Cd3g (CD3 gamma subunit of T-cell receptor complex) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cd3g (CD3 gamma subunit of T-cell receptor complex) Rattus norvegicus
Analyze
Symbol: Cd3g
Name: CD3 gamma subunit of T-cell receptor complex
RGD ID: 1307718
Description: Predicted to enable identical protein binding activity and transmembrane signaling receptor activity. Predicted to be involved in several processes, including positive thymic T cell selection; protein transport; and regulation of lymphocyte apoptotic process. Predicted to be located in cytosol and plasma membrane. Predicted to be part of alpha-beta T cell receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 17. Orthologous to human CD3G (CD3 gamma subunit of T-cell receptor complex); PARTICIPATES IN adaptive immune response pathway; interleukin-12 signaling pathway; Chagas disease pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD3 molecule, gamma; CD3 antigen, gamma polypeptide; CD3 gamma-chain; CD3 molecule, gamma polypeptide; CD3g molecule; LOC300678; T-cell receptor T3 gamma chain; T-cell surface glycoprotein CD3 gamma chain
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,177,572 - 54,184,087 (-)NCBIGRCr8
mRatBN7.2845,280,797 - 45,287,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,281,204 - 45,287,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,776,665 - 50,782,763 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0849,055,387 - 49,061,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,925,945 - 46,932,045 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,274,553 - 49,280,943 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,274,960 - 49,280,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,892,428 - 47,898,819 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,924,369 - 47,930,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,932,753 - 47,939,309 (-)NCBI
Celera844,865,997 - 44,871,910 (-)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 15 of 15 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatadenosine deaminase deficiency  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Bubble boy diseaseClinVarPMID:1635567 more ...
Cd3gRatCD3epsilon deficiency  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: CD3epsilon deficiencyClinVarPMID:14602880 more ...
Cd3gRatchromosome 11 partial duplication syndrome  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Distal trisomy 11qClinVarPMID:25741868
Cd3gRatDwarfism  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Short statureClinVarPMID:32581362
Cd3gRatFamilial Atrial Fibrillation 14  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Atrial fibrillation more ...ClinVarPMID:28492532
Cd3gRatglycogen storage disease Ib  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Glucose-6-phosphate transport defectClinVarPMID:28492532
Cd3gRatimmunodeficiency 17  ISOCD3G (Homo sapiens)8554872ClinVar more ...ClinVarPMID:14602880 more ...
Cd3gRatimmunodeficiency 18  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 18ClinVarPMID:14602880 more ...
Cd3gRatimmunodeficiency 19  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 19ClinVarPMID:14602880 more ...
Cd3gRatinflammatory bowel disease 28  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Inflammatory bowel disease 28ClinVarPMID:14602880 more ...
Cd3gRatintellectual disability  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Cd3gRatisolated microphthalmia 5  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Isolated microphthalmia 5ClinVarPMID:28492532
Cd3gRatlong QT syndrome 10  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndrome 10ClinVarPMID:28492532
Cd3gRatRASopathy  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: RASopathyClinVarPMID:28492532
Cd3gRatsevere combined immunodeficiency  ISOCD3G (Homo sapiens)8554872ClinVar Annotator: match by term: Severe combined immunodeficiency diseaseClinVarPMID:1635567 more ...
1 to 15 of 15 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatimmunodeficiency 17  ISOCD3G (Homo sapiens)7240710 OMIM 

1 to 20 of 81 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of CD3G mRNACTDPMID:16079270
Cd3gRat17beta-estradiol decreases expressionISOCd3g (Mus musculus)6480464Estradiol results in decreased expression of CD3G mRNACTDPMID:19484750
Cd3gRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of CD3G mRNACTDPMID:34747641
Cd3gRat2,4,6-trinitrobenzenesulfonic acid decreases expressionEXP 6480464Trinitrobenzenesulfonic Acid results in decreased expression of CD3G mRNACTDPMID:23537331
Cd3gRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOCd3g (Mus musculus)64804642 more ...CTDPMID:38648751
Cd3gRat3',5'-cyclic AMP decreases phosphorylationISOCd3g (Mus musculus)6480464Cyclic AMP results in decreased phosphorylation of CD3G proteinCTDPMID:2824607
Cd3gRat3,4-methylenedioxymethamphetamine increases expressionEXP 6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of CD3G mRNACTDPMID:30071829
Cd3gRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of CD3G mRNACTDPMID:30047161
Cd3gRat7,12-dimethyltetraphene increases expressionEXP 64804649 more ...CTDPMID:19480007
Cd3gRatacetamide increases expressionEXP 6480464acetamide results in increased expression of CD3G mRNACTDPMID:31881176
Cd3gRataflatoxin B1 increases methylationISOCD3G (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of CD3G geneCTDPMID:27153756
Cd3gRatalendronic acid affects expressionEXP 6480464Alendronate affects the expression of CD3G mRNACTDPMID:16079270
Cd3gRatall-trans-retinoic acid increases expressionISOCD3G (Homo sapiens)6480464Tretinoin results in increased expression of CD3G mRNACTDPMID:12875902
Cd3gRatalpha-Zearalanol increases expressionEXP 6480464Zeranol results in increased expression of CD3G mRNACTDPMID:35163327
Cd3gRataluminium trifluoride multiple interactionsISOCd3g (Mus musculus)6480464Tetradecanoylphorbol Acetate inhibits the reaction [aluminum fluoride results in increased phosphorylation of CD3G protein]CTDPMID:2824607
Cd3gRataluminium trifluoride increases phosphorylationISOCd3g (Mus musculus)6480464aluminum fluoride results in increased phosphorylation of CD3G proteinCTDPMID:2824607
Cd3gRatamitrole increases expressionEXP 6480464Amitrole results in increased expression of CD3G mRNACTDPMID:30047161
Cd3gRatammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of CD3G mRNACTDPMID:16483693
Cd3gRatamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of CD3G mRNACTDPMID:30779732
Cd3gRatantirheumatic drug decreases expressionISOCD3G (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of CD3G mRNACTDPMID:24449571

1 to 20 of 81 rows

Biological Process
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatadaptive immune response involved_inIEAUniProtKB-KW:KW-10641600115GO_REF:0000043UniProtGO_REF:0000043
Cd3gRatbiological_process  ND 159840703/2007: no relevant rat dataRGD 
Cd3gRatcell surface receptor signaling pathway involved_inIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatcell surface receptor signaling pathway involved_inIBAMGI:88332 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd3gRatcell surface receptor signaling pathway involved_inISOCD3G (Homo sapiens)1624291 PMID:12407027RGDPMID:12407027
Cd3gRatcell surface receptor signaling pathway involved_inIEAInterPro:IPR0031101600115GO_REF:0000002InterProGO_REF:0000002
Cd3gRatcell surface receptor signaling pathway involved_inISSUniProtKB:P096931600115GO_REF:0000024UniProtGO_REF:0000024
Cd3gRatestablishment or maintenance of cell polarity involved_inISOCD3G (Homo sapiens)1624291 PMID:12407027RGDPMID:12407027
Cd3gRatestablishment or maintenance of cell polarity involved_inISSUniProtKB:P096931600115GO_REF:0000024UniProtGO_REF:0000024
Cd3gRatestablishment or maintenance of cell polarity involved_inIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatimmune system process involved_inIEAUniProtKB-KW:KW-03911600115GO_REF:0000043UniProtGO_REF:0000043
Cd3gRatpositive thymic T cell selection involved_inIBAMGI:88331 and PANTHER:PTN0000602801600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd3gRatprotein transport involved_inISOCD3G (Homo sapiens)1624291 PMID:12794121RGDPMID:12794121
Cd3gRatprotein transport involved_inIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatprotein transport involved_inISSUniProtKB:P096931600115GO_REF:0000024UniProtGO_REF:0000024
Cd3gRatregulation of lymphocyte apoptotic process involved_inISSUniProtKB:P096931600115GO_REF:0000024UniProtGO_REF:0000024
Cd3gRatregulation of lymphocyte apoptotic process involved_inISOCD3G (Homo sapiens)1624291 PMID:12407027RGDPMID:12407027
Cd3gRatregulation of lymphocyte apoptotic process involved_inIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 18 of 18 rows

Cellular Component
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatalpha-beta T cell receptor complex part_ofISOCD3G (Homo sapiens)1624291 PMID:31461748 and PMID:9485181RGDPMID:31461748 and PMID:9485181
Cd3gRatalpha-beta T cell receptor complex part_ofISOCd3g (Mus musculus)1624291 PMID:9208839RGDPMID:9208839
Cd3gRatalpha-beta T cell receptor complex part_ofIBAMGI:88331 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd3gRatalpha-beta T cell receptor complex part_ofIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatalpha-beta T cell receptor complex part_ofIEAUniProtKB:P11942 and ensembl:ENSMUSP000000021011600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatalpha-beta T cell receptor complex part_ofIEAARBA:ARBA000272781600115GO_REF:0000117UniProtGO_REF:0000117
Cd3gRatcytosol located_inIEAUniProtKB:B0YIY5 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatcytosol located_inISOCD3G (Homo sapiens)1624291 RGDGO_REF:0000052
Cd3gRatcytosol located_inIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatexternal side of plasma membrane is_active_inIBAMGI:88332 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd3gRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cd3gRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Cd3gRatmembrane located_inIEAInterPro:IPR0031101600115GO_REF:0000002InterProGO_REF:0000002
Cd3gRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Cd3gRatplasma membrane located_inIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatplasma membrane located_inIEAUniProtKB:B0YIY5 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatplasma membrane located_inISOCD3G (Homo sapiens)1624291 PMID:31461748RGDGO_REF:0000052 and PMID:31461748
Cd3gRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
1 to 18 of 18 rows

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatidentical protein binding enablesIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
Cd3gRatidentical protein binding enablesISOCD3G (Homo sapiens)1624291 PMID:14967045RGDPMID:14967045
Cd3gRatprotein binding enablesISOCD3G (Homo sapiens)1624291UniProtKB:E9PQX1 more ...RGDPMID:32296183
Cd3gRatprotein binding enablesISSUniProtKB:P096931600115GO_REF:0000024UniProtGO_REF:0000024
Cd3gRattransmembrane signaling receptor activity enablesISSUniProtKB:P096931600115GO_REF:0000024UniProtGO_REF:0000024
Cd3gRattransmembrane signaling receptor activity enablesIBAPANTHER:PTN000060280 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cd3gRattransmembrane signaling receptor activity enablesISOCD3G (Homo sapiens)1624291 PMID:12794121RGDPMID:12794121
Cd3gRattransmembrane signaling receptor activity enablesIEAInterPro:IPR0031101600115GO_REF:0000002InterProGO_REF:0000002
Cd3gRattransmembrane signaling receptor activity enablesIEAUniProtKB:P09693 and ensembl:ENSP000004314451600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 9 of 9 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatadaptive immune response pathway  ISOCD3G (Homo sapiens)1549501 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatChagas disease pathway  IEA 6907045 KEGGrno:05142
Cd3gRatmeasles pathway  IEA 6907045 KEGGrno:05162
Cd3gRatT cell receptor signaling pathway  IEA 6907045 KEGGrno:04660

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd3gRatinterleukin-12 signaling pathway  ISOCD3G (Homo sapiens)6484113 PIDPID:200045

1 to 12 of 12 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. In vitro production and characterization of partly assembled human CD3 complexes. Kastrup J, etal., Scand J Immunol 2002 Nov;56(5):436-42.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Assembly of the TCR/CD3 complex: CD3 epsilon/delta and CD3 epsilon/gamma dimers associate indistinctly with both TCR alpha and TCR beta chains. Evidence for a double TCR heterodimer model. San Jose E, etal., Eur J Immunol 1998 Jan;28(1):12-21.
1 to 12 of 12 rows
PMID:1531205   PMID:9208839   PMID:12407027   PMID:12794121   PMID:14967045  



Cd3g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,177,572 - 54,184,087 (-)NCBIGRCr8
mRatBN7.2845,280,797 - 45,287,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,281,204 - 45,287,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,776,665 - 50,782,763 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0849,055,387 - 49,061,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,925,945 - 46,932,045 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,274,553 - 49,280,943 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,274,960 - 49,280,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,892,428 - 47,898,819 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,924,369 - 47,930,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,932,753 - 47,939,309 (-)NCBI
Celera844,865,997 - 44,871,910 (-)NCBICelera
Cytogenetic Map8q22NCBI
CD3G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,344,344 - 118,355,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,344,344 - 118,355,161 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,215,059 - 118,225,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,720,311 - 117,729,261 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,720,310 - 117,729,261NCBI
Celera11115,372,928 - 115,382,366 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,148,956 - 114,158,393 (+)NCBIHuRef
CHM1_111118,101,492 - 118,110,943 (+)NCBICHM1_1
T2T-CHM13v2.011118,360,702 - 118,371,519 (+)NCBIT2T-CHM13v2.0
Cd3g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,880,870 - 44,891,729 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,880,870 - 44,891,729 (-)EnsemblGRCm39 Ensembl
GRCm38944,969,572 - 44,980,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,969,572 - 44,980,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,777,655 - 44,788,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,720,683 - 44,731,419 (-)NCBIMGSCv36mm8
Celera942,234,684 - 42,245,549 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Cd3g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,486,284 - 19,494,922 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,486,066 - 19,496,474 (+)NCBIChiLan1.0ChiLan1.0
LOC100979261
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,036,442 - 119,056,649 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,141,391 - 120,161,609 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,179,270 - 113,190,104 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,111,132 - 117,120,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,111,132 - 117,120,566 (+)Ensemblpanpan1.1panPan2
CD3G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,379,788 - 15,391,271 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,380,633 - 15,391,214 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,429,235 - 15,442,031 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,320,796 - 15,333,597 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,320,127 - 15,333,550 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,459,062 - 15,471,859 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,362,517 - 15,375,316 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,403,667 - 15,416,467 (-)NCBIUU_Cfam_GSD_1.0
Cd3g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,482,219 - 100,490,660 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365423,405,084 - 3,412,104 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD3G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,645,364 - 45,704,745 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,645,243 - 45,656,779 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,686,376 - 50,697,901 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD3G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,721,150 - 109,730,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,720,789 - 109,732,014 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,305,415 - 16,315,058 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd3g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,738,686 - 13,748,415 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,738,424 - 13,748,311 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cd3g
50 total Variants

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:124
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000021390
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat

1 to 10 of 64 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 41 49 89 88 57 25 57 6 203 86 29 44 52 31



Ensembl Acc Id: ENSRNOT00000021390   ⟹   ENSRNOP00000021390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,281,204 - 45,287,147 (-)Ensembl
Rnor_6.0 Ensembl849,274,960 - 49,280,901 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109307   ⟹   ENSRNOP00000088440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,281,204 - 45,287,094 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117902   ⟹   ENSRNOP00000078789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl845,283,654 - 45,287,147 (-)Ensembl
RefSeq Acc Id: NM_001077646   ⟹   NP_001071114
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8854,177,977 - 54,183,918 (-)NCBI
mRatBN7.2845,281,204 - 45,287,147 (-)NCBI
Rnor_6.0849,274,960 - 49,280,901 (-)NCBI
Rnor_5.0847,892,428 - 47,898,819 (-)NCBI
RGSC_v3.4847,924,369 - 47,930,550 (-)RGD
Celera844,865,997 - 44,871,910 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242932   ⟹   XP_006242994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8854,177,572 - 54,184,087 (-)NCBI
mRatBN7.2845,280,797 - 45,287,242 (-)NCBI
Rnor_6.0849,274,553 - 49,280,943 (-)NCBI
Rnor_5.0847,892,428 - 47,898,819 (-)NCBI
Sequence:
Protein RefSeqs NP_001071114 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242994 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB21286 (Get FASTA)   NCBI Sequence Viewer  
  EDL95343 (Get FASTA)   NCBI Sequence Viewer  
  EDL95344 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021390
GenBank Protein Q64159 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001071114   ⟸   NM_001077646
- Peptide Label: precursor
- UniProtKB: Q64159 (UniProtKB/Swiss-Prot),   F1M9F8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242994   ⟸   XM_006242932
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000021390   ⟸   ENSRNOT00000021390
Ensembl Acc Id: ENSRNOP00000078789   ⟸   ENSRNOT00000117902
Ensembl Acc Id: ENSRNOP00000088440   ⟸   ENSRNOT00000109307
Name Modeler Protein Id AA Range Protein Structure
AF-Q64159-F1-model_v2 AlphaFold Q64159 1-182 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695906
Promoter ID:EPDNEW_R6431
Type:initiation region
Name:Cd3g_1
Description:CD3g molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0849,280,946 - 49,281,006EPDNEW


1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-30690 BioCyc
Ensembl Genes ENSRNOG00000015945 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000021390 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro CD3_esu/gsu/dsu UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_4 UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Phos_immunorcpt_sig_ITAM UniProtKB/Swiss-Prot
KEGG Report rno:300678 UniProtKB/Swiss-Prot
NCBI Gene 300678 ENTREZGENE
PANTHER PTHR10570 UniProtKB/Swiss-Prot
  T-CELL SURFACE GLYCOPROTEIN CD3 GAMMA CHAIN UniProtKB/Swiss-Prot
Pfam Ig_4 UniProtKB/Swiss-Prot
  ITAM UniProtKB/Swiss-Prot
PhenoGen Cd3g PhenoGen
PROSITE ITAM_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015945 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt A0A8I6A9Z4_RAT UniProtKB/TrEMBL
  A0A8I6G3U5_RAT UniProtKB/TrEMBL
  A6J420_RAT UniProtKB/TrEMBL
  A6J421_RAT UniProtKB/TrEMBL
  CD3G_RAT UniProtKB/Swiss-Prot
  F1M9F8 ENTREZGENE, UniProtKB/TrEMBL
  Q64159 ENTREZGENE
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-14 Cd3g  CD3 gamma subunit of T-cell receptor complex  Cd3g  CD3g molecule  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-02 Cd3g  CD3g molecule  Cd3g  CD3 molecule, gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Cd3g  CD3 molecule, gamma polypeptide  Cd3g  CD3 antigen, gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cd3g  CD3 antigen, gamma polypeptide  Cd3g_predicted  CD3 antigen, gamma polypeptide (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cd3g_predicted  CD3 antigen, gamma polypeptide (predicted)      Symbol and Name status set to approved 70820 APPROVED