcg4 (ATP binding cassette subfamily G member 4) Rattus norvegicus

Analyze

Symbol:

Abcg4

Name:

ATP binding cassette subfamily G member 4

RGD ID:

1305840

Description:

Predicted to enable ABC-type sterol transporter activity; ATP hydrolysis activity; and protein dimerization activity. Predicted to be involved in cholesterol efflux and cholesterol homeostasis. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Predicted to be located in endosome membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

ATP-binding cassette sub-family G member 4; ATP-binding cassette subfamily G member 4; ATP-binding cassette, sub-family G (WHITE), member 4; ATP-binding cassette, subfamily G (WHITE), member 4; LOC300664

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABCG4 (ATP binding cassette subfamily G member 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Abcg4 (ATP binding cassette subfamily G member 4)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Abcg4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABCG4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABCG4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abcg4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABCG4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABCG4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abcg4 (ATP binding cassette subfamily G member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ABCG4 (ATP binding cassette subfamily G member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Abcg4 (ATP binding cassette subfamily G member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	abcg4a (ATP-binding cassette, sub-family G (WHITE), member 4a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Atet	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG17646	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG31689	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|TreeFam)
Drosophila melanogaster (fruit fly):	CG32091	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|TreeFam)
Drosophila melanogaster (fruit fly):	CG4822	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|TreeFam)
Drosophila melanogaster (fruit fly):	CG5853	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Drosophila melanogaster (fruit fly):	CG9663	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG9664	Alliance	DIOPT (Ensembl Compara\|OMA\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	PDR18	Alliance	DIOPT (Ensembl Compara\|OrthoInspector)
Caenorhabditis elegans (roundworm):	wht-4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA)
Saccharomyces cerevisiae (baker's yeast):	YOL075C	Alliance	DIOPT (OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	44,611,187 - 44,629,818 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	44,611,187 - 44,626,881 (-)	Ensembl
Rnor_6.0	8	48,604,915 - 48,626,219 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,606,403 - 48,619,592 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,222,818 - 47,239,879 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,251,688 - 47,267,439 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	47,260,443 - 47,276,083 (-)	NCBI
Celera	8	44,197,283 - 44,212,991 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 11, Partial Trisomy 11q (ISO)

congenital disorder of glycosylation Ij (ISO)

congenital myasthenic syndrome 13 (ISO)

Dwarfism (ISO)

long QT syndrome 10 (ISO)

prostate cancer (ISO)

RASopathy (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP)

butanal (ISO)

cisplatin (ISO)

dibutyl phthalate (ISO)

endosulfan (EXP)

exemestane (ISO)

fenvalerate (EXP)

folic acid (ISO)

indole-3-methanol (EXP)

lead(0) (ISO)

lead(2+) (ISO)

methotrexate (ISO)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

nitrofen (EXP)

oxaliplatin (EXP)

paracetamol (EXP)

pentanal (ISO)

potassium dichromate (ISO)

propanal (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

testosterone (EXP,ISO)

topotecan (EXP)

triptonide (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to high density lipoprotein particle stimulus (IEA,ISO)

cellular response to leukemia inhibitory factor (ISO)

cholesterol efflux (IBA,ISO,ISS)

cholesterol homeostasis (ISO,ISS)

positive regulation of cholesterol biosynthetic process (IEA,ISO)

positive regulation of cholesterol efflux (IEA,ISO)

regulation of transcription, DNA-templated (IEA,ISO)

sterol transport (ISO,ISS)

transmembrane transport (IEA)

Cellular Component

cytoplasmic vesicle (ISO,ISS)

endosome (ISO)

endosome membrane (ISO,ISS)

integral component of membrane (IEA)

plasma membrane (IBA,ISO,ISS)

Molecular Function

ABC-type sterol transporter activity (ISO,ISS)

ATP binding (IEA)

ATP hydrolysis activity (ISO,ISS)

identical protein binding (ISO,ISS)

obsolete ATP hydrolysis activity (ISS)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16556852	PMID:16870176	PMID:20439489	PMID:34256330

Genomics

Comparative Map Data

Abcg4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	44,611,187 - 44,629,818 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	44,611,187 - 44,626,881 (-)	Ensembl
Rnor_6.0	8	48,604,915 - 48,626,219 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,606,403 - 48,619,592 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,222,818 - 47,239,879 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,251,688 - 47,267,439 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	47,260,443 - 47,276,083 (-)	NCBI
Celera	8	44,197,283 - 44,212,991 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

ABCG4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	119,149,052 - 119,162,653 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	119,149,052 - 119,162,666 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	119,019,762 - 119,033,375 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,524,960 - 118,538,585 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	11	118,524,959 - 118,538,582	NCBI
Celera	11	116,179,542 - 116,193,169 (+)	NCBI
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,959,176 - 114,972,795 (+)	NCBI		HuRef
CHM1_1	11	118,906,025 - 118,919,644 (+)	NCBI		CHM1_1

Abcg4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,184,485 - 44,199,953 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	44,184,485 - 44,199,912 (-)	Ensembl
GRCm38	9	44,273,188 - 44,288,656 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,273,188 - 44,288,615 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,081,273 - 44,096,327 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	44,024,185 - 44,039,239 (-)	NCBI			mm8
Celera	9	41,524,179 - 41,542,258 (-)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI

Abcg4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	20,256,293 - 20,271,278 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	20,256,467 - 20,270,172 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABCG4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	117,912,156 - 117,929,636 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,916,043 - 117,929,636 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	113,987,709 - 114,001,354 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ABCG4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	14,707,964 - 14,720,782 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	14,707,960 - 14,721,240 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	14,761,090 - 14,774,692 (-)	NCBI
ROS_Cfam_1.0	5	14,651,354 - 14,664,956 (-)	NCBI
ROS_Cfam_1.0 Ensembl	5	14,651,065 - 14,664,525 (-)	Ensembl
UMICH_Zoey_3.1	5	14,789,439 - 14,803,035 (-)	NCBI
UNSW_CanFamBas_1.0	5	14,693,637 - 14,707,228 (-)	NCBI
UU_Cfam_GSD_1.0	5	14,733,867 - 14,747,471 (-)	NCBI

Abcg4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	101,169,434 - 101,184,594 (+)	NCBI
SpeTri2.0	NW_004936542	4,090,282 - 4,106,025 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCG4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,336,155 - 46,380,544 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,364,546 - 46,380,545 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,400,073 - 51,415,683 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCG4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,522,773 - 110,537,747 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	1	110,524,900 - 110,537,735 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666043	15,496,242 - 15,509,994 (-)	NCBI	Vero_WHO_p1.0

Abcg4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624784	14,529,957 - 14,545,125 (+)	NCBI	HetGla_female_1.0		hetGla2

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	269
Count of miRNA genes:	146
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000012534
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3								54		5
Low		32	36	22	18	22			20	27	28	11
Below cutoff		11	16	14	1	14	7	10		8	7		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012534 ⟹ ENSRNOP00000012534

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	44,611,187 - 44,626,881 (-)	Ensembl
Rnor_6.0 Ensembl	8	48,606,403 - 48,619,592 (-)	Ensembl

RefSeq Acc Id:

NM_001106816 ⟹ NP_001100286

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,611,187 - 44,626,757 (-)	NCBI
Rnor_6.0	8	48,604,915 - 48,620,482 (-)	NCBI
Rnor_5.0	8	47,222,818 - 47,239,879 (-)	NCBI
RGSC_v3.4	8	47,251,688 - 47,267,439 (-)	RGD
Celera	8	44,197,283 - 44,212,991 (-)	RGD

Sequence:

show sequence

GCTGGGGACCAGACTACGAAAACCCAGCGGGTTCATCCAAGCAGGGTCGCAGCGAGATCTCAAC
CATCCATCCCTCCACAACCGTGTCATCCTTTCTGACCGGAGCCCTGCCTTCCTCTACTGCCCGC
CCTGGCCTAGCCCCGCCCCGGCCCGGGCTACCGGGACAGGGAGCCGGGGCGCCGGTGCCGCAGC
CAGAGGCAGGTGAAGAGAGCCGGGAGTGTCCTCCTGCGCCGCAACGCTGAGCATCTGGGTCGAA
CATCCTGGTTGAGCATCTCTGCTGAGCATCCTTGCGTCGCGGCGGCCGGAGACGCGTCAAGGCC
AGCTGCGTGATGGCGGAGAAGGCACTGGAGGCTGTGGGCTGTGGACTGGGCCCTGGGGCTGTGG
CCATGGCCGTGGCGCTGGAGGACGGGGCAGAGCCCCCTGTGCTGACCACGCACCTAAAGAAGGT
GGAGAACCATATCACAGAAGCACAGCGGTTCTCTCACCTGCCCAAGCGCTCTGCTGTGGACATC
GAGTTCGTGGAACTATCCTATTCCGTGCGGGAGGGGCCCTGCTGGCGCAAACGGGGTTATAAGA
CCCTCCTCAAGTGCCTGTCTGGTAAGTTCTGCCGCCGAGAGCTGATTGGCATTATGGGCCCCTC
TGGGGCTGGCAAATCCACGTTCATGAACATCTTGGCAGGGTACAGGGAGTCGGGGATGAAGGGG
CAGATCCTGGTTAACGGGAGGCCACGCGATCTGAGGACCTTTCGCAAGATGTCCTGCTACATCA
TGCAGGATGACATGCTTCTGCCTCACCTCACGGTGCTAGAGGCCATGATGGTCTCTGCCAACCT
GAAGCTGAGTGAGAAGCAAGAGGTGAAGAAGGAACTGGTGACAGAGATCCTGACAGCCCTGGGA
CTGATGTCCTGCTCTCACACAAGGACAGCCCTGCTCTCTGGAGGGCAGAGGAAGCGCCTGGCCA
TTGCTCTGGAGCTGGTCAACAACCCGCCTGTCATGTTCTTTGATGAGCCTACCAGCGGTCTAGA
CAGCGCTTCTTGTTTCCAAGTGGTGTCCCTCATGAAGTCCCTGGCCCATGGGGGCCGCACCGTC
ATCTGCACCATCCACCAGCCCAGTGCCAAGCTCTTTGAGATGTTTGACAAGCTCTACATCCTGA
GCCAGGGACAGTGCATCTTCAAGGGCGTGGTTACCAACCTGATTCCCTATTTGAAGGGGCTTGG
CTTGCACTGCCCCACCTACCACAACCCCGCTGACTTCATCATTGAGGTGGCCTCTGGAGAGTAT
GGAGACCTGAACCCCATGCTGTTCAGGGCTGTGCAGAATGGCCTTTGCACCATGGCCGAGAAGA
AGAGCAGCCCCGAGAAGAATGAGGTCCCTGCCCACTGTCCCACTTGCCCTCCGGAACTGGATCC
CATTGAAAGCCACACGTTTGCCACCAGCACCCTCACCCAGTTCTGCATCCTCTTCAGGAGGACT
TTCTTGTCCATCCTCAGGGACACGGTCCTGACCCACTTGCGGTTCATGTCACATGTGTTGATCG
GCGTCCTCATTGGTCTCCTCTACCTGCACATCGGCGATGATGCCAGCAAGGTCTTCAACAACAC
CGGCTTCCTCTTCTTTTCCATGCTCTTCCTCATGTTTGCAGCCCTCATGCCGACTGTGCTCACC
TGTGAGCTGATCTGCCTGGCGAAGATGGCAGTCTTCATGAGGGAGCACCTGAACTACTGGTACA
GTCTCAAAGCATATTACCTGGCCAAGACGATGGCTGATGTACCCTTCCAGGTTGTGTGCCCAGT
GGTGTACTGCAGCATTGTGTACTGGATGACTGGCCAGCCGGCTGAGACCAGCCGCTTCCTGCTC
TTCTCAGCCTTGTCCATAGCTACCGCCTTAGTTGCCCAGTCTTTGGGACTCTTGATTGGCGCTG
CTTCTACCTCCTTGCAGGTGGCCACCTTTGTGGGCCCAGTCACTGCCATCCCTGTCCTCTTGTT
CTCTGGCTTCTTTGTCAGTTTCAAGACCATCCCCACTTACCTGCAATGGAGCTCCTACCTTTCC
TATGTCAGGTATGGCTTTGAGGGTCTGATCCTGACCATCTATGGCATGGAGAGAGGACATCTGA
CCTGCTTAGAGGATCACTGCCCATTCCGGGACCCACAGATCATCTTGCATGAGCTGGATGTGGA
GGAGGCCAAGCTCTACATGGACTTCCTGGTCCTGGGCATTTTCTTCCTTGCCCTGCGGCTGCTT
GCATACCTTGTGCTTCGGTACCGGGTCAAGTCTGAGAGATAGAGCCTGGCTCCTACCTCTTCTG
GGCAGGACGCCCCCAGTTCCAGCCCTTTGGGACTGTTTTAAACTTGTAGACTTGGGTGTCGGTT
GCTGGTGCGGCTGCCCTCCTCTCCCTCAGCTGCTTCACAGGCCGGCTGGCTGGCTGTGGGCCGT
GGCTCCCAGCCTCAGCACCAGAGGTAGGGCTCCAGCCCTCCCATCAAGGCCAGGAGTCTTCCCA
AGTTGAAGCAGTTTGTAGCTTCCTCCCTACTGTCTCCAACACCTGCATGCAAAGACTGCTGGGA
GGCTGCCGCCCTCCTCTGCCGAAAGCACCCTCCTCTGTTGATTACTTGGGAGCTCCATGTTCTC
TAAGCCTTGACTTACAAGCAAGCAATCAGATTGACCCCCTCTGGGGTCCCCGCCACACAAGTGT
TGGTAAACTGTTATCATGTTGGAGTCCCAGGGCTGGGCCCTGATGGGGTCCCCAGGGAGTCCCA
TCACGGACATTGGATGGAGTAAGGAGGGACTCTGGAAGCTTCCTCCTCCTCCCCTTTTCTCCCC
ACACCCACTTTGGCTAATTTGGACCATCTGTTGAGACAGAAGCCGGGCTTTCTGTCTGGCCCAC
CACTCCCAATCCTGGAGATTGGAGAGAGCATGGGATGTCCCAGCCCCTTCCCTAAGCCTTTGGT
CAAGGTAGATCTCAATGTCACCTCTGCAATAATGTCTGTGTCACTCTCCCATCTGCCACAGGAA
CTAGAGAATGTACTTTATTCTGGGGAGGAAGGTGAGCCGGGGAAGCCCCCACCCTCCTTCTTTG
CTGCTCCTGAGGCTCAGTTCCACAGGCTCCTTTCCTCTCCAGAGTCACATCACAGGCACACAAA
GGCCACCAGGCGATCTCAGCCCTACACAGGCACCACCCCTTATGGCTCAGAGGAAGAGTGACCA
TGGCAGGGAGCTGATGGTGGTGGCAGGAGGGCAGTCCCAATGTCCTCCTGCAGAATCCCACTTT
GGAGGCTAAGAACGAGGCTGGTGTGACCCAGTGTGGCTCCAGGCTCAGCAGGTGTCTATCTCCC
AGTCTTCCCTCCCTCTTGAGCCAGGGGTGGCACTGGCCTCCTGGAGGTCAGAACCCAACAAGCA
CAAGAATGGGCATAGCTGGCTTCAGCCACTGCTCCCCATGGCCCTCCTTTTGTGCCCCATGCTG
ACACTCGCTCTCCTGCCCCTTCTCCAGCTGCCTGCTGCTCACTCAAACTTCTGTTCACATATAT
TCATCTTCCAGTCAGCAGCTGGGTCCTGGACATCAGAGCAGCGGGGCCTGGATGCCAGGAGGCA
GACACAGCTGTGTCTTCTCTTGGTGGGTCCGGGATCATCCTATAGCTGGTTTCTCCTCCTCCAG
GACTCTTCCCCAGTCCCTGTGCTCACTCCTCTGTATCTGCTCCAGGTTATTCTCATCACAGAGA
GACCAGTTGTATTTGTGGGATTTCACCCATTATTAATAAAACCTATATTTATACAGTA

hide sequence

RefSeq Acc Id:

XM_006242915 ⟹ XP_006242977

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,611,187 - 44,626,757 (-)	NCBI
Rnor_6.0	8	48,604,915 - 48,626,219 (-)	NCBI
Rnor_5.0	8	47,222,818 - 47,239,879 (-)	NCBI

Sequence:

show sequence

CCAGCCCTCCAGCAGATCTCTTGAGTGGTAGGTCAGGCTGGTCTAAGTTCCAGGCAGCCAGGGC
TATGCAGAGAAAGACTGTCTCAGATAATACAGGTAAAATTAGTAAAAAAAAAAAAAAAAAAAAA
AAAAAGATTTTGCTCTTGTTTCTGCTCTGTTTGCTCTTCCTCCTCCCTCCTCATTTCCCTCTCC
CATCTCTCACCATGCTCTCATGGCCAGCCTCAACTCCTCTATTCTCTCCCTGACTTTCTTTATC
TTTACTCTCTCAACTCCCCTCCCCATGCCCTGAATAAACTCTAGTCTAGACTTAAAAAAAACAA
TCTATCAATTCCTATTGAGTCTTTGCTATAGCTTAGGCAGATTACTAAAAACACAAAGATACGA
ACTTGGGACTTTGCTGCTGGAGGGCCTTGCAAACAGGACAAGAGTGACAGAGAGCCAGAGTCAG
AAGAGAGGCTTGGGTGGAGCTCAGGAAGATCCTGCTTATCATGGAAGATGACGGTGGAGATGGT
TAGTTAGACATAGTTACATGTAGAAGTTAGGAAAGACGATCCAGGAAGAGGCTTCCTCATAACC
AATAACAGAAGGCACCTTAGAAGGATTGCAGCGCAGCGCCTAATTTTCTCATGTGCATACGTAA
CAAAAATTGAAAATACTGAACCCTAACTTTGAAGGGTTTGGTGCGATGGGGATACAGGGACCCA
GGAGTTAGGAACTATGGAGACTGCTTCTGTGGGACAAGTCCACACCCTCAGAAGAGTGCCTGAA
TATTAAATGAATGAGTAAACTGCTCAGGACTGTAATAAATGGAAAAGCATGATCCTTCCGTGTG
TTGTAGCAGGAAGAGGTGAAAAAAAATCATCCCCAGACCATGTTGGGAATTGAACTCTGGTCCT
TTAGAGGCAAAAAAGATGAGCCAGAGGGTGTTACAAGACTTCAAGTTCTACTGAGGGAAGGAAG
CTAAAGAAACAGTCTTTGGTTAAGATCATGACCTTATAGTATTTACCTAGCAAACCATAAATTC
AGTTTCCAGTGGTGATAGTTAATTGTCAATTTGACAATTTTGAATCACCTGGGCAGAGAGTCTC
AGAGGGACTGTCTGGATCGGGCTGACCCCTTGTGGGCATGTCTGTGTGGGATTAGCTTGATTGA
TTATGTTGAGGTAAGAAGACCCACCCACTGTGGGTGGCACCATTTCTTGGGCAGGCAGATCTGT
AACGGAGAAACAGCTGAACACTGGTAGGCATGTGTACGTTTGTTCAACTGTGATGTGTGTCACG
TTCCTGACCCTTGACTCCCCTATAGTCTGTAACTTGGAATTATGAGCCTTATAAACCCTTTGTC
CCTTAATCCCTTAAAGTACTTTGAGCAGGATATTCGTCACAGCAGTAACATATACATGGATTGG
AGGGGTGGCTCAGTGGTTAAGGGCACTTGCTGTTCTTCCAGAGGATTTAGGGGCAATTCTGAGC
ACCCAGTTCCAGGAGATCTGATGCCCTCTACTGGCCTATGTGAGCATGAAACATGCATGTGGTA
TGCAGATATACATGCAGGGAAAACACTCATACAAAAAAAAATCCTAAAAGAAAGACTTTTATAG
AGAACATGACATTCTGCAGTTTTAGAGAACCCCTCACTTCCTATCAAAGGAAGTCACATAGGAG
AGAAAAAGGTGGTGCTTCAGGGGCTATGAGTGTAGCTCAGCGGTAGAATAATTGTTTAAATGCT
TGAGTTAAATTTATGTCATACCTGGGTGTGATGGTGCCTTTAATCCTGGTAGACCTCTGACTGG
TCTACACAATAAATTCCAGGACAGTCAGGGCTACACAGAAATACCCTCTCAAAAAGCTAATGTT
GCTATTTTATATTGTATGTTAGTCTCTGTTGCTATAACAAAAAAACCAAACAAACCTATGGGGT
ATACAAGGCAAAACATTTATTTTTGGCTCATTTTTTAGGGGTCTCAGGTCATGCCTGCAGTCGT
CTTTGGGCCTATGGTGAGAAATCATGGTGCAGAGAGAATGTGGGGGAGGGGACTGCTCAGCTGT
GGGGGCCCAGGAGCAGGAAGACAGGGACAGATACTCTCTTTAAAAGCAAGACTGTCTCTGAAGA
TCATCATGCCAGAGTTCAAGAAAGGCCACCATTCCATGTCTGTGTTCAGGAGCCAAGGAAGAGA
GGATGAACTTTGCTGCTGTACCATGGAAGGGAGGAAGCTCTCTCCTTTTTGGTCACCTCCTTTC
TGTTCTGAACAGCATCTCCCCAATTGTCCAGCAGAGACTCTTATTCTTGACAAATTTAAAATCT
TGAATTGAGCCAGCTGGTGGGCAAGAGAGATCACAGTGGACAAAGAATCAGAGTTCTGGAAACA
ACTGGGCCAGATCCTGAGTCTCCAGTCTAAGTCCTTTCTGGATCCCACAGAACTCCACCACACT
CCTTCCCCCCCCCATAAAGCTTACCAACTGTTCACACAAATCCTTGTCTAGAGCAGCCTGTTGC
TTAGATTAACGCTTAGCACTAAGCTGAGATGAGAATTATCAACCATTGCTGTGTCTGGTCATAA
AAAATCTGCTTCGATGGGGAGGGCTGGGTAAAAATGGGAGGATTCTCTCAGGAAAAAAAGCATA
AATCTTAGGGAATAGGGAGAAGATCCATTTGGACATTAAGAAAAGTCTGGGGATGGCTTTATTC
TAAGGAAGATGGGGTATCTATATTAAAGCAAAGACCCACTGTAGATACTAAGTCAGAACCTTGC
GAGTGGAACCCTGCACGAAGGGTTTGGAGTGAACAGTAAAGTCTGACAACCACTCTTGGTAAAT
TATGAGGTCTAAGTGTGCAATAAATGTGACTTCTCCTTTGCCAAGAAGTGGGGTATTGTTATGG
AGAAAGAAACTGATCCTGAGTCCTGAATAGCATGCCCCCCTTCCCCTGCAACACATCCCCACCC
CTACCCAGCCCCCTAGTACTATATGGTTTCTGAGAATCAGAAGGCTGTCCTTGAACTCAGCATC
ATCCTCACTCAGTGCCAGGACTAGGGCACGTGCTTCCATGCCTGGCCGGTTATGCTGTGTGTTT
TACCATCTTTATGATCCTGATGAGGTTTAGAGATGAGGAATCTGCTGAGGAGAAGATCCAGTCA
ATGGGGTGGGGCTGGAGAAAGATGGTCAACAGACACAAAAAAAGCTTCTGTATGAAGTGCTGGG
GGTTGAGCCACCGAATTGTACCCTCAGCCCTGGGAAAACAATTTCTGATGTGTTGTATAACACA
GTGGGCTAACTGTGGGTGCCAGTAATTGGATACTTCAAAAAAGCTAGCAGGTTGTATATACCCA
ACAAAAAGAAGTGGTAAATCTGTAAGGAGATAAGATAATATACCATTATTCCAGTGTGGGGGTT
TCAATAAGAATGGCCCCCATAGGCTCATATATTTGAATGCTTAGGAAGTGGCACTGTTTAAGAA
AGATTAGGAGGTGTGACCTTGTTGGAAGAAGTGTGTCACTGTGGGTGGGCTTGGAAGTTTCAAA
AGGCTCATACCAGGTCCAGAGTGGCTGGCTCCCCCCACCCCCCACCTCTGGTTGTGGATCAGGA
TGTATCACTCAGCTACTTCTCCAACACCACACCTGCCTGCCTCCCCCTGCCCTTCCCCCATCCC
CACCCCCATGCTGTCTGCCATGGTGATAATGGCCTAGGCCTCTGAAACTGTAAGGAAGTCCCCA
ATTAAATGCTTTCTTTTATAAGTGTTGCCTTGGTCATGGTGTCTCTTCACAGCAATAGAGCAGT
GACTAATAAATTTGGTAATATCAGTATATGTACAAGTGCGTTAGAATACTGGGCTGGTGAGCTG
TGTATGCTTGGTAGCCTGAATATCTGATCCGATCCTTGGAACCACAATGGAGAAAAGTGACTCC
TAAAAACTATCCTCTGACCTCCACATGAGCTTCCCAGCACAGGAACATGCTTACACTCCCATAA
TAAAATTAAAAATTTGAATATGGCAAATATTATGTATTCACTAAATTTGGGCTTTGTGGAACTC
TAAAGTCCAGTAGTGGATAAGGTTCTGAAATGACCAGTTAGCAGAGTGGGTAAAAACTAGGGAC
TTCGGATTTGCTATGCCTGACCTTTGGCATAGTGTTTAATCTTCCTATTTCTCAGGTTCTTTTC
TCCAAAAGAAGGTTCTAAAACTTACACCATAGGCAAATCTCTAGAAACTTGAGGCCAGCCTGGT
CTACTTAATCAAGTTTCAGGCCAGCCAAAGCTACATAATGACACACTGTCTCAACAAAGTAAAG
CAGAAACCCTGCCTCCTGGAGATATAAGGTTAACTGAGAACGTCAGTTTATAGTAGTTCAGTAA
ATACTCACGTTAGACAGGCCTGATGACATATGTCTATGATCACTGCACCCAAGAGATGGTAGCA
GGACTGGGCAGTCAAGTCAGACTCAGCAACAGTCTGAGTGAGTGAGACCCTAACACATACATGC
ATGTGTAAATACATGAGCACACACACACTGTAATCCTTGGGTATTGTCTGTCATGAGGTATTGG
AGATTAACTTGAAGAGAGGGTCTATCTGGAAAATGGGAAGGTTGGTCCTGAGGAATGGCCATCC
ATGGAACAGGGATGAAGGGAAGTTGGGAAAGATTGGATCCCAAACCTCCATGAACCTTAGTCTC
GGGGGTGGGCTGTTGACATGCCCTGCAGGGTTCGATAATTTCCCAGGCTGCAGAGAGGTTTAGG
CTAGGGTGGGGGGCTGGCGTTTGATTATTGGCATCTTCTGCACCACAGTAGAAGCCTCAGTACT
GGAAGCAGTACCAGCAATCTAAGTGTACCTCCTGTCTGTATGACAGGTGGGAAGTGAAAAGCTC
AAGTCAAGTGTCTTGGCTGGCTAACTTACTGACCCCTAAAAGAGATAGAGGATAGATCAGGCAG
GGGTCAAGAGTAATTGAGAAAGGGCTAAAGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTTTTGAGATGGGGCGGTGTAAGCAGTCTCTGAGGCCTCAGCCCACGCTTGTACATGTCTAT
GAAAAGATGTCCAAGACAGAATCTGAAGAGCCTTATGTATGTATCTCCTGCAGCCTCCTGGATC
AGCCTACACTGGCTTGGAGACCTGTATCTGGCTGGTAAAAAAAAAGTAAAGACTTTTATGGCCA
AAGCAGGCTGTGACTGGGTCCAGGTTAACCTTGGAGCTGCCTGCAGGCTTTGCCATTACTACTG
TCCCCCATCTCTTCATAACTAGTGCCTTCTTGAGCCCTTGGAGAGGGGAGATGTGAAGAGGTGT
GAGAGGCTGTCTCAAAGTCCCAAGAATTATACCCTCAGAATTATACATAGAAGTCCTTTGTACT
TTAGGGCTGGGTGGGGCTGCGTTTCGAAGCTGAACTGGAGGAGATAAGCAATGAATGGTTTGTG
TTTGCAAATAGACTGACAGCTTCCCAACCCCCTGGGCACCTACTGCTCAAGGAGCAGCCTCTCT
GAGTAACTTCAAGTCTCCCTCCCTTAGCGATCTCTGGGTTGACCTTTTGCTGCTAGCCTAGGTC
CACAAAAGCGCCCCTTCGGGCCCCCACGCTGCAGACGTTGCTCTCGCCACCTCCATCCTTGCCA
CTCGCGGAGTGAGGGACTGTACGGGCCCTTTAAGAGCAGCAGGACCAGGGAGCAGAAGCTTGAA
GAGAACGAACACTGCTGCCCGACTAGCTCTAGAGGACAGGCGCTGGGGACCAGACTACGAAAAC
CCAGCGGGTTCATCCAAGCAGGGTCGCAGCGAGATCTCAACCATCCATCCCTCCACAACCGTGT
CATCCTTTCTGACCGGAGCCCTGCCTTCCTCTACTGCCCGCCCTGGCCTAGCCCCGCCCCGGCC
CGGGCTACCGGGACAGGGAGCCGGGGCGCCGGTGCCGCAGCCAGAGGCAGGTGAAGAGAGCCGG
GAGTGTCCTCCTGCGCCGCAACGCTGAGCATCTGGGTCGAACATCCTGGTTGAGCATCTCTGCT
GAGCATCCTTGCGTCGCGGCGGCCGGAGACGCGTCAAGGCCAGCTGCGTGATGGCGGAGAAGGC
ACTGGAGGCTGTGGGCTGTGGACTGGGCCCTGGGGCTGTGGCCATGGCCGTGGCGCTGGAGGAC
GGGGCAGAGCCCCCTGTGCTGACCACGCACCTAAAGAAGGTGGAGAACCATATCACAGAAGCAC
AGCGGTTCTCTCACCTGCCCAAGCGCTCTGCTGTGGACATCGAGTTCGTGGAACTATCCTATTC
CGTGCGGGAGGGGCCCTGCTGGCGCAAACGGGGTTATAAGACCCTCCTCAAGTGCCTGTCTGGT
AAGTTCTGCCGCCGAGAGCTGATTGGCATTATGGGCCCCTCTGGGGCTGGCAAATCCACGTTCA
TGAACATCTTGGCAGGGTACAGGGAGTCGGGGATGAAGGGGCAGATCCTGGTTAACGGGAGGCC
ACGCGATCTGAGGACCTTTCGCAAGATGTCCTGCTACATCATGCAGGATGACATGCTTCTGCCT
CACCTCACGGTGCTAGAGGCCATGATGGTCTCTGCCAACCTGAAGCTGAGTGAGAAGCAAGAGG
TGAAGAAGGAACTGGTGACAGAGATCCTGACAGCCCTGGGACTGATGTCCTGCTCTCACACAAG
GACAGCCCTGCTCTCTGGAGGGCAGAGGAAGCGCCTGGCCATTGCTCTGGAGCTGGTCAACAAC
CCGCCTGTCATGTTCTTTGATGAGCCTACCAGCGGTCTAGACAGCGCTTCTTGTTTCCAAGTGG
TGTCCCTCATGAAGTCCCTGGCCCATGGGGGCCGCACCGTCATCTGCACCATCCACCAGCCCAG
TGCCAAGCTCTTTGAGATGTTTGACAAGCTCTACATCCTGAGCCAGGGACAGTGCATCTTCAAG
GGCGTGGTTACCAACCTGATTCCCTATTTGAAGGGGCTTGGCTTGCACTGCCCCACCTACCACA
ACCCCGCTGACTTCATCATTGAGGTGGCCTCTGGAGAGTATGGAGACCTGAACCCCATGCTGTT
CAGGGCTGTGCAGAATGGCCTTTGCACCATGGCCGAGAAGAAGAGCAGCCCCGAGAAGAATGAG
GTCCCTGCCCACTGTCCCACTTGCCCTCCGGAACTGGATCCCATTGAAAGCCACACGTTTGCCA
CCAGCACCCTCACCCAGTTCTGCATCCTCTTCAGGAGGACTTTCTTGTCCATCCTCAGGGACAC
GGTCCTGACCCACTTGCGGTTCATGTCACATGTGTTGATCGGCGTCCTCATTGGTCTCCTCTAC
CTGCACATCGGCGATGATGCCAGCAAGGTCTTCAACAACACCGGCTTCCTCTTCTTTTCCATGC
TCTTCCTCATGTTTGCAGCCCTCATGCCGACTGTGCTCACCTTTCCCCTAGAGATGGCAGTCTT
CATGAGGGAGCACCTGAACTACTGGTACAGTCTCAAAGCATATTACCTGGCCAAGACGATGGCT
GATGTACCCTTCCAGGTTGTGTGCCCAGTGGTGTACTGCAGCATTGTGTACTGGATGACTGGCC
AGCCGGCTGAGACCAGCCGCTTCCTGCTCTTCTCAGCCTTGTCCATAGCTACCGCCTTAGTTGC
CCAGTCTTTGGGACTCTTGATTGGCGCTGCTTCTACCTCCTTGCAGGTGGCCACCTTTGTGGGC
CCAGTCACTGCCATCCCTGTCCTCTTGTTCTCTGGCTTCTTTGTCAGTTTCAAGACCATCCCCA
CTTACCTGCAATGGAGCTCCTACCTTTCCTATGTCAGGTATGGCTTTGAGGGTCTGATCCTGAC
CATCTATGGCATGGAGAGAGGACATCTGACCTGCTTAGAGGATCACTGCCCATTCCGGGACCCA
CAGATCATCTTGCATGAGCTGGATGTGGAGGAGGCCAAGCTCTACATGGACTTCCTGGTCCTGG
GCATTTTCTTCCTTGCCCTGCGGCTGCTTGCATACCTTGTGCTTCGGTACCGGGTCAAGTCTGA
GAGATAGAGCCTGGCTCCTACCTCTTCTGGGCAGGACGCCCCCAGTTCCAGCCCTTTGGGACTG
TTTTAAACTTGTAGACTTGGGTGTCGGTTGCTGGTGCGGCTGCCCTCCTCTCCCTCAGCTGCTT
CACAGGCCGGCTGGCTGGCTGTGGGCCGTGGCTCCCAGCCTCAGCACCAGAGGTAGGGCTCCAG
CCCTCCCATCAAGGCCAGGAGTCTTCCCAAGTTGAAGCAGTTTGTAGCTTCCTCCCTACTGTCT
CCAACACCTGCATGCAAAGACTGCTGGGAGGCTGCCGCCCTCCTCTGCCGAAAGCACCCTCCTC
TGTTGATTACTTGGGAGCTCCATGTTCTCTAAGCCTTGACTTACAAGCAAGCAATCAGATTGAC
CCCCTCTGGGGTCCCCGCCACACAAGTGTTGGTAAACTGTTATCATGTTGGAGTCCCAGGGCTG
GGCCCTGATGGGGTCCCCAGGGAGTCCCATCACGGACATTGGATGGAGTAAGGAGGGACTCTGG
AAGCTTCCTCCTCCTCCCCTTTTCTCCCCACACCCACTTTGGCTAATTTGGACCATCTGTTGAG
ACAGAAGCCGGGCTTTCTGTCTGGCCCACCACTCCCAATCCTGGAGATTGGAGAGAGCATGGGA
TGTCCCAGCCCCTTCCCTAAGCCTTTGGTCAAGGTAGATCTCAATGTCACCTCTGCAATAATGT
CTGTGTCACTCTCCCATCTGCCACAGGAACTAGAGAATGTACTTTATTCTGGGGAGGAAGGTGA
GCCGGGGAAGCCCCCACCCTCCTTCTTTGCTGCTCCTGAGGCTCAGTTCCACAGGCTCCTTTCC
TCTCCAGAGTCACATCACAGGCACACAAAGGCCACCAGGCGATCTCAGCCCTACACAGGCACCA
CCCCTTATGGCTCAGAGGAAGAGTGACCATGGCAGGGAGCTGATGGTGGTGGCAGGAGGGCAGT
CCCAATGTCCTCCTGCAGAATCCCACTTTGGAGGCTAAGAACGAGGCTGGTGTGACCCAGTGTG
GCTCCAGGCTCAGCAGGTGTCTATCTCCCAGTCTTCCCTCCCTCTTGAGCCAGGGGTGGCACTG
GCCTCCTGGAGGTCAGAACCCAACAAGCACAAGAATGGGCATAGCTGGCTTCAGCCACTGCTCC
CCATGGCCCTCCTTTTGTGCCCCATGCTGACACTCGCTCTCCTGCCCCTTCTCCAGCTGCCTGC
TGCTCACTCAAACTTCTGTTCACATATATTCATCTTCCAGTCAGCAGCTGGGTCCTGGACATCA
GAGCAGCGGGGCCTGGATGCCAGGAGGCAGACACAGCTGTGTCTTCTCTTGGTGGGTCCGGGAT
CATCCTATAGCTGGTTTCTCCTCCTCCAGGACTCTTCCCCAGTCCCTGTGCTCACTCCTCTGTA
TCTGCTCCAGGTTATTCTCATCACAGAGAGACCAGTTGTATTTGTGGGATTTCACCCATTATTA
ATAAAACCTATATTTATACAGTA

hide sequence

RefSeq Acc Id:

XM_006242916 ⟹ XP_006242978

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,612,675 - 44,626,389 (-)	NCBI
Rnor_6.0	8	48,604,915 - 48,620,147 (-)	NCBI
Rnor_5.0	8	47,222,818 - 47,239,879 (-)	NCBI

Sequence:

show sequence

GACAAGAGGGTCGGCCTAGAGGGTCTGGGGTCTGCCGCTGTCTTTGGGGGGACAGTCCGGAGGC
GCATGGCCATCTAAGCAGGATGGGGAGGCCGGCGGAGGAGCGGTGCCAGTCCGTGCAGAGAGGG
GCTCGGAGCCGTGGTCAGAGCCTCCTCTGGCCCACCCTGCGCCTCCTAGTTTCCCCGACCTCCG
AGCGGGTGGCTACCCTCGCCCGGGCCCCCAGGGACCGCCGGCCTGAGGGGTAAGGAGATTAAGG
CCGCGGCGGGGAGGGAGGAGCGGGCGCGGCTTCGACCAGCCGGGCGAGCAAGGCCAGGCTGGGA
CTGCCTAGGAACGAGGAGAGGTTGCAACTGAGTGTCACTGCACCGGGAGTGTGCTGCCCGGTGC
AGAAGACCCGGCGGGAAAAGGGGCCAGCTGCGTGATGGCGGAGAAGGCACTGGAGGCTGTGGGC
TGTGGACTGGGCCCTGGGGCTGTGGCCATGGCCGTGGCGCTGGAGGACGGGGCAGAGCCCCCTG
TGCTGACCACGCACCTAAAGAAGGTGGAGAACCATATCACAGAAGCACAGCGGTTCTCTCACCT
GCCCAAGCGCTCTGCTGTGGACATCGAGTTCGTGGAACTATCCTATTCCGTGCGGGAGGGGCCC
TGCTGGCGCAAACGGGGTTATAAGACCCTCCTCAAGTGCCTGTCTGGTAAGTTCTGCCGCCGAG
AGCTGATTGGCATTATGGGCCCCTCTGGGGCTGGCAAATCCACGTTCATGAACATCTTGGCAGG
GTACAGGGAGTCGGGGATGAAGGGGCAGATCCTGGTTAACGGGAGGCCACGCGATCTGAGGACC
TTTCGCAAGATGTCCTGCTACATCATGCAGGATGACATGCTTCTGCCTCACCTCACGGTGCTAG
AGGCCATGATGGTCTCTGCCAACCTGAAGCTGAGTGAGAAGCAAGAGGTGAAGAAGGAACTGGT
GACAGAGATCCTGACAGCCCTGGGACTGATGTCCTGCTCTCACACAAGGACAGCCCTGCTCTCT
GGAGGGCAGAGGAAGCGCCTGGCCATTGCTCTGGAGCTGGTCAACAACCCGCCTGTCATGTTCT
TTGATGAGCCTACCAGCGGTCTAGACAGCGCTTCTTGTTTCCAAGTGGTGTCCCTCATGAAGTC
CCTGGCCCATGGGGGCCGCACCGTCATCTGCACCATCCACCAGCCCAGTGCCAAGCTCTTTGAG
ATGTTTGACAAGCTCTACATCCTGAGCCAGGGACAGTGCATCTTCAAGGGCGTGGTTACCAACC
TGATTCCCTATTTGAAGGGGCTTGGCTTGCACTGCCCCACCTACCACAACCCCGCTGACTTCAT
CATTGAGGTGGCCTCTGGAGAGTATGGAGACCTGAACCCCATGCTGTTCAGGGCTGTGCAGAAT
GGCCTTTGCACCATGGCCGAGAAGAAGAGCAGCCCCGAGAAGAATGAGGTCCCTGCCCACTGTC
CCACTTGCCCTCCGGAACTGGATCCCATTGAAAGCCACACGTTTGCCACCAGCACCCTCACCCA
GTTCTGCATCCTCTTCAGGAGGACTTTCTTGTCCATCCTCAGGGACACGGTCCTGACCCACTTG
CGGTTCATGTCACATGTGTTGATCGGCGTCCTCATTGGTCTCCTCTACCTGCACATCGGCGATG
ATGCCAGCAAGGTCTTCAACAACACCGGCTTCCTCTTCTTTTCCATGCTCTTCCTCATGTTTGC
AGCCCTCATGCCGACTGTGCTCACCTTTCCCCTAGAGATGGCAGTCTTCATGAGGGAGCACCTG
AACTACTGGTACAGTCTCAAAGCATATTACCTGGCCAAGACGATGGCTGATGTACCCTTCCAGG
TTGTGTGCCCAGTGGTGTACTGCAGCATTGTGTACTGGATGACTGGCCAGCCGGCTGAGACCAG
CCGCTTCCTGCTCTTCTCAGCCTTGTCCATAGCTACCGCCTTAGTTGCCCAGTCTTTGGGACTC
TTGATTGGCGCTGCTTCTACCTCCTTGCAGGTGGCCACCTTTGTGGGCCCAGTCACTGCCATCC
CTGTCCTCTTGTTCTCTGGCTTCTTTGTCAGTTTCAAGACCATCCCCACTTACCTGCAATGGAG
CTCCTACCTTTCCTATGTCAGGTATGGCTTTGAGGGTCTGATCCTGACCATCTATGGCATGGAG
AGAGGACATCTGACCTGCTTAGAGGATCACTGCCCATTCCGGGACCCACAGATCATCTTGCATG
AGCTGGATGTGGAGGAGGCCAAGCTCTACATGGACTTCCTGGTCCTGGGCATTTTCTTCCTTGC
CCTGCGGCTGCTTGCATACCTTGTGCTTCGGTACCGGGTCAAGTCTGAGAGATAGAGCCTGGCT
CCTACCTCTTCTGGGCAGGACGCCCCCAGTTCCAGCCCTTTGGGACTGTTTTAAACTTGTAGAC
TTGGGTGTCGGTTGCTGGTGCGGCTGCCCTCCTCTCCCTCAGCTGCTTCACAGGCCGGCTGGCT
GGCTGTGGGCCGTGGCTCCCAGCCTCAGCACCAGAGGTAGGGCTCCAGCCCTCCCATCAAGGCC
AGGAGTCTTCCCAAGTTGAAGCAGTTTGTAGCTTCCTCCCTACTGTCTCCAACACCTGCATGCA
AAGACTGCTGGGAGGCTGCCGCCCTCCTCTGCCGAAAGCACCCTCCTCTGTTGATTACTTGGGA
GCTCCATGTTCTCTAAGCCTTGACTTACAAGCAAGCAATCAGATTGACCCCCTCTGGGGTCCCC
GCCACACAAGTGTTGGTAAACTGTTATCATGTTGGAGTCCCAGGGCTGGGCCCTGATGGGGTCC
CCAGGGAGTCCCATCACGGACATTGGATGGAGTAAGGAGGGACTCTGGAAGCTTCCTCCTCCTC
CCCTTTTCTCCCCACACCCACTTTGGCTAATTTGGACCATCTGTTGAGACAGAAGCCGGGCTTT
CTGTCTGGCCCACCACTCCCAATCCTGGAGATTGGAGAGAGCATGGGATGTCCCAGCCCCTTCC
CTAAGCCTTTGGTCAAGGTAGATCTCAATGTCACCTCTGCAATAATGTCTGTGTCACTCTCCCA
TCTGCCACAGGAACTAGAGAATGTACTTTATTCTGGGGAGGAAGGTGAGCCGGGGAAGCCCCCA
CCCTCCTTCTTTGCTGCTCCTGAGGCTCAGTTCCACAGGCTCCTTTCCTCTCCAGAGTCACATC
ACAGGCACACAAAGGCCACCAGGCGATCTCAGCCCTACACAGGCACCACCCCTTATGGCTCAGA
GGAAGAGTGACCATGGCAGGGAGCTGATGGTGGTGGCAGGAGGGCAGTCCCAATGTCCTCCTGC
AGAATCCCACTTTGGAGGCTAAGAACGAGGCTGGTGTGACCCAGTGTGGCTCCAGGCTCAGCAG
GTGTCTATCTCCCAGTCTTCCCTCCCTCTTGAGCCAGGGGTGGCACTGGCCTCCTGGAGGTCAG
AACCCAACAAGCACAAGAATGGGCATAGCTGGCTTCAGCCACTGCTCCCCATGGCCCTCCTTTT
GTGCCCCATGCTGACACTCGCTCTCCTGCCCCTTCTCCAGCTGCCTGCTGCTCACTCAAACTTC
TGTTCACATATATTCATCTTCCAGTCAGCAGCTGGGTCCTGGACATCAGAGCAGCGGGGCCTGG
ATGCCAGGAGGCAGACACAGCTGTGTCTTCTCTTGGTGGGTCCGGGATCATCCTATAGCTGGTT
TCTCCTCCTCCAGGACTCTTCCCCAGTCCCTGTGCTCACTCCTCTGTATCTGCTCCAGGTTATT
CTCATCACAGAGAGACCAGTTGTATTTGTGGGATTTCACCCATTATTAATAAAACCTATATTTA
TACAGTA

hide sequence

RefSeq Acc Id:

XM_017595549 ⟹ XP_017451038

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,612,675 - 44,629,818 (-)	NCBI
Rnor_6.0	8	48,604,915 - 48,626,219 (-)	NCBI

Sequence:

show sequence

CCAGCCCTCCAGCAGATCTCTTGAGTGGTAGGTCAGGCTGGTCTAAGTTCCAGGCAGCCAGGGC
TATGCAGAGAAAGACTGTCTCAGATAATACAGGTAAAATTAGTAAAAAAAAAAAAAAAAAAAAA
AAAAAGATTTTGCTCTTGTTTCTGCTCTGTTTGCTCTTCCTCCTCCCTCCTCATTTCCCTCTCC
CATCTCTCACCATGCTCTCATGGCCAGCCTCAACTCCTCTATTCTCTCCCTGACTTTCTTTATC
TTTACTCTCTCAACTCCCCTCCCCATGCCCTGAATAAACTCTAGTCTAGACTTAAAAAAAACAA
TCTATCAATTCCTATTGAGTCTTTGCTATAGCTTAGGCAGATTACTAAAAACACAAAGATACGA
ACTTGGGACTTTGCTGCTGGAGGGCCTTGCAAACAGGACAAGAGTGACAGAGAGCCAGAGTCAG
AAGAGAGGCTTGGGTGGAGCTCAGGAAGATCCTGCTTATCATGGAAGATGACGGTGGAGATGGT
TAGTTAGACATAGTTACATGTAGAAGTTAGGAAAGACGATCCAGGAAGAGGCTTCCTCATAACC
AATAACAGAAGGCACCTTAGAAGGATTGCAGCGCAGCGCCTAATTTTCTCATGTGCATACGTAA
CAAAAATTGAAAATACTGAACCCTAACTTTGAAGGGTTTGGTGCGATGGGGATACAGGGACCCA
GGAGTTAGGAACTATGGAGACTGCTTCTGTGGGACAAGTCCACACCCTCAGAAGAGTGCCTGAA
TATTAAATGAATGAGTAAACTGCTCAGGACTGTAATAAATGGAAAAGCATGATCCTTCCGTGTG
TTGTAGCAGGAAGAGGTGAAAAAAAATCATCCCCAGACCATGTTGGGAATTGAACTCTGGTCCT
TTAGAGGCAAAAAAGATGAGCCAGAGGGTGTTACAAGACTTCAAGTTCTACTGAGGGAAGGAAG
CTAAAGAAACAGTCTTTGGTTAAGATCATGACCTTATAGTATTTACCTAGCAAACCATAAATTC
AGTTTCCAGTGGTGATAGTTAATTGTCAATTTGACAATTTTGAATCACCTGGGCAGAGAGTCTC
AGAGGGACTGTCTGGATCGGGCTGACCCCTTGTGGGCATGTCTGTGTGGGATTAGCTTGATTGA
TTATGTTGAGGTAAGAAGACCCACCCACTGTGGGTGGCACCATTTCTTGGGCAGGCAGATCTGT
AACGGAGAAACAGCTGAACACTGGTAGGCATGTGTACGTTTGTTCAACTGTGATGTGTGTCACG
TTCCTGACCCTTGACTCCCCTATAGTCTGTAACTTGGAATTATGAGCCTTATAAACCCTTTGTC
CCTTAATCCCTTAAAGTACTTTGAGCAGGATATTCGTCACAGCAGTAACATATACATGGATTGG
AGGGGTGGCTCAGTGGTTAAGGGCACTTGCTGTTCTTCCAGAGGATTTAGGGGCAATTCTGAGC
ACCCAGTTCCAGGAGATCTGATGCCCTCTACTGGCCTATGTGAGCATGAAACATGCATGTGGTA
TGCAGATATACATGCAGGGAAAACACTCATACAAAAAAAAATCCTAAAAGAAAGACTTTTATAG
AGAACATGACATTCTGCAGTTTTAGAGAACCCCTCACTTCCTATCAAAGGAAGTCACATAGGAG
AGAAAAAGGTGGTGCTTCAGGGGCTATGAGTGTAGCTCAGCGGTAGAATAATTGTTTAAATGCT
TGAGTTAAATTTATGTCATACCTGGGTGTGATGGTGCCTTTAATCCTGGTAGACCTCTGACTGG
TCTACACAATAAATTCCAGGACAGTCAGGGCTACACAGAAATACCCTCTCAAAAAGCTAATGTT
GCTATTTTATATTGTATGTTAGTCTCTGTTGCTATAACAAAAAAACCAAACAAACCTATGGGGT
ATACAAGGCAAAACATTTATTTTTGGCTCATTTTTTAGGGGTCTCAGGTCATGCCTGCAGTCGT
CTTTGGGCCTATGGTGAGAAATCATGGTGCAGAGAGAATGTGGGGGAGGGGACTGCTCAGCTGT
GGGGGCCCAGGAGCAGGAAGACAGGGACAGATACTCTCTTTAAAAGCAAGACTGTCTCTGAAGA
TCATCATGCCAGAGTTCAAGAAAGGCCACCATTCCATGTCTGTGTTCAGGAGCCAAGGAAGAGA
GGATGAACTTTGCTGCTGTACCATGGAAGGGAGGAAGCTCTCTCCTTTTTGGTCACCTCCTTTC
TGTTCTGAACAGCATCTCCCCAATTGTCCAGCAGAGACTCTTATTCTTGACAAATTTAAAATCT
TGAATTGAGCCAGCTGGTGGGCAAGAGAGATCACAGTGGACAAAGAATCAGAGTTCTGGAAACA
ACTGGGCCAGATCCTGAGTCTCCAGTCTAAGTCCTTTCTGGATCCCACAGAACTCCACCACACT
CCTTCCCCCCCCCATAAAGCTTACCAACTGTTCACACAAATCCTTGTCTAGAGCAGCCTGTTGC
TTAGATTAACGCTTAGCACTAAGCTGAGATGAGAATTATCAACCATTGCTGTGTCTGGTCATAA
AAAATCTGCTTCGATGGGGAGGGCTGGGTAAAAATGGGAGGATTCTCTCAGGAAAAAAAGCATA
AATCTTAGGGAATAGGGAGAAGATCCATTTGGACATTAAGAAAAGTCTGGGGATGGCTTTATTC
TAAGGAAGATGGGGTATCTATATTAAAGCAAAGACCCACTGTAGATACTAAGTCAGAACCTTGC
GAGTGGAACCCTGCACGAAGGGTTTGGAGTGAACAGTAAAGTCTGACAACCACTCTTGGTAAAT
TATGAGGTCTAAGTGTGCAATAAATGTGACTTCTCCTTTGCCAAGAAGTGGGGTATTGTTATGG
AGAAAGAAACTGATCCTGAGTCCTGAATAGCATGCCCCCCTTCCCCTGCAACACATCCCCACCC
CTACCCAGCCCCCTAGTACTATATGGTTTCTGAGAATCAGAAGGCTGTCCTTGAACTCAGCATC
ATCCTCACTCAGTGCCAGGACTAGGGCACGTGCTTCCATGCCTGGCCGGTTATGCTGTGTGTTT
TACCATCTTTATGATCCTGATGAGGTTTAGAGATGAGGAATCTGCTGAGGAGAAGATCCAGTCA
ATGGGGTGGGGCTGGAGAAAGATGGTCAACAGACACAAAAAAAGCTTCTGTATGAAGTGCTGGG
GGTTGAGCCACCGAATTGTACCCTCAGCCCTGGGAAAACAATTTCTGATGTGTTGTATAACACA
GTGGGCTAACTGTGGGTGCCAGTAATTGGATACTTCAAAAAAGCTAGCAGGTTGTATATACCCA
ACAAAAAGAAGTGGTAAATCTGTAAGGAGATAAGATAATATACCATTATTCCAGTGTGGGGGTT
TCAATAAGAATGGCCCCCATAGGCTCATATATTTGAATGCTTAGGAAGTGGCACTGTTTAAGAA
AGATTAGGAGGTGTGACCTTGTTGGAAGAAGTGTGTCACTGTGGGTGGGCTTGGAAGTTTCAAA
AGGCTCATACCAGGTCCAGAGTGGCTGGCTCCCCCCACCCCCCACCTCTGGTTGTGGATCAGGA
TGTATCACTCAGCTACTTCTCCAACACCACACCTGCCTGCCTCCCCCTGCCCTTCCCCCATCCC
CACCCCCATGCTGTCTGCCATGGTGATAATGGCCTAGGCCTCTGAAACTGTAAGGAAGTCCCCA
ATTAAATGCTTTCTTTTATAAGTGTTGCCTTGGTCATGGTGTCTCTTCACAGCAATAGAGCAGT
GACTAATAAATTTGGTAATATCAGTATATGTACAAGTGCGTTAGAATACTGGGCTGGTGAGCTG
TGTATGCTTGGTAGCCTGAATATCTGATCCGATCCTTGGAACCACAATGGAGAAAAGTGACTCC
TAAAAACTATCCTCTGACCTCCACATGAGCTTCCCAGCACAGGAACATGCTTACACTCCCATAA
TAAAATTAAAAATTTGAATATGGCAAATATTATGTATTCACTAAATTTGGGCTTTGTGGAACTC
TAAAGTCCAGTAGTGGATAAGGTTCTGAAATGACCAGTTAGCAGAGTGGGTAAAAACTAGGGAC
TTCGGATTTGCTATGCCTGACCTTTGGCATAGTGTTTAATCTTCCTATTTCTCAGGTTCTTTTC
TCCAAAAGAAGGTTCTAAAACTTACACCATAGGCAAATCTCTAGAAACTTGAGGCCAGCCTGGT
CTACTTAATCAAGTTTCAGGCCAGCCAAAGCTACATAATGACACACTGTCTCAACAAAGTAAAG
CAGAAACCCTGCCTCCTGGAGATATAAGGTTAACTGAGAACGTCAGTTTATAGTAGTTCAGTAA
ATACTCACGTTAGACAGGCCTGATGACATATGTCTATGATCACTGCACCCAAGAGATGGTAGCA
GGACTGGGCAGTCAAGTCAGACTCAGCAACAGTCTGAGTGAGTGAGACCCTAACACATACATGC
ATGTGTAAATACATGAGCACACACACACTGTAATCCTTGGGTATTGTCTGTCATGAGGTATTGG
AGATTAACTTGAAGAGAGGGTCTATCTGGAAAATGGGAAGGTTGGTCCTGAGGAATGGCCATCC
ATGGAACAGGGATGAAGGGAAGTTGGGAAAGATTGGATCCCAAACCTCCATGAACCTTAGTCTC
GGGGGTGGGCTGTTGACATGCCCTGCAGGGTTCGATAATTTCCCAGGCTGCAGAGAGGTTTAGG
CTAGGGTGGGGGGCTGGCGTTTGATTATTGGCATCTTCTGCACCACAGTAGAAGCCTCAGTACT
GGAAGCAGTACCAGCAATCTAAGTGTACCTCCTGTCTGTATGACAGGTGGGAAGTGAAAAGCTC
AAGTCAAGTGTCTTGGCTGGCTAACTTACTGACCCCTAAAAGAGATAGAGGATAGATCAGGCAG
GGGTCAAGAGTAATTGAGAAAGGGCTAAAGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTTTTGAGATGGGGCGGTGTAAGCAGTCTCTGAGGCCTCAGCCCACGCTTGTACATGTCTAT
GAAAAGATGTCCAAGACAGAATCTGAAGAGCCTTATGTATGTATCTCCTGCAGCCTCCTGGATC
AGCCTACACTGGCTTGGAGACCTGTATCTGGCTGGTAAAAAAAAAGTAAAGACTTTTATGGCCA
AAGCAGGCTGTGACTGGGTCCAGGTTAACCTTGGAGCTGCCTGCAGGCTTTGCCATTACTACTG
TCCCCCATCTCTTCATAACTAGTGCCTTCTTGAGCCCTTGGAGAGGGGAGATGTGAAGAGGTGT
GAGAGGCTGTCTCAAAGTCCCAAGAATTATACCCTCAGAATTATACATAGAAGTCCTTTGTACT
TTAGGGCTGGGTGGGGCTGCGTTTCGAAGCTGAACTGGAGGAGATAAGCAATGAATGGTTTGTG
TTTGCAAATAGACTGACAGCTTCCCAACCCCCTGGGCACCTACTGCTCAAGGAGCAGCCTCTCT
GAGTAACTTCAAGTCTCCCTCCCTTAGCGATCTCTGGGTTGACCTTTTGCTGCTAGCCTAGGTC
CACAAAAGCGCCCCTTCGGGCCCCCACGCTGCAGACGTTGCTCTCGCCACCTCCATCCTTGCCA
CTCGCGGAGTGAGGGACTGTACGGGCCCTTTAAGAGCAGCAGGACCAGGGAGCAGAAGCTTGAA
GAGAACGAACACTGCTGCCCGACTAGCTCTAGAGGACAGGCGCTGGGGACCAGACTACGAAAAC
CCAGCGGGTTCATCCAAGCAGGGTCGCAGCGAGATCTCAACCATCCATCCCTCCACAACCGTGT
CATCCTTTCTGACCGGAGCCCTGCCTTCCTCTACTGCCCGCCCTGGCCTAGCCCCGCCCCGGCC
CGGGCTACCGGGACAGGGAGCCGGGGCGCCGGTGCCGCAGCCAGAGGCAGGTGAAGAGAGCCGG
GAGTGTCCTCCTGCGCCGCAACGCTGAGCATCTGGGTCGAACATCCTGGTTGAGCATCTCTGCT
GAGCATCCTTGCGTCGCGGCGGCCGGAGACGCGTCAAGGTGACCAGGCCAGCTGCGTGATGGCG
GAGAAGGCACTGGAGGCTGTGGGCTGTGGACTGGGCCCTGGGGCTGTGGCCATGGCCGTGGCGC
TGGAGGACGGGGCAGAGCCCCCTGTGCTGACCACGCACCTAAAGAAGGTGGAGAACCATATCAC
AGAAGCACAGCGGTTCTCTCACCTGCCCAAGCGCTCTGCTGTGGACATCGAGTTCGTGGAACTA
TCCTATTCCGTGCGGGAGGGGCCCTGCTGGCGCAAACGGGGTTATAAGACCCTCCTCAAGTGCC
TGTCTGGTAAGTTCTGCCGCCGAGAGCTGATTGGCATTATGGGCCCCTCTGGGGCTGGCAAATC
CACGTTCATGAACATCTTGGCAGGGTACAGGGAGTCGGGGATGAAGGGGCAGATCCTGGTTAAC
GGGAGGCCACGCGATCTGAGGACCTTTCGCAAGATGTCCTGCTACATCATGCAGGATGACATGC
TTCTGCCTCACCTCACGGTGCTAGAGGCCATGATGGTCTCTGCCAACCTGAAGCTGAGTGAGAA
GCAAGAGGTGAAGAAGGAACTGGTGACAGAGATCCTGACAGCCCTGGGACTGATGTCCTGCTCT
CACACAAGGACAGCCCTGCTCTCTGGAGGGCAGAGGAAGCGCCTGGCCATTGCTCTGGAGCTGG
TCAACAACCCGCCTGTCATGTTCTTTGATGAGCCTACCAGCGGTCTAGACAGCGCTTCTTGTTT
CCAAGTGGTGTCCCTCATGAAGTCCCTGGCCCATGGGGGCCGCACCGTCATCTGCACCATCCAC
CAGCCCAGTGCCAAGCTCTTTGAGATGTTTGACAAGCTCTACATCCTGAGCCAGGGACAGTGCA
TCTTCAAGGGCGTGGTTACCAACCTGATTCCCTATTTGAAGGGGCTTGGCTTGCACTGCCCCAC
CTACCACAACCCCGCTGACTTCATCATTGAGGTGGCCTCTGGAGAGTATGGAGACCTGAACCCC
ATGCTGTTCAGGGCTGTGCAGAATGGCCTTTGCACCATGGCCGAGAAGAAGAGCAGCCCCGAGA
AGAATGAGGTCCCTGCCCACTGTCCCACTTGCCCTCCGGAACTGGATCCCATTGAAAGCCACAC
GTTTGCCACCAGCACCCTCACCCAGTTCTGCATCCTCTTCAGGAGGACTTTCTTGTCCATCCTC
AGGGACACGGTCCTGACCCACTTGCGGTTCATGTCACATGTGTTGATCGGCGTCCTCATTGGTC
TCCTCTACCTGCACATCGGCGATGATGCCAGCAAGGTCTTCAACAACACCGGCTTCCTCTTCTT
TTCCATGCTCTTCCTCATGTTTGCAGCCCTCATGCCGACTGTGCTCACCTTTCCCCTAGAGATG
GCAGTCTTCATGAGGGAGCACCTGAACTACTGGTACAGTCTCAAAGCATATTACCTGGCCAAGA
CGATGGCTGATGTACCCTTCCAGGTTGTGTGCCCAGTGGTGTACTGCAGCATTGTGTACTGGAT
GACTGGCCAGCCGGCTGAGACCAGCCGCTTCCTGCTCTTCTCAGCCTTGTCCATAGCTACCGCC
TTAGTTGCCCAGTCTTTGGGACTCTTGATTGGCGCTGCTTCTACCTCCTTGCAGGTGGCCACCT
TTGTGGGCCCAGTCACTGCCATCCCTGTCCTCTTGTTCTCTGGCTTCTTTGTCAGTTTCAAGAC
CATCCCCACTTACCTGCAATGGAGCTCCTACCTTTCCTATGTCAGGTATGGCTTTGAGGGTCTG
ATCCTGACCATCTATGGCATGGAGAGAGGACATCTGACCTGCTTAGAGGATCACTGCCCATTCC
GGGACCCACAGATCATCTTGCATGAGCTGGATGTGGAGGAGGCCAAGCTCTACATGGACTTCCT
GGTCCTGGGCATTTTCTTCCTTGCCCTGCGGCTGCTTGCATACCTTGTGCTTCGGTACCGGGTC
AAGTCTGAGAGATAGAGCCTGGCTCCTACCTCTTCTGGGCAGGACGCCCCCAGTTCCAGCCCTT
TGGGACTGTTTTAAACTTGTAGACTTGGGTGTCGGTTGCTGGTGCGGCTGCCCTCCTCTCCCTC
AGCTGCTTCACAGGCCGGCTGGCTGGCTGTGGGCCGTGGCTCCCAGCCTCAGCACCAGAGGTAG
GGCTCCAGCCCTCCCATCAAGGCCAGGAGTCTTCCCAAGTTGAAGCAGTTTGTAGCTTCCTCCC
TACTGTCTCCAACACCTGCATGCAAAGACTGCTGGGAGGCTGCCGCCCTCCTCTGCCGAAAGCA
CCCTCCTCTGTTGATTACTTGGGAGCTCCATGTTCTCTAAGCCTTGACTTACAAGCAAGCAATC
AGATTGACCCCCTCTGGGGTCCCCGCCACACAAGTGTTGGTAAACTGTTATCATGTTGGAGTCC
CAGGGCTGGGCCCTGATGGGGTCCCCAGGGAGTCCCATCACGGACATTGGATGGAGTAAGGAGG
GACTCTGGAAGCTTCCTCCTCCTCCCCTTTTCTCCCCACACCCACTTTGGCTAATTTGGACCAT
CTGTTGAGACAGAAGCCGGGCTTTCTGTCTGGCCCACCACTCCCAATCCTGGAGATTGGAGAGA
GCATGGGATGTCCCAGCCCCTTCCCTAAGCCTTTGGTCAAGGTAGATCTCAATGTCACCTCTGC
AATAATGTCTGTGTCACTCTCCCATCTGCCACAGGAACTAGAGAATGTACTTTATTCTGGGGAG
GAAGGTGAGCCGGGGAAGCCCCCACCCTCCTTCTTTGCTGCTCCTGAGGCTCAGTTCCACAGGC
TCCTTTCCTCTCCAGAGTCACATCACAGGCACACAAAGGCCACCAGGCGATCTCAGCCCTACAC
AGGCACCACCCCTTATGGCTCAGAGGAAGAGTGACCATGGCAGGGAGCTGATGGTGGTGGCAGG
AGGGCAGTCCCAATGTCCTCCTGCAGAATCCCACTTTGGAGGCTAAGAACGAGGCTGGTGTGAC
CCAGTGTGGCTCCAGGCTCAGCAGGTGTCTATCTCCCAGTCTTCCCTCCCTCTTGAGCCAGGGG
TGGCACTGGCCTCCTGGAGGTCAGAACCCAACAAGCACAAGAATGGGCATAGCTGGCTTCAGCC
ACTGCTCCCCATGGCCCTCCTTTTGTGCCCCATGCTGACACTCGCTCTCCTGCCCCTTCTCCAG
CTGCCTGCTGCTCACTCAAACTTCTGTTCACATATATTCATCTTCCAGTCAGCAGCTGGGTCCT
GGACATCAGAGCAGCGGGGCCTGGATGCCAGGAGGCAGACACAGCTGTGTCTTCTCTTGGTGGG
TCCGGGATCATCCTATAGCTGGTTTCTCCTCCTCCAGGACTCTTCCCCAGTCCCTGTGCTCACT
CCTCTGTATCTGCTCCAGGTTATTCTCATCACAGAGAGACCAGTTGTATTTGTGGGATTTCACC
CATTATTAATAAAACCTATATTTATACAGTA

hide sequence

RefSeq Acc Id:

XM_039081051 ⟹ XP_038936979

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,611,187 - 44,620,395 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100286	(Get FASTA)	NCBI Sequence Viewer
	XP_006242977	(Get FASTA)	NCBI Sequence Viewer
	XP_006242978	(Get FASTA)	NCBI Sequence Viewer
	XP_017451038	(Get FASTA)	NCBI Sequence Viewer
	XP_038936979	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZCM3	(Get FASTA)	NCBI Sequence Viewer
	EDL95289	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100286 ⟸ NM_001106816

- Sequence:

show sequence

MAEKALEAVGCGLGPGAVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFV
ELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQIL
VNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMS
CSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICT
IHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDL
NPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPELDPIESHTFATSTLTQFCILFRRTFLS
ILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTCEL
ICLAKMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSA
LSIATALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVR
YGFEGLILTIYGMERGHLTCLEDHCPFRDPQIILHELDVEEAKLYMDFLVLGIFFLALRLLAYL
VLRYRVKSER

hide sequence

RefSeq Acc Id:

XP_006242977 ⟸ XM_006242915

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEKALEAVGCGLGPGAVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFV
ELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQIL
VNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMS
CSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICT
IHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDL
NPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPELDPIESHTFATSTLTQFCILFRRTFLS
ILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPL
EMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALSIA
TALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFE
GLILTIYGMERGHLTCLEDHCPFRDPQIILHELDVEEAKLYMDFLVLGIFFLALRLLAYLVLRY
RVKSER

hide sequence

RefSeq Acc Id:

XP_006242978 ⟸ XM_006242916

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEKALEAVGCGLGPGAVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFV
ELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQIL
VNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMS
CSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICT
IHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDL
NPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPELDPIESHTFATSTLTQFCILFRRTFLS
ILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPL
EMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALSIA
TALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFE
GLILTIYGMERGHLTCLEDHCPFRDPQIILHELDVEEAKLYMDFLVLGIFFLALRLLAYLVLRY
RVKSER

hide sequence

RefSeq Acc Id:

XP_017451038 ⟸ XM_017595549

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEKALEAVGCGLGPGAVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFV
ELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQIL
VNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMS
CSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICT
IHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDL
NPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPELDPIESHTFATSTLTQFCILFRRTFLS
ILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPL
EMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALSIA
TALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFE
GLILTIYGMERGHLTCLEDHCPFRDPQIILHELDVEEAKLYMDFLVLGIFFLALRLLAYLVLRY
RVKSER

hide sequence

RefSeq Acc Id:

ENSRNOP00000012534 ⟸ ENSRNOT00000012534

RefSeq Acc Id:	XP_038936979 ⟸ XM_039081051
- Peptide Label:	isoform X2

Protein Domains

ABC transporter

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305840	AgrOrtholog
Ensembl Genes	ENSRNOG00000008862	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000012534	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000012534	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7304259	IMAGE-MGC_LOAD
InterPro	AAA+_ATPase	UniProtKB/Swiss-Prot
	ABC_2_trans	UniProtKB/Swiss-Prot
	ABC_transporter-like	UniProtKB/Swiss-Prot
	ABC_transporter_CS	UniProtKB/Swiss-Prot
	ABCG_dom	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
KEGG Report	rno:300664	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:106016	IMAGE-MGC_LOAD
NCBI Gene	300664	ENTREZGENE
Pfam	ABC2_membrane	UniProtKB/Swiss-Prot
	ABC2_membrane_7	UniProtKB/Swiss-Prot
	ABC_tran	UniProtKB/Swiss-Prot
PhenoGen	Abcg4	PhenoGen
PROSITE	ABC_TRANSPORTER_1	UniProtKB/Swiss-Prot
	ABC_TRANSPORTER_2	UniProtKB/Swiss-Prot
SMART	AAA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	ABCG4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Abcg4	ATP binding cassette subfamily G member 4	Abcg4	ATP-binding cassette, subfamily G (WHITE), member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-11-16	Abcg4	ATP-binding cassette, subfamily G (WHITE), member 4	Abcg4	ATP-binding cassette, sub-family G (WHITE), member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Abcg4	ATP-binding cassette, sub-family G (WHITE), member 4	Abcg4_predicted	ATP-binding cassette, sub-family G (WHITE), member 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Abcg4_predicted	ATP-binding cassette, sub-family G (WHITE), member 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar