Zbtb44 (zinc finger and BTB domain containing 44)

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Gene: Zbtb44 (zinc finger and BTB domain containing 44) Rattus norvegicus

Analyze

Symbol:

Zbtb44

Name:

zinc finger and BTB domain containing 44

RGD ID:

1308984

Description:

Predicted to have DNA binding activity and metal ion binding activity. Predicted to localize to nucleus. Orthologous to human ZBTB44 (zinc finger and BTB domain containing 44); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

BTB (POZ) domain containing 15; BTB/POZ domain-containing protein 15; Btbd15; LOC363035; MGC125242; RGD1308984; similar to RIKEN cDNA 6030404E16; zinc finger and BTB domain-containing protein 44

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI
Rnor_6.0 Ensembl	8	32,165,810 - 32,217,476 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	32,165,388 - 32,223,341 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	30,841,899 - 30,894,133 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	30,850,442 - 30,921,405 (+)	NCBI
Celera	8	30,928,937 - 30,979,901 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

Jacobsen Syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

carbon nanotube (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

elemental selenium (ISO)

furan (EXP)

indometacin (ISO)

isoprenaline (ISO)

maneb (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

paracetamol (ISO)

paraquat (ISO)

phenacetin (EXP)

phenobarbital (ISO)

phenylhydrazine (EXP)

phenylmercury acetate (ISO)

PhIP (EXP)

pinosylvin (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

pyridaben (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

trans-pinosylvin (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated


1.	RGD automated data pipeline
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Zbtb44
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI
Rnor_6.0 Ensembl	8	32,165,810 - 32,217,476 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	32,165,388 - 32,223,341 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	30,841,899 - 30,894,133 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	30,850,442 - 30,921,405 (+)	NCBI
Celera	8	30,928,937 - 30,979,901 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

ZBTB44
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	130,226,677 - 130,314,917 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	130,226,677 - 130,314,917 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	130,096,572 - 130,184,812 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	129,608,335 - 129,689,817 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	11	127,264,450 - 127,352,483 (-)	NCBI
Cytogenetic Map	11	q24.3	NCBI
HuRef	11	126,049,248 - 126,084,496 (-)	NCBI		HuRef
CHM1_1	11	129,982,379 - 130,070,414 (-)	NCBI		CHM1_1

Zbtb44
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	30,941,016 - 30,987,181 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	30,941,940 - 30,987,181 (+)	Ensembl
GRCm38	9	31,029,720 - 31,075,885 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	31,030,644 - 31,075,885 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	30,838,229 - 30,883,470 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	30,780,209 - 30,819,776 (+)	NCBI			mm8
Celera	9	28,289,333 - 28,335,081 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI

Zbtb44
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	31,147,147 - 31,205,226 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	31,146,620 - 31,205,226 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB44
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	128,929,819 - 129,017,533 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	128,929,826 - 128,964,790 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	125,037,645 - 125,125,711 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ZBTB44
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	4,574,604 - 4,641,431 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	4,574,243 - 4,635,066 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	4,634,397 - 4,702,362 (+)	NCBI
ROS_Cfam_1.0	5	4,534,775 - 4,601,607 (+)	NCBI
UMICH_Zoey_3.1	5	4,568,897 - 4,635,604 (+)	NCBI
UNSW_CanFamBas_1.0	5	4,577,604 - 4,644,363 (+)	NCBI
UU_Cfam_GSD_1.0	5	4,604,461 - 4,671,747 (+)	NCBI

Zbtb44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	112,330,715 - 112,397,948 (-)	NCBI
SpeTri2.0	NW_004936572	2,052,408 - 2,117,120 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB44
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	56,947,073 - 57,017,829 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	56,947,145 - 57,018,803 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	63,071,002 - 63,152,634 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB44
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	121,317,527 - 121,382,608 (-)	NCBI

Zbtb44
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624812	4,631,468 - 4,694,218 (-)	NCBI

Position Markers

D8Rat162

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	8	32,201,981 - 32,202,233	NCBI	Rnor6.0
Rnor_5.0	8	32,227,585 - 32,227,837	UniSTS	Rnor5.0
RGSC_v3.4	8	30,878,636 - 30,878,889	RGD	RGSC3.4
RGSC_v3.4	8	30,878,637 - 30,878,889	UniSTS	RGSC3.4
RGSC_v3.1	8	30,887,403 - 30,887,655	RGD
Celera	8	30,964,403 - 30,964,657	UniSTS
RH 3.4 Map	8	246.2	RGD
RH 3.4 Map	8	246.2	UniSTS
SHRSP x BN Map	8	21.82	UniSTS
SHRSP x BN Map	8	21.82	RGD
Cytogenetic Map	8	q13	UniSTS

RH128981

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	8	32,217,149 - 32,217,339	NCBI	Rnor6.0
Rnor_5.0	8	32,242,753 - 32,242,943	UniSTS	Rnor5.0
RGSC_v3.4	8	30,893,805 - 30,893,995	UniSTS	RGSC3.4
Celera	8	30,979,573 - 30,979,763	UniSTS
RH 3.4 Map	8	243.6	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH142178

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	8	32,220,143 - 32,220,276	UniSTS	Rnor5.0
RGSC_v3.4	8	30,972,451 - 30,972,584	UniSTS	RGSC3.4
Celera	8	31,122,808 - 31,122,941	UniSTS
Cytogenetic Map	8	q13	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2108128	47108128	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2108128	47108128	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2108128	47108128	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2108128	47108128	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	7368076	52368076	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	7368076	52368076	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	7368076	52368076	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	8738677	53738677	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	9531047	119211942	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	10388439	55388439	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	10388439	55388439	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10938911	120496129	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	11373267	57541668	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	11373509	45712344	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	11373509	45712344	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	11448251	56448251	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	11448251	56448251	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	17666555	62666555	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	20717592	65717592	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	21464919	91140553	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	21813070	100873963	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	27841496	72841496	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	28168023	50708951	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	29867983	59908353	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	29867983	106526740	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	29867983	106526740	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	29867983	106526740	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	30144800	75144800	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	30144800	75144800	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	30845450	33558764	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	30918112	58858224	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	30918112	75918112	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	30918112	107206309	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	32201981	54065241	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	32201981	75971421	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	674
Count of miRNA genes:	284
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000007539
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		26	44	28	19	28	8	8	73	28	41	11	8
Low	3	17	13	13		13		3	1	7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000007539 ⟹ ENSRNOP00000007539

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	32,165,810 - 32,217,476 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081145 ⟹ ENSRNOP00000069596

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	32,188,617 - 32,214,469 (+)	Ensembl

RefSeq Acc Id:

NM_001034942 ⟹ NP_001030114

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	29,466,498 - 29,518,163 (+)	NCBI
Rnor_6.0	8	32,165,810 - 32,217,477 (+)	NCBI
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI
RGSC_v3.4	8	30,841,899 - 30,894,133 (+)	RGD
Celera	8	30,928,937 - 30,979,901 (+)	RGD

Sequence:

show sequence

CCCGGGTTGCCGCCGCTACCGCCACCGCCACCTCGCCGCCCCAGCCTGGCGGGGAAGAGGAGGA
GCAGTTGCAGGCCTCCGGGCCCCCGCACCGCCGCCCGCAGGGTAATTCTGATTCATTGCATCCT
TGAAGAGCATCAATAGAAGAGGGGGAAAAAAGATGGGTGTGAAAACATTTACTCACAGCTCCTC
TTCCCACAGCCAGGAAATGCTGGGAAAACTAAATATGCTACGAAATGACGGACATTTTTGTGAT
ATCACTATTCGTGTCCAGGACAGAATCTTCCGGGCTCACAAGGTGGTACTAGCAGCTTGCAGTG
ATTTCTTTCGAACCAAACTTGTGGGCCAAACAGAGGATGAGAACAAAAATGTGTTGGATCTGCA
TCATGTTACAGTGACTGGCTTTATACCTCTGCTGGAATACGCTTACACAGCCACTCTGTCCATT
AACACGGAAAATATTATTGATGTTCTAGCAGCAGCCAGCTATATGCAAATGTTTAGTGTTGCTA
GTACGTGCTCAGAGTTCATGAAATCAAGTATTTTGTGGAATACACCTAATAGCCAACCAGAAAA
GGGTCTAGATGCTGGACAAGAAAATAGTTCCAACTGCAATTTTACTTCTCGAGATGGAAGCATT
TCTCCAGTGTCTTCCGAGTGCAGTGCTGTGGAAAGGACCATTCCTGTCTGCCGAGAGTCCCGGA
GAAAACGCAAAAGCTACATTGTTATGTCTCCTGAGAGCCCTGTAAAATGTAGCACACAAACAAA
TTCCCCCCAGGTACTGAATTCTTCAGCTTCCTATGCAGAAAATAGAAATCAGCCAGTTGATTCT
TCTTTAGCGTTTCCATGGACTTTCCCTTTTGGAATTGATAGGAGGATTCAGCCTGAGAAAGCAA
AGCAGGCAGAAAATACCCGGACTTTAGAGTTGCCTGGCCCGTCCGAGGCAGGTAGAAGGATGGC
TGACTATGTGACTTGTGAGAGCACAAAAACTACCTTGCCTCTAGGTACAGAAGAAGACGTCCGG
GTCAAAGTAGAAAGATTAAGTGATGAGGAGGTTCATGAGGAAGTGTCCCAGCCCGTTAGTGCAT
CTCAGAGCTCACTGAGTGATCAGCAGACGGTGCCTGGAAGTGAACCAGTTCAAGAGGACCTTCT
GATTAGTCCACAGTCTTCCTCTATAGGCTCAGTGGATGAAGGAGTCACTGAAGGATTGCCTACA
CTTCAGAGCACTTCCAGCACCAATGCTCATGCAGATGAGGATGACAGATTGGAAAATGTTCAGT
ATCCCTATCAACTGTACATTGCTCCTTCTACCAGCAGTACAGAACGACCAAGTCCAAATGGTCC
AGACAGACCTTTTCAATGTCCAACCTGTGGGGTTCGCTTCACCCGTATTCAGAATCTAAAACAG
CACATGCTTATCCACTCAGGAATTAAACCATTTCAGTGTGACTGCTGTGGAAAAAAGTTTACCA
GGGCTTACTCGCTAAAGATGCATCGCCTAAAGCACGAAGTGATTTCTTAGTACCGGACTACTTA
AGCCAGGAGCAAGAAGAGGCCCTTGTTCAGTATGATCTTGGAGAGCACACTTCTGAAAGCAGCT
CTTCTGTTCAAATGCCTGTGATTTCACAGGTCTCCTCAACCCACAACTGTGAAAGCACTTTTCC
CCTGGGGTCTCTTGGTGGGCTTGCAGAAAAGGAGGAGGACCTGCAAGAGCAGCCAAAGACCAGT
GCTCACGATGATGCTCCCCGAGATGACCCCCCCAAGGCAGAGCTGTCTTCTATAACTATTGAGT
GATTCTGTGATTGGCCTGGGTTTTGGGGTTTTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTT
TGTTTTGGAAAGTGCCTGTGCTTGGTCTCATATGTTTAAATTTAATTTAATTTTTTAAAAAGGG
GTTCCCTTTGTAAGCTCTGAAACTAGAGGGTTCTTTGTTTTGTTTTGTTTTTTCATAGCTTTAG
TATGTATACAATAAGGTAACATTGAAACAGAACATAAACTTTAAGAGTAAGGAAAAGCAGCTGA
CTTAGAACATGGCAGTTCTTCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAGAAGTCGGGT
TGTTGTTGACCTTTCTGAGATAAGAGGGCTAATGAGAAGTTACTAAAGAGTTTGACAAAGCCTA
AGGAATGTTTACTCCTGGACACAGGGTGTTAGAAACCCTGTAGTTTTGGAAGAATTTACGGTAT
TTTTTTTTCAGATGACGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTTTTTTTTTAAGC
CATTTTGGATTTTCATGGTGAAAAATTAGTATCAGGCAGGTATTTTCTGTACCTTTGTAGTACT
CCTCCAAAGGCTAGGTGTGGTTGAGAAGAGTCAGGCGCGCGTGGAATGGCAGGGCGCAGAACGA
GGTACGTATACCCAGCTTTGCAGGAACTCTCTTCAGACTGTTTTTTTTACTGGCCATTGACTGC
TGACATCTGGTTAACTAGGACATTGCTCAGATAAGTGTCCTCGTGTCCCATCAACAGCACTTTC
ACTTGCATATATACTATTGTGCTGCCATATAAAAGAAAAATATTGAAGATATTCTATATTTTAT
ATATAGGTTTATGTATTGTTGAGGATGTCGATGCTGTGCTGTTTTGGACAAAATAAAAGAATTC
TGTTTTGAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242768 ⟹ XP_006242830

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	29,466,057 - 29,524,027 (+)	NCBI
Rnor_6.0	8	32,165,389 - 32,223,341 (+)	NCBI
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI

Sequence:

show sequence

GTGCCCCCAAACAGGCTGGAGTGAAACGAGCGGCTACGGCGGCGCCGGCTCGCACGCGCGCTGC
GGCGGCTCCCTCCCAGCCTCTCCTCCTCCTCTCCCCTCAGTCCCTTTCCCCTTCCCCACCCCGC
CCCGCCGGGCCAGCGCGAGCCGTCGCCCGCCCTCGGCAAACCGCCCCCAACCGCCGCCCGCGCG
CAGCGGGCTGGGCCCCTCGCTCCTCCCCTCAGGCCCACGGGCGCCGGGCGCTCTCCTCCTCGCG
CCTCGCACTCTCGCACTCTCGCACCTCGCGTGCACGCGGGTGAGCGGCGCCGCCATGCGCGCCC
AGTCCCAGGCTGCACACTGGCCTAGGCGCGGCGGCCCGAGATAGGGTCCCCTGAGCCTCCCGGG
GGAGGAGAGGAGCCAGCCGCGCGCTCCGCCCCCTCCCCCCGGGTTGCCGCCGCTACCGCCACCG
CCACCTCGCCGCCCCAGCCTGGCGGGGAAGAGGAGGAGCAGTTGCAGGCCTCCGGGCCCCCGCA
CCGCCGCCCGCAGGGTAATTCTGATTCATTGCATCCTTGAAGAGCATCAATAGAAGAGGGGGAA
AAAAGATGGGTGTGAAAACATTTACTCACAGCTCCTCTTCCCACAGCCAGGAAATGCTGGGAAA
ACTAAATATGCTACGAAATGACGGACATTTTTGTGATATCACTATTCGTGTCCAGGACAGAATC
TTCCGGGCTCACAAGGTGGTACTAGCAGCTTGCAGTGATTTCTTTCGAACCAAACTTGTGGGCC
AAACAGAGGATGAGAACAAAAATGTGTTGGATCTGCATCATGTTACAGTGACTGGCTTTATACC
TCTGCTGGAATACGCTTACACAGCCACTCTGTCCATTAACACGGAAAATATTATTGATGTTCTA
GCAGCAGCCAGCTATATGCAAATGTTTAGTGTTGCTAGTACGTGCTCAGAGTTCATGAAATCAA
GTATTTTGTGGAATACACCTAATAGCCAACCAGAAAAGGGTCTAGATGCTGGACAAGAAAATAG
TTCCAACTGCAATTTTACTTCTCGAGATGGAAGCATTTCTCCAGTGTCTTCCGAGTGCAGTGCT
GTGGAAAGGACCATTCCTGTCTGCCGAGAGTCCCGGAGAAAACGCAAAAGCTACATTGTTATGT
CTCCTGAGAGCCCTGTAAAATGTAGCACACAAACAAATTCCCCCCAGGTACTGAATTCTTCAGC
TTCCTATGCAGAAAATAGAAATCAGCCAGTTGATTCTTCTTTAGCGTTTCCATGGACTTTCCCT
TTTGGAATTGATAGGAGGATTCAGCCTGAGAAAGCAAAGCAGGCAGAAAATACCCGGACTTTAG
AGTTGCCTGGCCCGTCCGAGGCAGGTAGAAGGATGGCTGACTATGTGACTTGTGAGAGCACAAA
AACTACCTTGCCTCTAGGTACAGAAGAAGACGTCCGGGTCAAAGTAGAAAGATTAAGTGATGAG
GAGGTTCATGAGGAAGTGTCCCAGCCCGTTAGTGCATCTCAGAGCTCACTGAGTGATCAGCAGA
CGGTGCCTGGAAGTGAACCAGTTCAAGAGGACCTTCTGATTAGTCCACAGTCTTCCTCTATAGG
CTCAGTGGATGAAGGAGTCACTGAAGGATTGCCTACACTTCAGAGCACTTCCAGCACCAATGCT
CATGCAGATGAGGATGACAGATTGGAAAATGTTCAGTATCCCTATCAACTGTACATTGCTCCTT
CTACCAGCAGTACAGAACGACCAAGTCCAAATGGTCCAGACAGACCTTTTCAATGTCCAACCTG
TGGGGTTCGCTTCACCCGTATTCAGAATCTAAAACAGCACATGCTTATCCACTCAGGAATTAAA
CCATTTCAGTGTGACTGCTGTGGAAAAAAGTTTACCAGGGCTTACTCGCTAAAGATGCATCGCC
TAAAGCACGAAGGTAAACGCTGTTTCCGGTGCCAGATATGTAGTGCCACTTTCACTTCCTTCGG
GGAGTATAAACACCATATGAGGGTTTCCCGGCACATTATCCGCAAGCCTCGGATTTACGAGTGC
AAAACATGTGGCGCCATGTTCACCAACTCTGGAAATTTAATCGTGCACCTGAGGAGTCTGAACC
ATGAAGCATCAGAGCTAGCAAACTACTTCCAGAGCAGTGATTTCTTAGTACCGGACTACTTAAG
CCAGGAGCAAGAAGAGGCCCTTGTTCAGTATGATCTTGGAGAGCACACTTCTGAAAGCAGCTCT
TCTGTTCAAATGCCTGTGATTTCACAGGTCTCCTCAACCCACAACTGTGAAAGCACTTTTCCCC
TGGGGTCTCTTGGTGGGCTTGCAGAAAAGGAGGAGGACCTGCAAGAGCAGCCAAAGACCAGTGC
TCACGATGATGCTCCCCGAGATGACCCCCCCAAGGCAGAGCTGTCTTCTATAACTATTGAGTGA
TTCTGTGATTGGCCTGGGTTTTGGGGTTTTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTG
TTTTGGAAAGTGCCTGTGCTTGGTCTCATATGTTTAAATTTAATTTAATTTTTTAAAAAGGGGT
TCCCTTTGTAAGCTCTGAAACTAGAGGGTTCTTTGTTTTGTTTTGTTTTTTCATAGCTTTAGTA
TGTATACAATAAGGTAACATTGAAACAGAACATAAACTTTAAGAGTAAGGAAAAGCAGCTGACT
TAGAACATGGCAGTTCTTCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAGAAGTCGGGTTG
TTGTTGACCTTTCTGAGATAAGAGGGCTAATGAGAAGTTACTAAAGAGTTTGACAAAGCCTAAG
GAATGTTTACTCCTGGACACAGGGTGTTAGAAACCCTGTAGTTTTGGAAGAATTTACGGTATTT
TTTTTTTCAGATGACGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTTTTTTTTTAAGCC
ATTTTGGATTTTCATGGTGAAAAATTAGTATCAGGCAGGTATTTTCTGTACCTTTGTAGTACTC
CTCCAAAGGCTAGGTGTGGTTGAGAAGAGTCAGGCGCGCGTGGAATGGCAGGGCGCAGAACGAG
GTACGTATACCCAGCTTTGCAGGAACTCTCTTCAGACTGTTTTTTTTACTGGCCATTGACTGCT
GACATCTGGTTAACTAGGACATTGCTCAGATAAGTGTCCTCGTGTCCCATCAACAGCACTTTCA
CTTGCATATATACTATTGTGCTGCCATATAAAAGAAAAATATTGAAGATATTCTATATTTTATA
TATAGGTTTATGTATTGTTGAGGATGTCGATGCTGTGCTGTTTTGGACAAAATAAAAGAATTCT
GTTTTGAGGCTACATTCTTAACCCAATTAAGATTGTTTACAAGATCACATTTGACAACAATATA
ATGTTCTTATTCCAAAATATTTTAAGGTATTGCCAAGTTTGTTAAAAGCCGCTATTACATAGTT
TTCACAGGATGTGAGCAATAATGTGAAAGATAAGAGGTGGTAAAATGATCATCTATGACTCAAA
ACTTAGAGGAGCGATTGTTAAGACTAAGATCTAAAAACTTTGCTACTCAGATGATAAAATTTAT
ATGATACTCTAGATTGGGATATACTTTTTTATCTGCTGCCATTAAAGCCTCTTTGATCTGAAGT
ATTCATGAATCAATAAATAATGAACTTATGTGTAATTTTTTTTTTTCCCGGAACTAGGGACCGA
ACCCAGGCCCTTGCACTTGCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCCAGCCCCGTAAT
TTTTTATATAGAAAGTAGCCCCAGCATTTATCATTGTGGTAGCCCCTGATGGGGTTAGAAGATA
AAAACTACATATGTTTTTTTGTTTGACTTTGGATATTTGTAACAGGATCATAGGTAGCCCAGGT
TGGTCCAGAACTCATGATCCTATTGCCTCAGTTCCCCCACAATGCTTGTTAACATTACATATCA
TAGACACATCACCACATCCAGATCAAGCTATAGTCTTAGTCAAACACATGATCTGACTTTTACC
CCAGTGCCAGACCTTACTTACTTACACTTTATGTTTTAGTAATTTGTCTCTTTAAAATTTATTA
ATTCTGCAATTTAATTTCTATCTCTGTCCTTTTTTCTTCTTAATACTGAGAGTTGAACCCAGGA
CTTTATATATTATGAGCATGTGCTCTATCACTAGATCCAACCCCAACCCGTATTTCTAGTTTTT
TACCTGACTCATTTGCTCCCAAGCATAAGTGTGTGACCTTCAGAAAAGTCAACTAAAAGAGTCA
GTAATTTTTATTTTATTATCATATGATCTTTGAAAACTGTGCCTACTAATACATAAATCCTAAA
ACTCATTAGAATCCTATTTTAGTAAGGTAAATGTTTTTGGTTCTAAACTGGGTTTTTATTTTGT
TAAGAGCTAGAAAAAGGGGAAAGGAAGAAAGAAATAAGAGTAAATCAGAGATGAATTGATTTGA
AGAATTCTTTTGAGATTTTTGGTGAAAGTGTTTCAGTATGCCCTCTCCTAGGAATTCTGAATTA
GGACAGCCCTGCTAGCTTCCCTGGGAAGGACGTGCCTCACTGTGGATTTTCATTACTAGTGACA
AATCTTGGAGCCAACCTTAATGAGAAATTCCAATATACTATGAATGCACAAATGGTTAGATGCC
TACTGCCCAAATCTTTTTGATAAAGTTACCCGACCAGTGTTTTTTTTTTTTTTTTGGTTCTTTT
TTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCT
AAATCCCCAGCCCCCGACCAGTGTTTAATATAAAATGATACAAAGGCCTTTTTCTGTTCCAATA
TGACTCTACATTTTTTGAGGACATTTTGTTTATGGGTCTATTATAGGAAATACAACTGCAAGAG
ATAATTGTATATATAGTAATACTTAAAGTTTATTTAAAGTTGATTTAAGAGGGGAATGCCTAGA
TGTATACTTTTCACCAGAACATATGGAAAACATTGTGAAGAGATGAAAGCCAGTTAATGTGATC
CCATCATAGAAATCACCAGGGGAACTAAACAGAGAAGCAGTCTTGTTTAGAATAAATATTTAAA
GGTAGCTATCTTTCGTAAGGCCTACGAGGGTAACTTTGTGATATTTAAAGGGCTTACATTTTAG
AATGCTAGATAAGTTACTTTTTAAAAATCTAAGCATTTTATATAAGAAAAGCTCTGTTTTCAAT
TTTTTTCCAACTACCAAATAGATAGGATGTGCTTTAGAGGTAAAGTCTTCACCGTGTTGGAGGC
GGTAGCCCCTCCTGTCAGTCTTTGCATTTCCAAACTCCAGCTTCAGAGGGTCACGTCAGGACGC
CACTGACTCAGAAACAGAAAGTTAACAGGACACTTTACCTTGTGCATTTAAATTTTCTAAGAAA
TGGATATTGATAACGTTATTATCCAAAAATATGTGAGCTTCTCTTAATTGGCCATTTTAAACAA
TCCTAATTTTTATTTTGAGTCTAATTTCAAGTTTAACCACAGTTCATTATTACTAGGTTTTATT
TTGAGTTTTTCAGGGGTGGAGTTTAATTTTTTTTTTTAAGTTCACAATTTTGTTAAGACAGAAT
GTACTAAAATGTTTAAGTTGCTTCATTTCAGTCTTATGTTTGAACATATTAAGTCCCAATAAAT
AGGATCCGTGTTAAGATACATTCCCTTTGTTATTAAAAACAAACAGAAAATACTTGTTAAAATG
TTTTACTAAATAGAGTGGAGGAGTAAGGGCCTCTGGTTCACTGAGTCATTGGTTCTCCAGTTGC
CTTCTAACTACGGAGCCAGGCTCTCCTGTTTTAAAACTGATCCCCATTCCTTTAGAAGCTATGT
TAAGTCTTTCACTCCTTGAAAAAAGGCTCTCCTTTCATTTGTCTAATTAATAGAAGGCACTTGC
ATGGTGAGTGTCTGTTTTCAGATTAGGCGTTAGTCTGTTAGCTTTTCTAAGGTACATGACCATA
CAGTGTTATGCAGAGGGGATCCTCTAGCAGGATCTCAGACACTGTTTTCTTATGATGGCAAATG
AGCAGTCCTCAATTCTAACTCGAGAGATTTTGGTTTGTAGACCTAATGACCAGGCGAATTAGAA
ACTTCCATTGTACTGCATCACTCATCTGCCCAAAGGGCCTTCAAACTGAAGTATACACCTACAT
GAAGGAATGATGTGAGTTCTTAACTAGGAGTGGGGGAAAAGAACTAGGAAAGCTCACATAATGG
AGCAGACAGCCCAAAGGTAGGGGAGAAAGATAGGTTTTCACTGTAAACGTTGACATCAGACGCC
TTTTTATATTTCCATAGTTACTAAGAGAACATATAGAAACCAGAAGGCAGTGGAACAAAAGTGA
GGGAGTAGAGAGATGTTATTGTTGTAGTAAATACAGCTATGAGGAATATTTATAACTAAATACA
TGTTTTAAATAAGATCAAAATTAAGATTTCTTATTTTGCTTATACTAGTATTTATCCACTCTTG
TTTTTGACAGAATGTGGTGACGTGGGATAATTTTTACGTGAAAAATCTTCAGCAAAACAAATTT
ACCAAAATAGCAATGGGTCAGCTAAACACTGGAGTGGCATTAAGCCAGTCCGCAAGCCGGTTAA
GAAGTAGGCTGTAATGTTTCACTCCGGAATGCATAACTTGAGATGTTTGCTGCAACCTAGAAAC
ATGAACTGTGTAGAACAGGGAATGCTGCTGGGCACTACCAGGAGTTACTGAAGTGATGAGTGAG
ATGCTTTCCCATATCGTAATTCTGGTTTATAATAGAAGCGATAGTTCCATGGTTTTGGAAGTAG
TCACTGTAGATTCCAGACAGTCCAGTTGGAGCCTTGGCTTTGGCAGTGTCTGAACATGTTGCTT
TAACTGCTCCTTCAACTTTAGCAGTGCTCCCTGAGTGAAACCCAGGCCGGTTCCAGCAGACACC
GGGCTTCCTGTGGACATAACAGTTTACAAAAACTTAGGAGTTCAGACCCTGATTGAGAAACATT
AAAATTAATGTTTTTATTAAAAGTATAAGAGAAAATTAAGTTTTTTTAAGTGCCTAATTTATAA
AGTTAAATTCTTTATTTCTAAGTTATCAAGCTTTGCTAAGCCTAAAAACCCTGGGCTCAGTTGT
GATGATTTACTAGTAAAGTCACCAGTAATCATTTGAGGAGCTATAGTGTCATGACTTTTACTAA
ATTCCTTGTTTTCTCAAATGGCAGACTGACTATACCTAGAGCTTGAAAAGTCACCCTGTGAGTG
AGTTCATTACCAAAGCCCGTCACCTGCTGAGTAGTCAGCGCTGTCTGCACAGGAGGGAGTAGTG
TGGCTTCAAGATGGCAGCATTGTCCGCAGTGGTGTTTTCCAGAGAGCCTTTTCTGTGAGTAGTG
TGTGCGTGCCCTCTGAGCTTGTCCTGTTAGGTAGCCGTTCTCCGGTTGACAGCTGATATGAAGG
TCTTTGGCACTGAGAATGCAGTTTTGAAAGTTGCACTGCTTTTCTGCCCCCTAGAGTGAGTGGC
ATTGGATATTTAGAAGTGAGGCCATAAACTTGTTACTTTGTTTATACAAAATGATGGCTTCCGA
TGCTTATGTATGGAAGTATTGCTTAAAGAACAGCCTCTGATAAGGTAAAATCTGGTTTTGACTC
AAGTTCTAATGATGTATTTAGTTTATTGATACTGGTGTCTCCTGTTGCATCAGCTAGATATTGC
CTGCCTCTTTGTTAAGGCACCCTGTGGCACCTTACGTTCAACTTGAAGGATGGTATGTGGCCTC
TTTGTGCCTCTACTGTCTTTTCAAAAGCCATTTTATAAAAATCTTAGGTATTTTAATATTTAAA
TATATATATTTGTGAAAGATACTTTTAGAACGAATTTTTTTTAACTTTAAAGTTCCTGTATTCC
CATTTTTAAGAGTAAACTAAAGATTTTCCAGGCTTAGGAGTATCTTTTTTCAGAACCGTGATAA
GAAAGTCAGATTGAGGTAATAAACCAGAGAGTTTGATGATAGGGAAAAAGATATCTGGTGAGGG
GAGACAGATTTAAAGGTGAAAACAATTACTTTGATGTAACAAATTAACTTCTTAAATAAAGTTT
TGTGGTTTTGCTCCTGTGATTTCGTATTTGCTGCTATAGTAGCTCACTATTTTATAGGGCTAAT
ATATAAATCTGGCCCCATTTAAAACTGAGGTCCTTTCTAATCCAAACAGCCTAGAAAGAGACTG
CAGCACAGTCTGCCAGCGGTGGCCAGTGTCCATATAGCTGATGCATGCTTTAATGTTTGCCTGT
AGCTGGCAGCACGGAGGTCAGGGAAGCTTCCTACCCTGCCAGACAGAGCATTATGATTCTTGGG
GGACTGGCATCTGGGAGACAAGACAGGCCAAAGAGGGAACCGCTGAGGAGAGCGTGTGAATGCA
GTTGCATGTTCCCATGTTCTCCTATAGCAGTCCTACTCTCCAGCTGCGCCAGTCCCCATGTCAC
CAGCTCTGTACCAGTTGTCATCTCATTCAAGTGTGGCTTTACTTGGTGACAGTGGCCATAGCTA
AATTACTTAGCATGTTTGACTTTCTACAATAACAAAAATGGTCTTAAATTTTTGTTTTGATTTC
CTAAAAAAAATGTACACAGTGTCATAACTTCACGTTTTATAAACTAGTATCTGGCTATTAGTAT
TTTACAGAAACCATGGTTCTTGGTGACTACATATATATATATATATATTTTTGTGACCTTTTTG
TAAACTAAGTGCCGTTTCAACGTTACAATCATTTTTAGAGTTATTGTAATCAATGTGAATATCA
TGTTTTTTCAAATCTGTTCTGAGCCTAGTGTTTGCTTTGTGAAAAATATGTGTATTGTATATAT
TCTGTATAGTTATACTGTATTGAAATATTAGCTTGTTTGATATGAGAAAAAGTATGTATTGAGT
ACCTTTTTGCTAGCCTGATTGCTTAATCTTTTTTAAAAAGGTTTAATTTTTTTTTTTTAATCTT
TAAACTGGCCTTTATTAATGGTCACAAATAAAGTTGCAGTTAGAAGGGATGGACAGGGAAAATT
TAGTCTTGAGTGTCTTTGGATAGAAACATGAGACTAAGATTTGTTTCGGGTTTTTTGTTTGTTT
TTGTTTTTGTTTTTTTTTTCTCATTAAAATACCTTACTGATGTTTTATGAAA

hide sequence

RefSeq Acc Id:

XM_006242769 ⟹ XP_006242831

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI
Rnor_6.0	8	32,165,388 - 32,223,341 (+)	NCBI
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI

Sequence:

show sequence

AGTGCCCCCAAACAGGCTGGAGTGAAACGAGCGGCTACGGCGGCGCCGGCTCGCACGCGCGCTG
CGGCGGCTCCCTCCCAGCCTCTCCTCCTCCTCTCCCCTCAGTCCCTTTCCCCTTCCCCACCCCG
CCCCGCCGGGCCAGCGCGAGCCGTCGCCCGCCCTCGGCAAACCGCCCCCAACCGCCGCCCGCGC
GCAGCGGGCTGGGCCCCTCGCTCCTCCCCTCAGGCCCACGGGCGCCGGGCGCTCTCCTCCTCGC
GCCTCGCACTCTCGCACTCTCGCACCTCGCGTGCACGCGGGTGAGCGGCGCCGCCATGCGCGCC
CAGTCCCAGGCTGCACACTGGCCTAGGCGCGGCGGCCCGAGATAGGGTCCCCTGAGCCTCCCGG
GGGAGGAGAGGAGCCAGCCGCGCGCTCCGCCCCCTCCCCCCGGGTTGCCGCCGCTACCGCCACC
GCCACCTCGCCGCCCCAGCCTGGCGGGGAAGAGGAGGAGCAGTTGCAGGCCTCCGGGCCCCCGC
ACCGCCGCCCGCAGGGTAATTCTGATTCATTGCATCCTTGAAGAGCATCAATAGAAGAGGGGGA
AAAAAGATGGGTGTGAAAACATTTACTCACAGCTCCTCTTCCCACAGCCAGGAAATGCTGGGAA
AACTAAATATGCTACGAAATGACGGACATTTTTGTGATATCACTATTCGTGTCCAGGACAGAAT
CTTCCGGGCTCACAAGGTGGTACTAGCAGCTTGCAGTGATTTCTTTCGAACCAAACTTGTGGGC
CAAACAGAGGATGAGAACAAAAATGTGTTGGATCTGCATCATGTTACAGTGACTGGCTTTATAC
CTCTGCTGGAATACGCTTACACAGCCACTCTGTCCATTAACACGGAAAATATTATTGATGTTCT
AGCAGCAGCCAGCTATATGCAAATGTTTAGTGTTGCTAGTACGTGCTCAGAGTTCATGAAATCA
AGTATTTTGTGGAATACACCTAATAGCCAACCAGAAAAGGGTCTAGATGCTGGACAAGAAAATA
GTTCCAACTGCAATTTTACTTCTCGAGATGGAAGCATTTCTCCAGTGTCTTCCGAGTGCAGTGC
TGTGGAAAGGACCATTCCTGTCTGCCGAGAGTCCCGGAGAAAACGCAAAAGCTACATTGTTATG
TCTCCTGAGAGCCCTGTAAAATGTAGCACACAAACAAATTCCCCCCAGGTACTGAATTCTTCAG
CTTCCTATGCAGAAAATAGAAATCAGCCAGTTGATTCTTCTTTAGCGTTTCCATGGACTTTCCC
TTTTGGAATTGATAGGAGGATTCAGCCTGAGAAAGCAAAGCAGGCAGAAAATACCCGGACTTTA
GAGTTGCCTGGCCCGTCCGAGGCAGGTAGAAGGATGGCTGACTATGTGACTTGTGAGAGCACAA
AAACTACCTTGCCTCTAGGTACAGAAGAAGACGTCCGGGTCAAAGTAGAAAGATTAAGTGATGA
GGAGGTTCATGAGGAAGTGTCCCAGCCCGTTAGTGCATCTCAGAGCTCACTGAGTGATCAGCAG
ACGGTGCCTGGAAGTGAACCAGTTCAAGAGGACCTTCTGATTAGTCCACAGTCTTCCTCTATAG
GCTCAGTGGATGAAGGAGTCACTGAAGGATTGCCTACACTTCAGAGCACTTCCAGCACCAATGC
TCATGCAGATGAGGATGACAGTACAGAACGACCAAGTCCAAATGGTCCAGACAGACCTTTTCAA
TGTCCAACCTGTGGGGTTCGCTTCACCCGTATTCAGAATCTAAAACAGCACATGCTTATCCACT
CAGGAATTAAACCATTTCAGTGTGACTGCTGTGGAAAAAAGTTTACCAGGGCTTACTCGCTAAA
GATGCATCGCCTAAAGCACGAAGGTAAACGCTGTTTCCGGTGCCAGATATGTAGTGCCACTTTC
ACTTCCTTCGGGGAGTATAAACACCATATGAGGGTTTCCCGGCACATTATCCGCAAGCCTCGGA
TTTACGAGTGCAAAACATGTGGCGCCATGTTCACCAACTCTGGAAATTTAATCGTGCACCTGAG
GAGTCTGAACCATGAAGCATCAGAGCTAGCAAACTACTTCCAGAGCAGTGATTTCTTAGTACCG
GACTACTTAAGCCAGGAGCAAGAAGAGGCCCTTGTTCAGTATGATCTTGGAGAGCACACTTCTG
AAAGCAGCTCTTCTGTTCAAATGCCTGTGATTTCACAGGTCTCCTCAACCCACAACTGTGAAAG
CACTTTTCCCCTGGGGTCTCTTGGTGGGCTTGCAGAAAAGGAGGAGGACCTGCAAGAGCAGCCA
AAGACCAGTGCTCACGATGATGCTCCCCGAGATGACCCCCCCAAGGCAGAGCTGTCTTCTATAA
CTATTGAGTGATTCTGTGATTGGCCTGGGTTTTGGGGTTTTTTTGTTTTGTTTTGTTTGTTTGT
TTGTTTGTTTGTTTTGGAAAGTGCCTGTGCTTGGTCTCATATGTTTAAATTTAATTTAATTTTT
TAAAAAGGGGTTCCCTTTGTAAGCTCTGAAACTAGAGGGTTCTTTGTTTTGTTTTGTTTTTTCA
TAGCTTTAGTATGTATACAATAAGGTAACATTGAAACAGAACATAAACTTTAAGAGTAAGGAAA
AGCAGCTGACTTAGAACATGGCAGTTCTTCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAG
AAGTCGGGTTGTTGTTGACCTTTCTGAGATAAGAGGGCTAATGAGAAGTTACTAAAGAGTTTGA
CAAAGCCTAAGGAATGTTTACTCCTGGACACAGGGTGTTAGAAACCCTGTAGTTTTGGAAGAAT
TTACGGTATTTTTTTTTTCAGATGACGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTTT
TTTTTTAAGCCATTTTGGATTTTCATGGTGAAAAATTAGTATCAGGCAGGTATTTTCTGTACCT
TTGTAGTACTCCTCCAAAGGCTAGGTGTGGTTGAGAAGAGTCAGGCGCGCGTGGAATGGCAGGG
CGCAGAACGAGGTACGTATACCCAGCTTTGCAGGAACTCTCTTCAGACTGTTTTTTTTACTGGC
CATTGACTGCTGACATCTGGTTAACTAGGACATTGCTCAGATAAGTGTCCTCGTGTCCCATCAA
CAGCACTTTCACTTGCATATATACTATTGTGCTGCCATATAAAAGAAAAATATTGAAGATATTC
TATATTTTATATATAGGTTTATGTATTGTTGAGGATGTCGATGCTGTGCTGTTTTGGACAAAAT
AAAAGAATTCTGTTTTGAGGCTACATTCTTAACCCAATTAAGATTGTTTACAAGATCACATTTG
ACAACAATATAATGTTCTTATTCCAAAATATTTTAAGGTATTGCCAAGTTTGTTAAAAGCCGCT
ATTACATAGTTTTCACAGGATGTGAGCAATAATGTGAAAGATAAGAGGTGGTAAAATGATCATC
TATGACTCAAAACTTAGAGGAGCGATTGTTAAGACTAAGATCTAAAAACTTTGCTACTCAGATG
ATAAAATTTATATGATACTCTAGATTGGGATATACTTTTTTATCTGCTGCCATTAAAGCCTCTT
TGATCTGAAGTATTCATGAATCAATAAATAATGAACTTATGTGTAATTTTTTTTTTTCCCGGAA
CTAGGGACCGAACCCAGGCCCTTGCACTTGCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCC
AGCCCCGTAATTTTTTATATAGAAAGTAGCCCCAGCATTTATCATTGTGGTAGCCCCTGATGGG
GTTAGAAGATAAAAACTACATATGTTTTTTTGTTTGACTTTGGATATTTGTAACAGGATCATAG
GTAGCCCAGGTTGGTCCAGAACTCATGATCCTATTGCCTCAGTTCCCCCACAATGCTTGTTAAC
ATTACATATCATAGACACATCACCACATCCAGATCAAGCTATAGTCTTAGTCAAACACATGATC
TGACTTTTACCCCAGTGCCAGACCTTACTTACTTACACTTTATGTTTTAGTAATTTGTCTCTTT
AAAATTTATTAATTCTGCAATTTAATTTCTATCTCTGTCCTTTTTTCTTCTTAATACTGAGAGT
TGAACCCAGGACTTTATATATTATGAGCATGTGCTCTATCACTAGATCCAACCCCAACCCGTAT
TTCTAGTTTTTTACCTGACTCATTTGCTCCCAAGCATAAGTGTGTGACCTTCAGAAAAGTCAAC
TAAAAGAGTCAGTAATTTTTATTTTATTATCATATGATCTTTGAAAACTGTGCCTACTAATACA
TAAATCCTAAAACTCATTAGAATCCTATTTTAGTAAGGTAAATGTTTTTGGTTCTAAACTGGGT
TTTTATTTTGTTAAGAGCTAGAAAAAGGGGAAAGGAAGAAAGAAATAAGAGTAAATCAGAGATG
AATTGATTTGAAGAATTCTTTTGAGATTTTTGGTGAAAGTGTTTCAGTATGCCCTCTCCTAGGA
ATTCTGAATTAGGACAGCCCTGCTAGCTTCCCTGGGAAGGACGTGCCTCACTGTGGATTTTCAT
TACTAGTGACAAATCTTGGAGCCAACCTTAATGAGAAATTCCAATATACTATGAATGCACAAAT
GGTTAGATGCCTACTGCCCAAATCTTTTTGATAAAGTTACCCGACCAGTGTTTTTTTTTTTTTT
TTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCT
ACCACTGAGCTAAATCCCCAGCCCCCGACCAGTGTTTAATATAAAATGATACAAAGGCCTTTTT
CTGTTCCAATATGACTCTACATTTTTTGAGGACATTTTGTTTATGGGTCTATTATAGGAAATAC
AACTGCAAGAGATAATTGTATATATAGTAATACTTAAAGTTTATTTAAAGTTGATTTAAGAGGG
GAATGCCTAGATGTATACTTTTCACCAGAACATATGGAAAACATTGTGAAGAGATGAAAGCCAG
TTAATGTGATCCCATCATAGAAATCACCAGGGGAACTAAACAGAGAAGCAGTCTTGTTTAGAAT
AAATATTTAAAGGTAGCTATCTTTCGTAAGGCCTACGAGGGTAACTTTGTGATATTTAAAGGGC
TTACATTTTAGAATGCTAGATAAGTTACTTTTTAAAAATCTAAGCATTTTATATAAGAAAAGCT
CTGTTTTCAATTTTTTTCCAACTACCAAATAGATAGGATGTGCTTTAGAGGTAAAGTCTTCACC
GTGTTGGAGGCGGTAGCCCCTCCTGTCAGTCTTTGCATTTCCAAACTCCAGCTTCAGAGGGTCA
CGTCAGGACGCCACTGACTCAGAAACAGAAAGTTAACAGGACACTTTACCTTGTGCATTTAAAT
TTTCTAAGAAATGGATATTGATAACGTTATTATCCAAAAATATGTGAGCTTCTCTTAATTGGCC
ATTTTAAACAATCCTAATTTTTATTTTGAGTCTAATTTCAAGTTTAACCACAGTTCATTATTAC
TAGGTTTTATTTTGAGTTTTTCAGGGGTGGAGTTTAATTTTTTTTTTTAAGTTCACAATTTTGT
TAAGACAGAATGTACTAAAATGTTTAAGTTGCTTCATTTCAGTCTTATGTTTGAACATATTAAG
TCCCAATAAATAGGATCCGTGTTAAGATACATTCCCTTTGTTATTAAAAACAAACAGAAAATAC
TTGTTAAAATGTTTTACTAAATAGAGTGGAGGAGTAAGGGCCTCTGGTTCACTGAGTCATTGGT
TCTCCAGTTGCCTTCTAACTACGGAGCCAGGCTCTCCTGTTTTAAAACTGATCCCCATTCCTTT
AGAAGCTATGTTAAGTCTTTCACTCCTTGAAAAAAGGCTCTCCTTTCATTTGTCTAATTAATAG
AAGGCACTTGCATGGTGAGTGTCTGTTTTCAGATTAGGCGTTAGTCTGTTAGCTTTTCTAAGGT
ACATGACCATACAGTGTTATGCAGAGGGGATCCTCTAGCAGGATCTCAGACACTGTTTTCTTAT
GATGGCAAATGAGCAGTCCTCAATTCTAACTCGAGAGATTTTGGTTTGTAGACCTAATGACCAG
GCGAATTAGAAACTTCCATTGTACTGCATCACTCATCTGCCCAAAGGGCCTTCAAACTGAAGTA
TACACCTACATGAAGGAATGATGTGAGTTCTTAACTAGGAGTGGGGGAAAAGAACTAGGAAAGC
TCACATAATGGAGCAGACAGCCCAAAGGTAGGGGAGAAAGATAGGTTTTCACTGTAAACGTTGA
CATCAGACGCCTTTTTATATTTCCATAGTTACTAAGAGAACATATAGAAACCAGAAGGCAGTGG
AACAAAAGTGAGGGAGTAGAGAGATGTTATTGTTGTAGTAAATACAGCTATGAGGAATATTTAT
AACTAAATACATGTTTTAAATAAGATCAAAATTAAGATTTCTTATTTTGCTTATACTAGTATTT
ATCCACTCTTGTTTTTGACAGAATGTGGTGACGTGGGATAATTTTTACGTGAAAAATCTTCAGC
AAAACAAATTTACCAAAATAGCAATGGGTCAGCTAAACACTGGAGTGGCATTAAGCCAGTCCGC
AAGCCGGTTAAGAAGTAGGCTGTAATGTTTCACTCCGGAATGCATAACTTGAGATGTTTGCTGC
AACCTAGAAACATGAACTGTGTAGAACAGGGAATGCTGCTGGGCACTACCAGGAGTTACTGAAG
TGATGAGTGAGATGCTTTCCCATATCGTAATTCTGGTTTATAATAGAAGCGATAGTTCCATGGT
TTTGGAAGTAGTCACTGTAGATTCCAGACAGTCCAGTTGGAGCCTTGGCTTTGGCAGTGTCTGA
ACATGTTGCTTTAACTGCTCCTTCAACTTTAGCAGTGCTCCCTGAGTGAAACCCAGGCCGGTTC
CAGCAGACACCGGGCTTCCTGTGGACATAACAGTTTACAAAAACTTAGGAGTTCAGACCCTGAT
TGAGAAACATTAAAATTAATGTTTTTATTAAAAGTATAAGAGAAAATTAAGTTTTTTTAAGTGC
CTAATTTATAAAGTTAAATTCTTTATTTCTAAGTTATCAAGCTTTGCTAAGCCTAAAAACCCTG
GGCTCAGTTGTGATGATTTACTAGTAAAGTCACCAGTAATCATTTGAGGAGCTATAGTGTCATG
ACTTTTACTAAATTCCTTGTTTTCTCAAATGGCAGACTGACTATACCTAGAGCTTGAAAAGTCA
CCCTGTGAGTGAGTTCATTACCAAAGCCCGTCACCTGCTGAGTAGTCAGCGCTGTCTGCACAGG
AGGGAGTAGTGTGGCTTCAAGATGGCAGCATTGTCCGCAGTGGTGTTTTCCAGAGAGCCTTTTC
TGTGAGTAGTGTGTGCGTGCCCTCTGAGCTTGTCCTGTTAGGTAGCCGTTCTCCGGTTGACAGC
TGATATGAAGGTCTTTGGCACTGAGAATGCAGTTTTGAAAGTTGCACTGCTTTTCTGCCCCCTA
GAGTGAGTGGCATTGGATATTTAGAAGTGAGGCCATAAACTTGTTACTTTGTTTATACAAAATG
ATGGCTTCCGATGCTTATGTATGGAAGTATTGCTTAAAGAACAGCCTCTGATAAGGTAAAATCT
GGTTTTGACTCAAGTTCTAATGATGTATTTAGTTTATTGATACTGGTGTCTCCTGTTGCATCAG
CTAGATATTGCCTGCCTCTTTGTTAAGGCACCCTGTGGCACCTTACGTTCAACTTGAAGGATGG
TATGTGGCCTCTTTGTGCCTCTACTGTCTTTTCAAAAGCCATTTTATAAAAATCTTAGGTATTT
TAATATTTAAATATATATATTTGTGAAAGATACTTTTAGAACGAATTTTTTTTAACTTTAAAGT
TCCTGTATTCCCATTTTTAAGAGTAAACTAAAGATTTTCCAGGCTTAGGAGTATCTTTTTTCAG
AACCGTGATAAGAAAGTCAGATTGAGGTAATAAACCAGAGAGTTTGATGATAGGGAAAAAGATA
TCTGGTGAGGGGAGACAGATTTAAAGGTGAAAACAATTACTTTGATGTAACAAATTAACTTCTT
AAATAAAGTTTTGTGGTTTTGCTCCTGTGATTTCGTATTTGCTGCTATAGTAGCTCACTATTTT
ATAGGGCTAATATATAAATCTGGCCCCATTTAAAACTGAGGTCCTTTCTAATCCAAACAGCCTA
GAAAGAGACTGCAGCACAGTCTGCCAGCGGTGGCCAGTGTCCATATAGCTGATGCATGCTTTAA
TGTTTGCCTGTAGCTGGCAGCACGGAGGTCAGGGAAGCTTCCTACCCTGCCAGACAGAGCATTA
TGATTCTTGGGGGACTGGCATCTGGGAGACAAGACAGGCCAAAGAGGGAACCGCTGAGGAGAGC
GTGTGAATGCAGTTGCATGTTCCCATGTTCTCCTATAGCAGTCCTACTCTCCAGCTGCGCCAGT
CCCCATGTCACCAGCTCTGTACCAGTTGTCATCTCATTCAAGTGTGGCTTTACTTGGTGACAGT
GGCCATAGCTAAATTACTTAGCATGTTTGACTTTCTACAATAACAAAAATGGTCTTAAATTTTT
GTTTTGATTTCCTAAAAAAAATGTACACAGTGTCATAACTTCACGTTTTATAAACTAGTATCTG
GCTATTAGTATTTTACAGAAACCATGGTTCTTGGTGACTACATATATATATATATATATTTTTG
TGACCTTTTTGTAAACTAAGTGCCGTTTCAACGTTACAATCATTTTTAGAGTTATTGTAATCAA
TGTGAATATCATGTTTTTTCAAATCTGTTCTGAGCCTAGTGTTTGCTTTGTGAAAAATATGTGT
ATTGTATATATTCTGTATAGTTATACTGTATTGAAATATTAGCTTGTTTGATATGAGAAAAAGT
ATGTATTGAGTACCTTTTTGCTAGCCTGATTGCTTAATCTTTTTTAAAAAGGTTTAATTTTTTT
TTTTTAATCTTTAAACTGGCCTTTATTAATGGTCACAAATAAAGTTGCAGTTAGAAGGGATGGA
CAGGGAAAATTTAGTCTTGAGTGTCTTTGGATAGAAACATGAGACTAAGATTTGTTTCGGGTTT
TTTGTTTGTTTTTGTTTTTGTTTTTTTTTTCTCATTAAAATACCTTACTGATGTTTTATGAAA

hide sequence

RefSeq Acc Id:

XM_039081717 ⟹ XP_038937645

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030114	(Get FASTA)	NCBI Sequence Viewer
	XP_006242830	(Get FASTA)	NCBI Sequence Viewer
	XP_006242831	(Get FASTA)	NCBI Sequence Viewer
	XP_038937645	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04681	(Get FASTA)	NCBI Sequence Viewer
	EDL83318	(Get FASTA)	NCBI Sequence Viewer
	Q3SWU4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001030114 ⟸ NM_001034942

- UniProtKB:

Q3SWU4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQT
EDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI
LWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSP
ESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLEL
PGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTV
PGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDRLENVQYPYQLYIAPST
SSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLK
HEVIS

hide sequence

RefSeq Acc Id:

XP_006242831 ⟸ XM_006242769

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQT
EDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI
LWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSP
ESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLEL
PGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTV
PGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDSTERPSPNGPDRPFQCP
TCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLKHEGKRCFRCQICSATFTS
FGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHEASELANYFQSSDFLVPDY
LSQEQEEALVQYDLGEHTSESSSSVQMPVISQVSSTHNCESTFPLGSLGGLAEKEEDLQEQPKT
SAHDDAPRDDPPKAELSSITIE

hide sequence

RefSeq Acc Id:

XP_006242830 ⟸ XM_006242768

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQT
EDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI
LWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSP
ESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLEL
PGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTV
PGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDRLENVQYPYQLYIAPST
SSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLK
HEGKRCFRCQICSATFTSFGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHE
ASELANYFQSSDFLVPDYLSQEQEEALVQYDLGEHTSESSSSVQMPVISQVSSTHNCESTFPLG
SLGGLAEKEEDLQEQPKTSAHDDAPRDDPPKAELSSITIE

hide sequence

RefSeq Acc Id:

ENSRNOP00000007539 ⟸ ENSRNOT00000007539

RefSeq Acc Id:

ENSRNOP00000069596 ⟸ ENSRNOT00000081145

RefSeq Acc Id:	XP_038937645 ⟸ XM_039081717
- Peptide Label:	isoform X2

Protein Domains

BTB C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695823

Promoter ID:

EPDNEW_R6348

Type:

single initiation site

Name:

Zbtb44_1

Description:

zinc finger and BTB domain containing 44

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	32,165,790 - 32,165,850	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308984	AgrOrtholog
Ensembl Genes	ENSRNOG00000005578	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000007539	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000069596	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007539	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000081145	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7456912	IMAGE-MGC_LOAD
InterPro	BTB/POZ_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363035	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125242	IMAGE-MGC_LOAD
NCBI Gene	363035	ENTREZGENE
Pfam	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zbtb44	PhenoGen
PROSITE	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JVS3_RAT	UniProtKB/TrEMBL
	Q3SWU4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-03	Zbtb44	zinc finger and BTB domain containing 44	Btbd15	BTB (POZ) domain containing 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Btbd15	BTB (POZ) domain containing 15	RGD1308984	similar to RIKEN cDNA 6030404E16	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1308984	similar to RIKEN cDNA 6030404E16	RGD1308984_predicted	similar to RIKEN cDNA 6030404E16 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308984_predicted	similar to RIKEN cDNA 6030404E16 (predicted)	LOC363035_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363035_predicted	similar to RIKEN cDNA 6030404E16 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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