Arhgef12 (Rho guanine nucleotide exchange factor 12) - Rat Genome Database

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Gene: Arhgef12 (Rho guanine nucleotide exchange factor 12) Rattus norvegicus
Analyze
Symbol: Arhgef12
Name: Rho guanine nucleotide exchange factor 12
RGD ID: 1305111
Description: Predicted to enable G protein-coupled receptor binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and regulation of blood pressure. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human ARHGEF12 (Rho guanine nucleotide exchange factor 12); PARTICIPATES IN tuberculosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Larg; leukemia-associated Rho guanine nucleotide exchange factor; LOC367072; Rho guanine nucleotide exchange factor (GEF) 12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8852,247,047 - 52,373,158 (-)NCBIGRCr8
mRatBN7.2843,350,070 - 43,475,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl843,353,799 - 43,476,366 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,848,509 - 48,973,746 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0847,127,187 - 47,252,429 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,994,810 - 45,120,046 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0847,259,377 - 47,393,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl847,259,404 - 47,393,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,730,366 - 45,863,838 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,984,042 - 46,106,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,992,807 - 46,115,178 (-)NCBI
Celera842,945,029 - 43,066,538 (-)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15755723   PMID:17971419   PMID:19056867   PMID:24106280   PMID:30962047   PMID:31373336  


Genomics

Comparative Map Data
Arhgef12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8852,247,047 - 52,373,158 (-)NCBIGRCr8
mRatBN7.2843,350,070 - 43,475,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl843,353,799 - 43,476,366 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,848,509 - 48,973,746 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0847,127,187 - 47,252,429 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,994,810 - 45,120,046 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0847,259,377 - 47,393,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl847,259,404 - 47,393,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,730,366 - 45,863,838 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,984,042 - 46,106,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,992,807 - 46,115,178 (-)NCBI
Celera842,945,029 - 43,066,538 (-)NCBICelera
Cytogenetic Map8q22NCBI
ARHGEF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811120,336,413 - 120,489,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11120,336,413 - 120,489,937 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,207,122 - 120,360,646 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611119,713,156 - 119,865,855 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411119,713,155 - 119,865,855NCBI
Celera11117,367,395 - 117,520,075 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,148,609 - 116,301,456 (+)NCBIHuRef
CHM1_111120,095,071 - 120,248,048 (+)NCBICHM1_1
T2T-CHM13v2.011120,360,067 - 120,513,690 (+)NCBIT2T-CHM13v2.0
Arhgef12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,875,138 - 43,017,069 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,875,138 - 43,018,534 (-)EnsemblGRCm39 Ensembl
GRCm38942,963,842 - 43,105,718 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,963,842 - 43,107,239 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,771,925 - 42,913,801 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,714,838 - 42,856,481 (-)NCBIMGSCv36mm8
Celera940,216,251 - 40,358,722 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.14NCBI
Arhgef12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541221,355,575 - 21,497,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541221,344,671 - 21,497,951 (+)NCBIChiLan1.0ChiLan1.0
ARHGEF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29121,040,732 - 121,193,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111122,144,058 - 122,296,653 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011115,173,575 - 115,327,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111119,099,035 - 119,251,522 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11119,098,903 - 119,251,522 (+)Ensemblpanpan1.1panPan2
ARHGEF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1513,519,094 - 13,669,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl513,522,896 - 13,669,155 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha513,572,143 - 13,722,335 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0513,463,369 - 13,613,585 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl513,466,750 - 13,613,459 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1513,600,939 - 13,751,061 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0513,504,903 - 13,655,035 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0513,544,086 - 13,694,183 (-)NCBIUU_Cfam_GSD_1.0
Arhgef12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947102,275,948 - 102,413,933 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365425,262,217 - 5,331,426 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365425,197,100 - 5,335,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl947,475,805 - 47,618,361 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1947,474,566 - 47,621,034 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2952,631,742 - 52,729,251 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11111,744,526 - 111,893,886 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1111,744,597 - 111,894,251 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604314,169,489 - 14,316,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478415,693,044 - 15,784,171 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgef12
362 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:81
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000059868
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82664491246711092Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)84269268450095447Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat

Markers in Region
RH144182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2843,467,453 - 43,467,729 (+)MAPPERmRatBN7.2
Rnor_6.0847,384,501 - 47,384,776NCBIRnor6.0
Rnor_5.0845,855,297 - 45,855,572UniSTSRnor5.0
RGSC_v3.4846,098,559 - 46,098,834UniSTSRGSC3.4
Celera843,058,685 - 43,058,960UniSTS
RH 3.4 Map8408.8UniSTS
Cytogenetic Map8q22UniSTS
AW533862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2843,455,459 - 43,455,611 (+)MAPPERmRatBN7.2
Rnor_6.0847,372,508 - 47,372,659NCBIRnor6.0
Rnor_5.0845,843,304 - 45,843,455UniSTSRnor5.0
RGSC_v3.4846,086,566 - 46,086,717UniSTSRGSC3.4
Celera843,046,692 - 43,046,843UniSTS
RH 3.4 Map8412.4UniSTS
Cytogenetic Map8q22UniSTS
AI102854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2843,363,126 - 43,363,307 (+)MAPPERmRatBN7.2
Rnor_6.0847,280,784 - 47,280,964NCBIRnor6.0
Rnor_5.0845,751,580 - 45,751,760UniSTSRnor5.0
RGSC_v3.4845,994,516 - 45,994,696UniSTSRGSC3.4
Celera842,954,471 - 42,954,651UniSTS
RH 3.4 Map8412.4UniSTS
Cytogenetic Map8q22UniSTS
AI007655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2843,355,131 - 43,355,296 (+)MAPPERmRatBN7.2
Rnor_6.0847,260,707 - 47,260,871NCBIRnor6.0
Rnor_5.0845,731,696 - 45,731,860UniSTSRnor5.0
RGSC_v3.4845,985,375 - 45,985,539UniSTSRGSC3.4
Celera842,946,476 - 42,946,640UniSTS
RH 3.4 Map8414.9UniSTS
Cytogenetic Map8q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 42 57 41 19 41 8 11 74 35 40 11 8
Low 1 1 1
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000059868   ⟹   ENSRNOP00000056613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl843,353,799 - 43,476,366 (-)Ensembl
Rnor_6.0 Ensembl847,274,355 - 47,393,503 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081007   ⟹   ENSRNOP00000074482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl843,353,799 - 43,421,421 (-)Ensembl
Rnor_6.0 Ensembl847,259,404 - 47,339,343 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096158   ⟹   ENSRNOP00000077728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl843,353,799 - 43,421,449 (-)Ensembl
RefSeq Acc Id: NM_001013246   ⟹   NP_001013264
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8852,247,047 - 52,372,376 (-)NCBI
mRatBN7.2843,350,070 - 43,475,404 (-)NCBI
Rnor_6.0847,259,377 - 47,393,042 (-)NCBI
Rnor_5.0845,730,366 - 45,863,838 (-)NCBI
RGSC_v3.4845,984,042 - 46,106,412 (-)RGD
Celera842,945,029 - 43,066,538 (-)RGD
Sequence:
RefSeq Acc Id: XM_039081856   ⟹   XP_038937784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8852,247,047 - 52,373,158 (-)NCBI
mRatBN7.2843,350,070 - 43,475,404 (-)NCBI
RefSeq Acc Id: XM_063265873   ⟹   XP_063121943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8852,247,047 - 52,340,458 (-)NCBI
RefSeq Acc Id: XM_063265874   ⟹   XP_063121944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8852,247,047 - 52,292,566 (-)NCBI
RefSeq Acc Id: NP_001013264   ⟸   NM_001013246
- UniProtKB: Q5BMA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056613   ⟸   ENSRNOT00000059868
RefSeq Acc Id: ENSRNOP00000074482   ⟸   ENSRNOT00000081007
RefSeq Acc Id: XP_038937784   ⟸   XM_039081856
- Peptide Label: isoform X1
- UniProtKB: D3ZYR0 (UniProtKB/TrEMBL),   Q5BMA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000077728   ⟸   ENSRNOT00000096158
RefSeq Acc Id: XP_063121943   ⟸   XM_063265873
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121944   ⟸   XM_063265874
- Peptide Label: isoform X3
Protein Domains
DH   PDZ   PH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305111 AgrOrtholog
BioCyc Gene G2FUF-30763 BioCyc
Ensembl Genes ENSRNOG00000008924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059868.5 UniProtKB/TrEMBL
  ENSRNOT00000081007 ENTREZGENE
  ENSRNOT00000081007.2 UniProtKB/TrEMBL
  ENSRNOT00000096158.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro ARHGEF12_PH UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  GDS_CDC24_CS UniProtKB/TrEMBL
  LARG_RGS UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PH_16 UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Regulat_G_prot_signal-like UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
KEGG Report rno:367072 UniProtKB/TrEMBL
NCBI Gene 367072 ENTREZGENE
PANTHER RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 12 UniProtKB/TrEMBL
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  PH_16 UniProtKB/TrEMBL
  RGS-like UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PhenoGen Arhgef12 PhenoGen
PROSITE DH_1 UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008924 RatGTEx
SMART PDZ UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  Regulat_G_prot_signal_superfam UniProtKB/TrEMBL
UniProt A0A0G2K860_RAT UniProtKB/TrEMBL
  A0A8I5Y1Y6_RAT UniProtKB/TrEMBL
  A6J3T5_RAT UniProtKB/TrEMBL
  D3ZYR0 ENTREZGENE, UniProtKB/TrEMBL
  Q5BMA6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-11 Arhgef12  Rho guanine nucleotide exchange factor 12  Arhgef12  Rho guanine nucleotide exchange factor (GEF) 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Arhgef12  Rho guanine nucleotide exchange factor (GEF) 12  Arhgef12_predicted  Rho guanine nucleotide exchange factor (GEF) 12 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Arhgef12_predicted  Rho guanine nucleotide exchange factor (GEF) 12 (predicted)      Symbol and Name status set to approved 70820 APPROVED