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Gene: Zbtb44 (zinc finger and BTB domain containing 44) Rattus norvegicus

Analyze

Symbol:

Zbtb44

Name:

zinc finger and BTB domain containing 44

RGD ID:

1308984

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZBTB44 (zinc finger and BTB domain containing 44); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BTB (POZ) domain containing 15; BTB/POZ domain-containing protein 15; Btbd15; LOC363035; MGC125242; RGD1308984; similar to RIKEN cDNA 6030404E16; zinc finger and BTB domain-containing protein 44

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	37,724,237 - 37,782,220 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	37,724,250 - 37,776,691 (+)	Ensembl				GRCr8
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	29,466,352 - 29,518,163 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	33,535,723 - 33,587,518 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	31,830,117 - 31,881,915 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	29,698,088 - 29,749,760 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	32,165,388 - 32,223,341 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	32,165,810 - 32,217,476 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	30,841,899 - 30,894,133 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	30,928,937 - 30,979,901 (+)	NCBI		Celera
RGSC_v3.1	8	30,850,442 - 30,921,405 (+)	NCBI
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

Jacobsen Syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

elemental selenium (ISO)

fenthion (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

indometacin (ISO)

isoprenaline (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methidathion (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenacetin (EXP)

phenobarbital (ISO)

phenylhydrazine (EXP)

phenylmercury acetate (ISO)

PhIP (EXP)

pinosylvin (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

pyridaben (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trans-pinosylvin (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Zbtb44
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	37,724,237 - 37,782,220 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	37,724,250 - 37,776,691 (+)	Ensembl				GRCr8
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	29,466,352 - 29,518,163 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	33,535,723 - 33,587,518 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	31,830,117 - 31,881,915 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	29,698,088 - 29,749,760 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	32,165,388 - 32,223,341 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	32,165,810 - 32,217,476 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	30,841,899 - 30,894,133 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	30,928,937 - 30,979,901 (+)	NCBI		Celera
RGSC_v3.1	8	30,850,442 - 30,921,405 (+)	NCBI
Cytogenetic Map	8	q13	NCBI

ZBTB44
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	130,226,677 - 130,314,917 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	130,226,677 - 130,314,917 (-)	Ensembl			hg38	GRCh38
GRCh37	11	130,096,572 - 130,184,812 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	129,608,335 - 129,689,817 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	127,264,450 - 127,352,483 (-)	NCBI		Celera
Cytogenetic Map	11	q24.3	NCBI
HuRef	11	126,049,248 - 126,084,496 (-)	NCBI		HuRef
CHM1_1	11	129,982,379 - 130,070,414 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	130,262,483 - 130,350,761 (-)	NCBI		T2T-CHM13v2.0

Zbtb44
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	30,941,016 - 30,987,181 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	30,941,940 - 30,987,181 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	31,029,720 - 31,075,885 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	31,030,644 - 31,075,885 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	30,838,229 - 30,883,470 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	30,780,209 - 30,819,776 (+)	NCBI		MGSCv36	mm8
Celera	9	28,289,333 - 28,335,081 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	16.56	NCBI

Zbtb44
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	31,147,147 - 31,205,226 (-)	Ensembl
ChiLan1.0	NW_004955412	31,146,620 - 31,205,226 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB44
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	130,904,391 - 130,992,454 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	132,015,072 - 132,103,110 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	125,037,645 - 125,125,711 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	128,929,819 - 129,017,533 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	128,929,826 - 128,964,790 (-)	Ensembl			panPan2	panpan1.1

ZBTB44
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	4,574,604 - 4,641,431 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	4,574,243 - 4,635,066 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	4,634,397 - 4,702,362 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	4,534,775 - 4,601,607 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	4,535,991 - 4,595,515 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	4,568,897 - 4,635,604 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	4,577,604 - 4,644,363 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	4,604,461 - 4,671,747 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zbtb44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	112,330,715 - 112,397,948 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936572	2,052,408 - 2,113,821 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936572	2,052,408 - 2,117,120 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB44
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	56,947,391 - 57,017,791 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	56,947,145 - 57,018,803 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	63,071,002 - 63,152,634 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB44
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	121,317,527 - 121,382,608 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	4,725,695 - 4,800,607 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb44
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624812	4,631,468 - 4,694,218 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zbtb44
246 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	674
Count of miRNA genes:	284
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000007539
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	28157323	30848259	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat

Markers in Region

D8Rat162

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	37,760,859 - 37,761,112 (+)	Marker Load Pipeline
mRatBN7.2	8	29,502,665 - 29,502,918 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	32,201,981 - 32,202,233	NCBI	Rnor6.0
Rnor_5.0	8	32,227,585 - 32,227,837	UniSTS	Rnor5.0
RGSC_v3.4	8	30,878,637 - 30,878,889	UniSTS	RGSC3.4
RGSC_v3.4	8	30,878,636 - 30,878,889	RGD	RGSC3.4
Celera	8	30,964,403 - 30,964,657	UniSTS
RGSC_v3.1	8	30,887,403 - 30,887,655	RGD
RH 3.4 Map	8	246.2	UniSTS
RH 3.4 Map	8	246.2	RGD
SHRSP x BN Map	8	21.82	RGD
SHRSP x BN Map	8	21.82	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH128981

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	29,517,834 - 29,518,025 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	32,217,149 - 32,217,339	NCBI	Rnor6.0
Rnor_5.0	8	32,242,753 - 32,242,943	UniSTS	Rnor5.0
RGSC_v3.4	8	30,893,805 - 30,893,995	UniSTS	RGSC3.4
Celera	8	30,979,573 - 30,979,763	UniSTS
RH 3.4 Map	8	243.6	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH142178

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	8	32,220,143 - 32,220,276	UniSTS	Rnor5.0
RGSC_v3.4	8	30,972,451 - 30,972,584	UniSTS	RGSC3.4
Celera	8	31,122,808 - 31,122,941	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007539 ⟹ ENSRNOP00000007539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	37,724,251 - 37,776,691 (+)	Ensembl
mRatBN7.2 Ensembl	8	29,489,244 - 29,518,163 (+)	Ensembl
Rnor_6.0 Ensembl	8	32,165,810 - 32,217,476 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081145 ⟹ ENSRNOP00000069596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	29,466,352 - 29,514,768 (+)	Ensembl
Rnor_6.0 Ensembl	8	32,188,617 - 32,214,469 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100746 ⟹ ENSRNOP00000084481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	37,724,250 - 37,772,925 (+)	Ensembl
mRatBN7.2 Ensembl	8	29,466,352 - 29,514,732 (+)	Ensembl

RefSeq Acc Id:

NM_001034942 ⟹ NP_001030114

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,724,688 - 37,776,356 (+)	NCBI
mRatBN7.2	8	29,466,498 - 29,518,163 (+)	NCBI
Rnor_6.0	8	32,165,810 - 32,217,477 (+)	NCBI
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI
RGSC_v3.4	8	30,841,899 - 30,894,133 (+)	RGD
Celera	8	30,928,937 - 30,979,901 (+)	RGD

Sequence:

show sequence

CCCGGGTTGCCGCCGCTACCGCCACCGCCACCTCGCCGCCCCAGCCTGGCGGGGAAGAGGAGGA
GCAGTTGCAGGCCTCCGGGCCCCCGCACCGCCGCCCGCAGGGTAATTCTGATTCATTGCATCCT
TGAAGAGCATCAATAGAAGAGGGGGAAAAAAGATGGGTGTGAAAACATTTACTCACAGCTCCTC
TTCCCACAGCCAGGAAATGCTGGGAAAACTAAATATGCTACGAAATGACGGACATTTTTGTGAT
ATCACTATTCGTGTCCAGGACAGAATCTTCCGGGCTCACAAGGTGGTACTAGCAGCTTGCAGTG
ATTTCTTTCGAACCAAACTTGTGGGCCAAACAGAGGATGAGAACAAAAATGTGTTGGATCTGCA
TCATGTTACAGTGACTGGCTTTATACCTCTGCTGGAATACGCTTACACAGCCACTCTGTCCATT
AACACGGAAAATATTATTGATGTTCTAGCAGCAGCCAGCTATATGCAAATGTTTAGTGTTGCTA
GTACGTGCTCAGAGTTCATGAAATCAAGTATTTTGTGGAATACACCTAATAGCCAACCAGAAAA
GGGTCTAGATGCTGGACAAGAAAATAGTTCCAACTGCAATTTTACTTCTCGAGATGGAAGCATT
TCTCCAGTGTCTTCCGAGTGCAGTGCTGTGGAAAGGACCATTCCTGTCTGCCGAGAGTCCCGGA
GAAAACGCAAAAGCTACATTGTTATGTCTCCTGAGAGCCCTGTAAAATGTAGCACACAAACAAA
TTCCCCCCAGGTACTGAATTCTTCAGCTTCCTATGCAGAAAATAGAAATCAGCCAGTTGATTCT
TCTTTAGCGTTTCCATGGACTTTCCCTTTTGGAATTGATAGGAGGATTCAGCCTGAGAAAGCAA
AGCAGGCAGAAAATACCCGGACTTTAGAGTTGCCTGGCCCGTCCGAGGCAGGTAGAAGGATGGC
TGACTATGTGACTTGTGAGAGCACAAAAACTACCTTGCCTCTAGGTACAGAAGAAGACGTCCGG
GTCAAAGTAGAAAGATTAAGTGATGAGGAGGTTCATGAGGAAGTGTCCCAGCCCGTTAGTGCAT
CTCAGAGCTCACTGAGTGATCAGCAGACGGTGCCTGGAAGTGAACCAGTTCAAGAGGACCTTCT
GATTAGTCCACAGTCTTCCTCTATAGGCTCAGTGGATGAAGGAGTCACTGAAGGATTGCCTACA
CTTCAGAGCACTTCCAGCACCAATGCTCATGCAGATGAGGATGACAGATTGGAAAATGTTCAGT
ATCCCTATCAACTGTACATTGCTCCTTCTACCAGCAGTACAGAACGACCAAGTCCAAATGGTCC
AGACAGACCTTTTCAATGTCCAACCTGTGGGGTTCGCTTCACCCGTATTCAGAATCTAAAACAG
CACATGCTTATCCACTCAGGAATTAAACCATTTCAGTGTGACTGCTGTGGAAAAAAGTTTACCA
GGGCTTACTCGCTAAAGATGCATCGCCTAAAGCACGAAGTGATTTCTTAGTACCGGACTACTTA
AGCCAGGAGCAAGAAGAGGCCCTTGTTCAGTATGATCTTGGAGAGCACACTTCTGAAAGCAGCT
CTTCTGTTCAAATGCCTGTGATTTCACAGGTCTCCTCAACCCACAACTGTGAAAGCACTTTTCC
CCTGGGGTCTCTTGGTGGGCTTGCAGAAAAGGAGGAGGACCTGCAAGAGCAGCCAAAGACCAGT
GCTCACGATGATGCTCCCCGAGATGACCCCCCCAAGGCAGAGCTGTCTTCTATAACTATTGAGT
GATTCTGTGATTGGCCTGGGTTTTGGGGTTTTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTT
TGTTTTGGAAAGTGCCTGTGCTTGGTCTCATATGTTTAAATTTAATTTAATTTTTTAAAAAGGG
GTTCCCTTTGTAAGCTCTGAAACTAGAGGGTTCTTTGTTTTGTTTTGTTTTTTCATAGCTTTAG
TATGTATACAATAAGGTAACATTGAAACAGAACATAAACTTTAAGAGTAAGGAAAAGCAGCTGA
CTTAGAACATGGCAGTTCTTCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAGAAGTCGGGT
TGTTGTTGACCTTTCTGAGATAAGAGGGCTAATGAGAAGTTACTAAAGAGTTTGACAAAGCCTA
AGGAATGTTTACTCCTGGACACAGGGTGTTAGAAACCCTGTAGTTTTGGAAGAATTTACGGTAT
TTTTTTTTCAGATGACGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTTTTTTTTTAAGC
CATTTTGGATTTTCATGGTGAAAAATTAGTATCAGGCAGGTATTTTCTGTACCTTTGTAGTACT
CCTCCAAAGGCTAGGTGTGGTTGAGAAGAGTCAGGCGCGCGTGGAATGGCAGGGCGCAGAACGA
GGTACGTATACCCAGCTTTGCAGGAACTCTCTTCAGACTGTTTTTTTTACTGGCCATTGACTGC
TGACATCTGGTTAACTAGGACATTGCTCAGATAAGTGTCCTCGTGTCCCATCAACAGCACTTTC
ACTTGCATATATACTATTGTGCTGCCATATAAAAGAAAAATATTGAAGATATTCTATATTTTAT
ATATAGGTTTATGTATTGTTGAGGATGTCGATGCTGTGCTGTTTTGGACAAAATAAAAGAATTC
TGTTTTGAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242768 ⟹ XP_006242830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,724,242 - 37,782,220 (+)	NCBI
mRatBN7.2	8	29,466,057 - 29,524,027 (+)	NCBI
Rnor_6.0	8	32,165,389 - 32,223,341 (+)	NCBI
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI

Sequence:

show sequence

GTGCCCCCAAACAGGCTGGAGTGAAACGAGCGGCTACGGCGGCGCCGGCTCGCACGCGCGCTGC
GGCGGCTCCCTCCCAGCCTCTCCTCCTCCTCTCCCCTCAGTCCCTTTCCCCTTCCCCACCCCGC
CCCGCCGGGCCAGCGCGAGCCGTCGCCCGCCCTCGGCAAACCGCCCCCAACCGCCGCCCGCGCG
CAGCGGGCTGGGCCCCTCGCTCCTCCCCTCAGGCCCACGGGCGCCGGGCGCTCTCCTCCTCGCG
CCTCGCACTCTCGCACTCTCGCACCTCGCGTGCACGCGGGTGAGCGGCGCCGCCATGCGCGCCC
AGTCCCAGGCTGCACACTGGCCTAGGCGCGGCGGCCCGAGATAGGGTCCCCTGAGCCTCCCGGG
GGAGGAGAGGAGCCAGCCGCGCGCTCCGCCCCCTCCCCCCGGGTTGCCGCCGCTACCGCCACCG
CCACCTCGCCGCCCCAGCCTGGCGGGGAAGAGGAGGAGCAGTTGCAGGCCTCCGGGCCCCCGCA
CCGCCGCCCGCAGGGTAATTCTGATTCATTGCATCCTTGAAGAGCATCAATAGAAGAGGGGGAA
AAAAGATGGGTGTGAAAACATTTACTCACAGCTCCTCTTCCCACAGCCAGGAAATGCTGGGAAA
ACTAAATATGCTACGAAATGACGGACATTTTTGTGATATCACTATTCGTGTCCAGGACAGAATC
TTCCGGGCTCACAAGGTGGTACTAGCAGCTTGCAGTGATTTCTTTCGAACCAAACTTGTGGGCC
AAACAGAGGATGAGAACAAAAATGTGTTGGATCTGCATCATGTTACAGTGACTGGCTTTATACC
TCTGCTGGAATACGCTTACACAGCCACTCTGTCCATTAACACGGAAAATATTATTGATGTTCTA
GCAGCAGCCAGCTATATGCAAATGTTTAGTGTTGCTAGTACGTGCTCAGAGTTCATGAAATCAA
GTATTTTGTGGAATACACCTAATAGCCAACCAGAAAAGGGTCTAGATGCTGGACAAGAAAATAG
TTCCAACTGCAATTTTACTTCTCGAGATGGAAGCATTTCTCCAGTGTCTTCCGAGTGCAGTGCT
GTGGAAAGGACCATTCCTGTCTGCCGAGAGTCCCGGAGAAAACGCAAAAGCTACATTGTTATGT
CTCCTGAGAGCCCTGTAAAATGTAGCACACAAACAAATTCCCCCCAGGTACTGAATTCTTCAGC
TTCCTATGCAGAAAATAGAAATCAGCCAGTTGATTCTTCTTTAGCGTTTCCATGGACTTTCCCT
TTTGGAATTGATAGGAGGATTCAGCCTGAGAAAGCAAAGCAGGCAGAAAATACCCGGACTTTAG
AGTTGCCTGGCCCGTCCGAGGCAGGTAGAAGGATGGCTGACTATGTGACTTGTGAGAGCACAAA
AACTACCTTGCCTCTAGGTACAGAAGAAGACGTCCGGGTCAAAGTAGAAAGATTAAGTGATGAG
GAGGTTCATGAGGAAGTGTCCCAGCCCGTTAGTGCATCTCAGAGCTCACTGAGTGATCAGCAGA
CGGTGCCTGGAAGTGAACCAGTTCAAGAGGACCTTCTGATTAGTCCACAGTCTTCCTCTATAGG
CTCAGTGGATGAAGGAGTCACTGAAGGATTGCCTACACTTCAGAGCACTTCCAGCACCAATGCT
CATGCAGATGAGGATGACAGATTGGAAAATGTTCAGTATCCCTATCAACTGTACATTGCTCCTT
CTACCAGCAGTACAGAACGACCAAGTCCAAATGGTCCAGACAGACCTTTTCAATGTCCAACCTG
TGGGGTTCGCTTCACCCGTATTCAGAATCTAAAACAGCACATGCTTATCCACTCAGGAATTAAA
CCATTTCAGTGTGACTGCTGTGGAAAAAAGTTTACCAGGGCTTACTCGCTAAAGATGCATCGCC
TAAAGCACGAAGGTAAACGCTGTTTCCGGTGCCAGATATGTAGTGCCACTTTCACTTCCTTCGG
GGAGTATAAACACCATATGAGGGTTTCCCGGCACATTATCCGCAAGCCTCGGATTTACGAGTGC
AAAACATGTGGCGCCATGTTCACCAACTCTGGAAATTTAATCGTGCACCTGAGGAGTCTGAACC
ATGAAGCATCAGAGCTAGCAAACTACTTCCAGAGCAGTGATTTCTTAGTACCGGACTACTTAAG
CCAGGAGCAAGAAGAGGCCCTTGTTCAGTATGATCTTGGAGAGCACACTTCTGAAAGCAGCTCT
TCTGTTCAAATGCCTGTGATTTCACAGGTCTCCTCAACCCACAACTGTGAAAGCACTTTTCCCC
TGGGGTCTCTTGGTGGGCTTGCAGAAAAGGAGGAGGACCTGCAAGAGCAGCCAAAGACCAGTGC
TCACGATGATGCTCCCCGAGATGACCCCCCCAAGGCAGAGCTGTCTTCTATAACTATTGAGTGA
TTCTGTGATTGGCCTGGGTTTTGGGGTTTTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTG
TTTTGGAAAGTGCCTGTGCTTGGTCTCATATGTTTAAATTTAATTTAATTTTTTAAAAAGGGGT
TCCCTTTGTAAGCTCTGAAACTAGAGGGTTCTTTGTTTTGTTTTGTTTTTTCATAGCTTTAGTA
TGTATACAATAAGGTAACATTGAAACAGAACATAAACTTTAAGAGTAAGGAAAAGCAGCTGACT
TAGAACATGGCAGTTCTTCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAGAAGTCGGGTTG
TTGTTGACCTTTCTGAGATAAGAGGGCTAATGAGAAGTTACTAAAGAGTTTGACAAAGCCTAAG
GAATGTTTACTCCTGGACACAGGGTGTTAGAAACCCTGTAGTTTTGGAAGAATTTACGGTATTT
TTTTTTTCAGATGACGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTTTTTTTTTAAGCC
ATTTTGGATTTTCATGGTGAAAAATTAGTATCAGGCAGGTATTTTCTGTACCTTTGTAGTACTC
CTCCAAAGGCTAGGTGTGGTTGAGAAGAGTCAGGCGCGCGTGGAATGGCAGGGCGCAGAACGAG
GTACGTATACCCAGCTTTGCAGGAACTCTCTTCAGACTGTTTTTTTTACTGGCCATTGACTGCT
GACATCTGGTTAACTAGGACATTGCTCAGATAAGTGTCCTCGTGTCCCATCAACAGCACTTTCA
CTTGCATATATACTATTGTGCTGCCATATAAAAGAAAAATATTGAAGATATTCTATATTTTATA
TATAGGTTTATGTATTGTTGAGGATGTCGATGCTGTGCTGTTTTGGACAAAATAAAAGAATTCT
GTTTTGAGGCTACATTCTTAACCCAATTAAGATTGTTTACAAGATCACATTTGACAACAATATA
ATGTTCTTATTCCAAAATATTTTAAGGTATTGCCAAGTTTGTTAAAAGCCGCTATTACATAGTT
TTCACAGGATGTGAGCAATAATGTGAAAGATAAGAGGTGGTAAAATGATCATCTATGACTCAAA
ACTTAGAGGAGCGATTGTTAAGACTAAGATCTAAAAACTTTGCTACTCAGATGATAAAATTTAT
ATGATACTCTAGATTGGGATATACTTTTTTATCTGCTGCCATTAAAGCCTCTTTGATCTGAAGT
ATTCATGAATCAATAAATAATGAACTTATGTGTAATTTTTTTTTTTCCCGGAACTAGGGACCGA
ACCCAGGCCCTTGCACTTGCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCCAGCCCCGTAAT
TTTTTATATAGAAAGTAGCCCCAGCATTTATCATTGTGGTAGCCCCTGATGGGGTTAGAAGATA
AAAACTACATATGTTTTTTTGTTTGACTTTGGATATTTGTAACAGGATCATAGGTAGCCCAGGT
TGGTCCAGAACTCATGATCCTATTGCCTCAGTTCCCCCACAATGCTTGTTAACATTACATATCA
TAGACACATCACCACATCCAGATCAAGCTATAGTCTTAGTCAAACACATGATCTGACTTTTACC
CCAGTGCCAGACCTTACTTACTTACACTTTATGTTTTAGTAATTTGTCTCTTTAAAATTTATTA
ATTCTGCAATTTAATTTCTATCTCTGTCCTTTTTTCTTCTTAATACTGAGAGTTGAACCCAGGA
CTTTATATATTATGAGCATGTGCTCTATCACTAGATCCAACCCCAACCCGTATTTCTAGTTTTT
TACCTGACTCATTTGCTCCCAAGCATAAGTGTGTGACCTTCAGAAAAGTCAACTAAAAGAGTCA
GTAATTTTTATTTTATTATCATATGATCTTTGAAAACTGTGCCTACTAATACATAAATCCTAAA
ACTCATTAGAATCCTATTTTAGTAAGGTAAATGTTTTTGGTTCTAAACTGGGTTTTTATTTTGT
TAAGAGCTAGAAAAAGGGGAAAGGAAGAAAGAAATAAGAGTAAATCAGAGATGAATTGATTTGA
AGAATTCTTTTGAGATTTTTGGTGAAAGTGTTTCAGTATGCCCTCTCCTAGGAATTCTGAATTA
GGACAGCCCTGCTAGCTTCCCTGGGAAGGACGTGCCTCACTGTGGATTTTCATTACTAGTGACA
AATCTTGGAGCCAACCTTAATGAGAAATTCCAATATACTATGAATGCACAAATGGTTAGATGCC
TACTGCCCAAATCTTTTTGATAAAGTTACCCGACCAGTGTTTTTTTTTTTTTTTTGGTTCTTTT
TTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCT
AAATCCCCAGCCCCCGACCAGTGTTTAATATAAAATGATACAAAGGCCTTTTTCTGTTCCAATA
TGACTCTACATTTTTTGAGGACATTTTGTTTATGGGTCTATTATAGGAAATACAACTGCAAGAG
ATAATTGTATATATAGTAATACTTAAAGTTTATTTAAAGTTGATTTAAGAGGGGAATGCCTAGA
TGTATACTTTTCACCAGAACATATGGAAAACATTGTGAAGAGATGAAAGCCAGTTAATGTGATC
CCATCATAGAAATCACCAGGGGAACTAAACAGAGAAGCAGTCTTGTTTAGAATAAATATTTAAA
GGTAGCTATCTTTCGTAAGGCCTACGAGGGTAACTTTGTGATATTTAAAGGGCTTACATTTTAG
AATGCTAGATAAGTTACTTTTTAAAAATCTAAGCATTTTATATAAGAAAAGCTCTGTTTTCAAT
TTTTTTCCAACTACCAAATAGATAGGATGTGCTTTAGAGGTAAAGTCTTCACCGTGTTGGAGGC
GGTAGCCCCTCCTGTCAGTCTTTGCATTTCCAAACTCCAGCTTCAGAGGGTCACGTCAGGACGC
CACTGACTCAGAAACAGAAAGTTAACAGGACACTTTACCTTGTGCATTTAAATTTTCTAAGAAA
TGGATATTGATAACGTTATTATCCAAAAATATGTGAGCTTCTCTTAATTGGCCATTTTAAACAA
TCCTAATTTTTATTTTGAGTCTAATTTCAAGTTTAACCACAGTTCATTATTACTAGGTTTTATT
TTGAGTTTTTCAGGGGTGGAGTTTAATTTTTTTTTTTAAGTTCACAATTTTGTTAAGACAGAAT
GTACTAAAATGTTTAAGTTGCTTCATTTCAGTCTTATGTTTGAACATATTAAGTCCCAATAAAT
AGGATCCGTGTTAAGATACATTCCCTTTGTTATTAAAAACAAACAGAAAATACTTGTTAAAATG
TTTTACTAAATAGAGTGGAGGAGTAAGGGCCTCTGGTTCACTGAGTCATTGGTTCTCCAGTTGC
CTTCTAACTACGGAGCCAGGCTCTCCTGTTTTAAAACTGATCCCCATTCCTTTAGAAGCTATGT
TAAGTCTTTCACTCCTTGAAAAAAGGCTCTCCTTTCATTTGTCTAATTAATAGAAGGCACTTGC
ATGGTGAGTGTCTGTTTTCAGATTAGGCGTTAGTCTGTTAGCTTTTCTAAGGTACATGACCATA
CAGTGTTATGCAGAGGGGATCCTCTAGCAGGATCTCAGACACTGTTTTCTTATGATGGCAAATG
AGCAGTCCTCAATTCTAACTCGAGAGATTTTGGTTTGTAGACCTAATGACCAGGCGAATTAGAA
ACTTCCATTGTACTGCATCACTCATCTGCCCAAAGGGCCTTCAAACTGAAGTATACACCTACAT
GAAGGAATGATGTGAGTTCTTAACTAGGAGTGGGGGAAAAGAACTAGGAAAGCTCACATAATGG
AGCAGACAGCCCAAAGGTAGGGGAGAAAGATAGGTTTTCACTGTAAACGTTGACATCAGACGCC
TTTTTATATTTCCATAGTTACTAAGAGAACATATAGAAACCAGAAGGCAGTGGAACAAAAGTGA
GGGAGTAGAGAGATGTTATTGTTGTAGTAAATACAGCTATGAGGAATATTTATAACTAAATACA
TGTTTTAAATAAGATCAAAATTAAGATTTCTTATTTTGCTTATACTAGTATTTATCCACTCTTG
TTTTTGACAGAATGTGGTGACGTGGGATAATTTTTACGTGAAAAATCTTCAGCAAAACAAATTT
ACCAAAATAGCAATGGGTCAGCTAAACACTGGAGTGGCATTAAGCCAGTCCGCAAGCCGGTTAA
GAAGTAGGCTGTAATGTTTCACTCCGGAATGCATAACTTGAGATGTTTGCTGCAACCTAGAAAC
ATGAACTGTGTAGAACAGGGAATGCTGCTGGGCACTACCAGGAGTTACTGAAGTGATGAGTGAG
ATGCTTTCCCATATCGTAATTCTGGTTTATAATAGAAGCGATAGTTCCATGGTTTTGGAAGTAG
TCACTGTAGATTCCAGACAGTCCAGTTGGAGCCTTGGCTTTGGCAGTGTCTGAACATGTTGCTT
TAACTGCTCCTTCAACTTTAGCAGTGCTCCCTGAGTGAAACCCAGGCCGGTTCCAGCAGACACC
GGGCTTCCTGTGGACATAACAGTTTACAAAAACTTAGGAGTTCAGACCCTGATTGAGAAACATT
AAAATTAATGTTTTTATTAAAAGTATAAGAGAAAATTAAGTTTTTTTAAGTGCCTAATTTATAA
AGTTAAATTCTTTATTTCTAAGTTATCAAGCTTTGCTAAGCCTAAAAACCCTGGGCTCAGTTGT
GATGATTTACTAGTAAAGTCACCAGTAATCATTTGAGGAGCTATAGTGTCATGACTTTTACTAA
ATTCCTTGTTTTCTCAAATGGCAGACTGACTATACCTAGAGCTTGAAAAGTCACCCTGTGAGTG
AGTTCATTACCAAAGCCCGTCACCTGCTGAGTAGTCAGCGCTGTCTGCACAGGAGGGAGTAGTG
TGGCTTCAAGATGGCAGCATTGTCCGCAGTGGTGTTTTCCAGAGAGCCTTTTCTGTGAGTAGTG
TGTGCGTGCCCTCTGAGCTTGTCCTGTTAGGTAGCCGTTCTCCGGTTGACAGCTGATATGAAGG
TCTTTGGCACTGAGAATGCAGTTTTGAAAGTTGCACTGCTTTTCTGCCCCCTAGAGTGAGTGGC
ATTGGATATTTAGAAGTGAGGCCATAAACTTGTTACTTTGTTTATACAAAATGATGGCTTCCGA
TGCTTATGTATGGAAGTATTGCTTAAAGAACAGCCTCTGATAAGGTAAAATCTGGTTTTGACTC
AAGTTCTAATGATGTATTTAGTTTATTGATACTGGTGTCTCCTGTTGCATCAGCTAGATATTGC
CTGCCTCTTTGTTAAGGCACCCTGTGGCACCTTACGTTCAACTTGAAGGATGGTATGTGGCCTC
TTTGTGCCTCTACTGTCTTTTCAAAAGCCATTTTATAAAAATCTTAGGTATTTTAATATTTAAA
TATATATATTTGTGAAAGATACTTTTAGAACGAATTTTTTTTAACTTTAAAGTTCCTGTATTCC
CATTTTTAAGAGTAAACTAAAGATTTTCCAGGCTTAGGAGTATCTTTTTTCAGAACCGTGATAA
GAAAGTCAGATTGAGGTAATAAACCAGAGAGTTTGATGATAGGGAAAAAGATATCTGGTGAGGG
GAGACAGATTTAAAGGTGAAAACAATTACTTTGATGTAACAAATTAACTTCTTAAATAAAGTTT
TGTGGTTTTGCTCCTGTGATTTCGTATTTGCTGCTATAGTAGCTCACTATTTTATAGGGCTAAT
ATATAAATCTGGCCCCATTTAAAACTGAGGTCCTTTCTAATCCAAACAGCCTAGAAAGAGACTG
CAGCACAGTCTGCCAGCGGTGGCCAGTGTCCATATAGCTGATGCATGCTTTAATGTTTGCCTGT
AGCTGGCAGCACGGAGGTCAGGGAAGCTTCCTACCCTGCCAGACAGAGCATTATGATTCTTGGG
GGACTGGCATCTGGGAGACAAGACAGGCCAAAGAGGGAACCGCTGAGGAGAGCGTGTGAATGCA
GTTGCATGTTCCCATGTTCTCCTATAGCAGTCCTACTCTCCAGCTGCGCCAGTCCCCATGTCAC
CAGCTCTGTACCAGTTGTCATCTCATTCAAGTGTGGCTTTACTTGGTGACAGTGGCCATAGCTA
AATTACTTAGCATGTTTGACTTTCTACAATAACAAAAATGGTCTTAAATTTTTGTTTTGATTTC
CTAAAAAAAATGTACACAGTGTCATAACTTCACGTTTTATAAACTAGTATCTGGCTATTAGTAT
TTTACAGAAACCATGGTTCTTGGTGACTACATATATATATATATATATTTTTGTGACCTTTTTG
TAAACTAAGTGCCGTTTCAACGTTACAATCATTTTTAGAGTTATTGTAATCAATGTGAATATCA
TGTTTTTTCAAATCTGTTCTGAGCCTAGTGTTTGCTTTGTGAAAAATATGTGTATTGTATATAT
TCTGTATAGTTATACTGTATTGAAATATTAGCTTGTTTGATATGAGAAAAAGTATGTATTGAGT
ACCTTTTTGCTAGCCTGATTGCTTAATCTTTTTTAAAAAGGTTTAATTTTTTTTTTTTAATCTT
TAAACTGGCCTTTATTAATGGTCACAAATAAAGTTGCAGTTAGAAGGGATGGACAGGGAAAATT
TAGTCTTGAGTGTCTTTGGATAGAAACATGAGACTAAGATTTGTTTCGGGTTTTTTGTTTGTTT
TTGTTTTTGTTTTTTTTTTCTCATTAAAATACCTTACTGATGTTTTATGAAA

hide sequence

RefSeq Acc Id:

XM_006242769 ⟹ XP_006242831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,724,241 - 37,782,220 (+)	NCBI
mRatBN7.2	8	29,466,055 - 29,524,027 (+)	NCBI
Rnor_6.0	8	32,165,388 - 32,223,341 (+)	NCBI
Rnor_5.0	8	32,191,422 - 32,248,945 (+)	NCBI

Sequence:

show sequence

AGTGCCCCCAAACAGGCTGGAGTGAAACGAGCGGCTACGGCGGCGCCGGCTCGCACGCGCGCTG
CGGCGGCTCCCTCCCAGCCTCTCCTCCTCCTCTCCCCTCAGTCCCTTTCCCCTTCCCCACCCCG
CCCCGCCGGGCCAGCGCGAGCCGTCGCCCGCCCTCGGCAAACCGCCCCCAACCGCCGCCCGCGC
GCAGCGGGCTGGGCCCCTCGCTCCTCCCCTCAGGCCCACGGGCGCCGGGCGCTCTCCTCCTCGC
GCCTCGCACTCTCGCACTCTCGCACCTCGCGTGCACGCGGGTGAGCGGCGCCGCCATGCGCGCC
CAGTCCCAGGCTGCACACTGGCCTAGGCGCGGCGGCCCGAGATAGGGTCCCCTGAGCCTCCCGG
GGGAGGAGAGGAGCCAGCCGCGCGCTCCGCCCCCTCCCCCCGGGTTGCCGCCGCTACCGCCACC
GCCACCTCGCCGCCCCAGCCTGGCGGGGAAGAGGAGGAGCAGTTGCAGGCCTCCGGGCCCCCGC
ACCGCCGCCCGCAGGGTAATTCTGATTCATTGCATCCTTGAAGAGCATCAATAGAAGAGGGGGA
AAAAAGATGGGTGTGAAAACATTTACTCACAGCTCCTCTTCCCACAGCCAGGAAATGCTGGGAA
AACTAAATATGCTACGAAATGACGGACATTTTTGTGATATCACTATTCGTGTCCAGGACAGAAT
CTTCCGGGCTCACAAGGTGGTACTAGCAGCTTGCAGTGATTTCTTTCGAACCAAACTTGTGGGC
CAAACAGAGGATGAGAACAAAAATGTGTTGGATCTGCATCATGTTACAGTGACTGGCTTTATAC
CTCTGCTGGAATACGCTTACACAGCCACTCTGTCCATTAACACGGAAAATATTATTGATGTTCT
AGCAGCAGCCAGCTATATGCAAATGTTTAGTGTTGCTAGTACGTGCTCAGAGTTCATGAAATCA
AGTATTTTGTGGAATACACCTAATAGCCAACCAGAAAAGGGTCTAGATGCTGGACAAGAAAATA
GTTCCAACTGCAATTTTACTTCTCGAGATGGAAGCATTTCTCCAGTGTCTTCCGAGTGCAGTGC
TGTGGAAAGGACCATTCCTGTCTGCCGAGAGTCCCGGAGAAAACGCAAAAGCTACATTGTTATG
TCTCCTGAGAGCCCTGTAAAATGTAGCACACAAACAAATTCCCCCCAGGTACTGAATTCTTCAG
CTTCCTATGCAGAAAATAGAAATCAGCCAGTTGATTCTTCTTTAGCGTTTCCATGGACTTTCCC
TTTTGGAATTGATAGGAGGATTCAGCCTGAGAAAGCAAAGCAGGCAGAAAATACCCGGACTTTA
GAGTTGCCTGGCCCGTCCGAGGCAGGTAGAAGGATGGCTGACTATGTGACTTGTGAGAGCACAA
AAACTACCTTGCCTCTAGGTACAGAAGAAGACGTCCGGGTCAAAGTAGAAAGATTAAGTGATGA
GGAGGTTCATGAGGAAGTGTCCCAGCCCGTTAGTGCATCTCAGAGCTCACTGAGTGATCAGCAG
ACGGTGCCTGGAAGTGAACCAGTTCAAGAGGACCTTCTGATTAGTCCACAGTCTTCCTCTATAG
GCTCAGTGGATGAAGGAGTCACTGAAGGATTGCCTACACTTCAGAGCACTTCCAGCACCAATGC
TCATGCAGATGAGGATGACAGTACAGAACGACCAAGTCCAAATGGTCCAGACAGACCTTTTCAA
TGTCCAACCTGTGGGGTTCGCTTCACCCGTATTCAGAATCTAAAACAGCACATGCTTATCCACT
CAGGAATTAAACCATTTCAGTGTGACTGCTGTGGAAAAAAGTTTACCAGGGCTTACTCGCTAAA
GATGCATCGCCTAAAGCACGAAGGTAAACGCTGTTTCCGGTGCCAGATATGTAGTGCCACTTTC
ACTTCCTTCGGGGAGTATAAACACCATATGAGGGTTTCCCGGCACATTATCCGCAAGCCTCGGA
TTTACGAGTGCAAAACATGTGGCGCCATGTTCACCAACTCTGGAAATTTAATCGTGCACCTGAG
GAGTCTGAACCATGAAGCATCAGAGCTAGCAAACTACTTCCAGAGCAGTGATTTCTTAGTACCG
GACTACTTAAGCCAGGAGCAAGAAGAGGCCCTTGTTCAGTATGATCTTGGAGAGCACACTTCTG
AAAGCAGCTCTTCTGTTCAAATGCCTGTGATTTCACAGGTCTCCTCAACCCACAACTGTGAAAG
CACTTTTCCCCTGGGGTCTCTTGGTGGGCTTGCAGAAAAGGAGGAGGACCTGCAAGAGCAGCCA
AAGACCAGTGCTCACGATGATGCTCCCCGAGATGACCCCCCCAAGGCAGAGCTGTCTTCTATAA
CTATTGAGTGATTCTGTGATTGGCCTGGGTTTTGGGGTTTTTTTGTTTTGTTTTGTTTGTTTGT
TTGTTTGTTTGTTTTGGAAAGTGCCTGTGCTTGGTCTCATATGTTTAAATTTAATTTAATTTTT
TAAAAAGGGGTTCCCTTTGTAAGCTCTGAAACTAGAGGGTTCTTTGTTTTGTTTTGTTTTTTCA
TAGCTTTAGTATGTATACAATAAGGTAACATTGAAACAGAACATAAACTTTAAGAGTAAGGAAA
AGCAGCTGACTTAGAACATGGCAGTTCTTCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAG
AAGTCGGGTTGTTGTTGACCTTTCTGAGATAAGAGGGCTAATGAGAAGTTACTAAAGAGTTTGA
CAAAGCCTAAGGAATGTTTACTCCTGGACACAGGGTGTTAGAAACCCTGTAGTTTTGGAAGAAT
TTACGGTATTTTTTTTTTCAGATGACGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTTT
TTTTTTAAGCCATTTTGGATTTTCATGGTGAAAAATTAGTATCAGGCAGGTATTTTCTGTACCT
TTGTAGTACTCCTCCAAAGGCTAGGTGTGGTTGAGAAGAGTCAGGCGCGCGTGGAATGGCAGGG
CGCAGAACGAGGTACGTATACCCAGCTTTGCAGGAACTCTCTTCAGACTGTTTTTTTTACTGGC
CATTGACTGCTGACATCTGGTTAACTAGGACATTGCTCAGATAAGTGTCCTCGTGTCCCATCAA
CAGCACTTTCACTTGCATATATACTATTGTGCTGCCATATAAAAGAAAAATATTGAAGATATTC
TATATTTTATATATAGGTTTATGTATTGTTGAGGATGTCGATGCTGTGCTGTTTTGGACAAAAT
AAAAGAATTCTGTTTTGAGGCTACATTCTTAACCCAATTAAGATTGTTTACAAGATCACATTTG
ACAACAATATAATGTTCTTATTCCAAAATATTTTAAGGTATTGCCAAGTTTGTTAAAAGCCGCT
ATTACATAGTTTTCACAGGATGTGAGCAATAATGTGAAAGATAAGAGGTGGTAAAATGATCATC
TATGACTCAAAACTTAGAGGAGCGATTGTTAAGACTAAGATCTAAAAACTTTGCTACTCAGATG
ATAAAATTTATATGATACTCTAGATTGGGATATACTTTTTTATCTGCTGCCATTAAAGCCTCTT
TGATCTGAAGTATTCATGAATCAATAAATAATGAACTTATGTGTAATTTTTTTTTTTCCCGGAA
CTAGGGACCGAACCCAGGCCCTTGCACTTGCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCC
AGCCCCGTAATTTTTTATATAGAAAGTAGCCCCAGCATTTATCATTGTGGTAGCCCCTGATGGG
GTTAGAAGATAAAAACTACATATGTTTTTTTGTTTGACTTTGGATATTTGTAACAGGATCATAG
GTAGCCCAGGTTGGTCCAGAACTCATGATCCTATTGCCTCAGTTCCCCCACAATGCTTGTTAAC
ATTACATATCATAGACACATCACCACATCCAGATCAAGCTATAGTCTTAGTCAAACACATGATC
TGACTTTTACCCCAGTGCCAGACCTTACTTACTTACACTTTATGTTTTAGTAATTTGTCTCTTT
AAAATTTATTAATTCTGCAATTTAATTTCTATCTCTGTCCTTTTTTCTTCTTAATACTGAGAGT
TGAACCCAGGACTTTATATATTATGAGCATGTGCTCTATCACTAGATCCAACCCCAACCCGTAT
TTCTAGTTTTTTACCTGACTCATTTGCTCCCAAGCATAAGTGTGTGACCTTCAGAAAAGTCAAC
TAAAAGAGTCAGTAATTTTTATTTTATTATCATATGATCTTTGAAAACTGTGCCTACTAATACA
TAAATCCTAAAACTCATTAGAATCCTATTTTAGTAAGGTAAATGTTTTTGGTTCTAAACTGGGT
TTTTATTTTGTTAAGAGCTAGAAAAAGGGGAAAGGAAGAAAGAAATAAGAGTAAATCAGAGATG
AATTGATTTGAAGAATTCTTTTGAGATTTTTGGTGAAAGTGTTTCAGTATGCCCTCTCCTAGGA
ATTCTGAATTAGGACAGCCCTGCTAGCTTCCCTGGGAAGGACGTGCCTCACTGTGGATTTTCAT
TACTAGTGACAAATCTTGGAGCCAACCTTAATGAGAAATTCCAATATACTATGAATGCACAAAT
GGTTAGATGCCTACTGCCCAAATCTTTTTGATAAAGTTACCCGACCAGTGTTTTTTTTTTTTTT
TTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCT
ACCACTGAGCTAAATCCCCAGCCCCCGACCAGTGTTTAATATAAAATGATACAAAGGCCTTTTT
CTGTTCCAATATGACTCTACATTTTTTGAGGACATTTTGTTTATGGGTCTATTATAGGAAATAC
AACTGCAAGAGATAATTGTATATATAGTAATACTTAAAGTTTATTTAAAGTTGATTTAAGAGGG
GAATGCCTAGATGTATACTTTTCACCAGAACATATGGAAAACATTGTGAAGAGATGAAAGCCAG
TTAATGTGATCCCATCATAGAAATCACCAGGGGAACTAAACAGAGAAGCAGTCTTGTTTAGAAT
AAATATTTAAAGGTAGCTATCTTTCGTAAGGCCTACGAGGGTAACTTTGTGATATTTAAAGGGC
TTACATTTTAGAATGCTAGATAAGTTACTTTTTAAAAATCTAAGCATTTTATATAAGAAAAGCT
CTGTTTTCAATTTTTTTCCAACTACCAAATAGATAGGATGTGCTTTAGAGGTAAAGTCTTCACC
GTGTTGGAGGCGGTAGCCCCTCCTGTCAGTCTTTGCATTTCCAAACTCCAGCTTCAGAGGGTCA
CGTCAGGACGCCACTGACTCAGAAACAGAAAGTTAACAGGACACTTTACCTTGTGCATTTAAAT
TTTCTAAGAAATGGATATTGATAACGTTATTATCCAAAAATATGTGAGCTTCTCTTAATTGGCC
ATTTTAAACAATCCTAATTTTTATTTTGAGTCTAATTTCAAGTTTAACCACAGTTCATTATTAC
TAGGTTTTATTTTGAGTTTTTCAGGGGTGGAGTTTAATTTTTTTTTTTAAGTTCACAATTTTGT
TAAGACAGAATGTACTAAAATGTTTAAGTTGCTTCATTTCAGTCTTATGTTTGAACATATTAAG
TCCCAATAAATAGGATCCGTGTTAAGATACATTCCCTTTGTTATTAAAAACAAACAGAAAATAC
TTGTTAAAATGTTTTACTAAATAGAGTGGAGGAGTAAGGGCCTCTGGTTCACTGAGTCATTGGT
TCTCCAGTTGCCTTCTAACTACGGAGCCAGGCTCTCCTGTTTTAAAACTGATCCCCATTCCTTT
AGAAGCTATGTTAAGTCTTTCACTCCTTGAAAAAAGGCTCTCCTTTCATTTGTCTAATTAATAG
AAGGCACTTGCATGGTGAGTGTCTGTTTTCAGATTAGGCGTTAGTCTGTTAGCTTTTCTAAGGT
ACATGACCATACAGTGTTATGCAGAGGGGATCCTCTAGCAGGATCTCAGACACTGTTTTCTTAT
GATGGCAAATGAGCAGTCCTCAATTCTAACTCGAGAGATTTTGGTTTGTAGACCTAATGACCAG
GCGAATTAGAAACTTCCATTGTACTGCATCACTCATCTGCCCAAAGGGCCTTCAAACTGAAGTA
TACACCTACATGAAGGAATGATGTGAGTTCTTAACTAGGAGTGGGGGAAAAGAACTAGGAAAGC
TCACATAATGGAGCAGACAGCCCAAAGGTAGGGGAGAAAGATAGGTTTTCACTGTAAACGTTGA
CATCAGACGCCTTTTTATATTTCCATAGTTACTAAGAGAACATATAGAAACCAGAAGGCAGTGG
AACAAAAGTGAGGGAGTAGAGAGATGTTATTGTTGTAGTAAATACAGCTATGAGGAATATTTAT
AACTAAATACATGTTTTAAATAAGATCAAAATTAAGATTTCTTATTTTGCTTATACTAGTATTT
ATCCACTCTTGTTTTTGACAGAATGTGGTGACGTGGGATAATTTTTACGTGAAAAATCTTCAGC
AAAACAAATTTACCAAAATAGCAATGGGTCAGCTAAACACTGGAGTGGCATTAAGCCAGTCCGC
AAGCCGGTTAAGAAGTAGGCTGTAATGTTTCACTCCGGAATGCATAACTTGAGATGTTTGCTGC
AACCTAGAAACATGAACTGTGTAGAACAGGGAATGCTGCTGGGCACTACCAGGAGTTACTGAAG
TGATGAGTGAGATGCTTTCCCATATCGTAATTCTGGTTTATAATAGAAGCGATAGTTCCATGGT
TTTGGAAGTAGTCACTGTAGATTCCAGACAGTCCAGTTGGAGCCTTGGCTTTGGCAGTGTCTGA
ACATGTTGCTTTAACTGCTCCTTCAACTTTAGCAGTGCTCCCTGAGTGAAACCCAGGCCGGTTC
CAGCAGACACCGGGCTTCCTGTGGACATAACAGTTTACAAAAACTTAGGAGTTCAGACCCTGAT
TGAGAAACATTAAAATTAATGTTTTTATTAAAAGTATAAGAGAAAATTAAGTTTTTTTAAGTGC
CTAATTTATAAAGTTAAATTCTTTATTTCTAAGTTATCAAGCTTTGCTAAGCCTAAAAACCCTG
GGCTCAGTTGTGATGATTTACTAGTAAAGTCACCAGTAATCATTTGAGGAGCTATAGTGTCATG
ACTTTTACTAAATTCCTTGTTTTCTCAAATGGCAGACTGACTATACCTAGAGCTTGAAAAGTCA
CCCTGTGAGTGAGTTCATTACCAAAGCCCGTCACCTGCTGAGTAGTCAGCGCTGTCTGCACAGG
AGGGAGTAGTGTGGCTTCAAGATGGCAGCATTGTCCGCAGTGGTGTTTTCCAGAGAGCCTTTTC
TGTGAGTAGTGTGTGCGTGCCCTCTGAGCTTGTCCTGTTAGGTAGCCGTTCTCCGGTTGACAGC
TGATATGAAGGTCTTTGGCACTGAGAATGCAGTTTTGAAAGTTGCACTGCTTTTCTGCCCCCTA
GAGTGAGTGGCATTGGATATTTAGAAGTGAGGCCATAAACTTGTTACTTTGTTTATACAAAATG
ATGGCTTCCGATGCTTATGTATGGAAGTATTGCTTAAAGAACAGCCTCTGATAAGGTAAAATCT
GGTTTTGACTCAAGTTCTAATGATGTATTTAGTTTATTGATACTGGTGTCTCCTGTTGCATCAG
CTAGATATTGCCTGCCTCTTTGTTAAGGCACCCTGTGGCACCTTACGTTCAACTTGAAGGATGG
TATGTGGCCTCTTTGTGCCTCTACTGTCTTTTCAAAAGCCATTTTATAAAAATCTTAGGTATTT
TAATATTTAAATATATATATTTGTGAAAGATACTTTTAGAACGAATTTTTTTTAACTTTAAAGT
TCCTGTATTCCCATTTTTAAGAGTAAACTAAAGATTTTCCAGGCTTAGGAGTATCTTTTTTCAG
AACCGTGATAAGAAAGTCAGATTGAGGTAATAAACCAGAGAGTTTGATGATAGGGAAAAAGATA
TCTGGTGAGGGGAGACAGATTTAAAGGTGAAAACAATTACTTTGATGTAACAAATTAACTTCTT
AAATAAAGTTTTGTGGTTTTGCTCCTGTGATTTCGTATTTGCTGCTATAGTAGCTCACTATTTT
ATAGGGCTAATATATAAATCTGGCCCCATTTAAAACTGAGGTCCTTTCTAATCCAAACAGCCTA
GAAAGAGACTGCAGCACAGTCTGCCAGCGGTGGCCAGTGTCCATATAGCTGATGCATGCTTTAA
TGTTTGCCTGTAGCTGGCAGCACGGAGGTCAGGGAAGCTTCCTACCCTGCCAGACAGAGCATTA
TGATTCTTGGGGGACTGGCATCTGGGAGACAAGACAGGCCAAAGAGGGAACCGCTGAGGAGAGC
GTGTGAATGCAGTTGCATGTTCCCATGTTCTCCTATAGCAGTCCTACTCTCCAGCTGCGCCAGT
CCCCATGTCACCAGCTCTGTACCAGTTGTCATCTCATTCAAGTGTGGCTTTACTTGGTGACAGT
GGCCATAGCTAAATTACTTAGCATGTTTGACTTTCTACAATAACAAAAATGGTCTTAAATTTTT
GTTTTGATTTCCTAAAAAAAATGTACACAGTGTCATAACTTCACGTTTTATAAACTAGTATCTG
GCTATTAGTATTTTACAGAAACCATGGTTCTTGGTGACTACATATATATATATATATATTTTTG
TGACCTTTTTGTAAACTAAGTGCCGTTTCAACGTTACAATCATTTTTAGAGTTATTGTAATCAA
TGTGAATATCATGTTTTTTCAAATCTGTTCTGAGCCTAGTGTTTGCTTTGTGAAAAATATGTGT
ATTGTATATATTCTGTATAGTTATACTGTATTGAAATATTAGCTTGTTTGATATGAGAAAAAGT
ATGTATTGAGTACCTTTTTGCTAGCCTGATTGCTTAATCTTTTTTAAAAAGGTTTAATTTTTTT
TTTTTAATCTTTAAACTGGCCTTTATTAATGGTCACAAATAAAGTTGCAGTTAGAAGGGATGGA
CAGGGAAAATTTAGTCTTGAGTGTCTTTGGATAGAAACATGAGACTAAGATTTGTTTCGGGTTT
TTTGTTTGTTTTTGTTTTTGTTTTTTTTTTCTCATTAAAATACCTTACTGATGTTTTATGAAA

hide sequence

RefSeq Acc Id:

XM_063265731 ⟹ XP_063121801

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,724,242 - 37,782,220 (+)	NCBI

RefSeq Acc Id:

XM_063265733 ⟹ XP_063121803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,724,238 - 37,782,220 (+)	NCBI

RefSeq Acc Id:

XM_063265734 ⟹ XP_063121804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,724,237 - 37,782,220 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030114	(Get FASTA)	NCBI Sequence Viewer
	NP_001423449	(Get FASTA)	NCBI Sequence Viewer
	XP_006242830	(Get FASTA)	NCBI Sequence Viewer
	XP_006242831	(Get FASTA)	NCBI Sequence Viewer
	XP_063121801	(Get FASTA)	NCBI Sequence Viewer
	XP_063121803	(Get FASTA)	NCBI Sequence Viewer
	XP_063121804	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04681	(Get FASTA)	NCBI Sequence Viewer
	EDL83318	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007539
	ENSRNOP00000084481
GenBank Protein	Q3SWU4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001030114 ⟸ NM_001034942

- UniProtKB:

Q3SWU4 (UniProtKB/Swiss-Prot), A6JYF7 (UniProtKB/TrEMBL), A0A0G2JVS3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQT
EDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI
LWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSP
ESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLEL
PGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTV
PGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDRLENVQYPYQLYIAPST
SSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLK
HEVIS

hide sequence

RefSeq Acc Id:

XP_006242831 ⟸ XM_006242769

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQT
EDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI
LWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSP
ESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLEL
PGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTV
PGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDSTERPSPNGPDRPFQCP
TCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLKHEGKRCFRCQICSATFTS
FGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHEASELANYFQSSDFLVPDY
LSQEQEEALVQYDLGEHTSESSSSVQMPVISQVSSTHNCESTFPLGSLGGLAEKEEDLQEQPKT
SAHDDAPRDDPPKAELSSITIE

hide sequence

RefSeq Acc Id:

XP_006242830 ⟸ XM_006242768

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQT
EDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI
LWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSP
ESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLEL
PGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTV
PGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDRLENVQYPYQLYIAPST
SSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLK
HEGKRCFRCQICSATFTSFGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHE
ASELANYFQSSDFLVPDYLSQEQEEALVQYDLGEHTSESSSSVQMPVISQVSSTHNCESTFPLG
SLGGLAEKEEDLQEQPKTSAHDDAPRDDPPKAELSSITIE

hide sequence

Ensembl Acc Id:

ENSRNOP00000007539 ⟸ ENSRNOT00000007539

Ensembl Acc Id:

ENSRNOP00000069596 ⟸ ENSRNOT00000081145

Ensembl Acc Id:

ENSRNOP00000084481 ⟸ ENSRNOT00000100746

RefSeq Acc Id:	XP_063121804 ⟸ XM_063265734
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063121803 ⟸ XM_063265733
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063121801 ⟸ XM_063265731
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JVS3 (UniProtKB/TrEMBL)

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3SWU4-F1-model_v2	AlphaFold	Q3SWU4	1-453	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695823

Promoter ID:

EPDNEW_R6348

Type:

single initiation site

Name:

Zbtb44_1

Description:

zinc finger and BTB domain containing 44

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	32,165,790 - 32,165,850	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308984	AgrOrtholog
BioCyc Gene	G2FUF-31264	BioCyc
Ensembl Genes	ENSRNOG00000005578	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000007539	ENTREZGENE
	ENSRNOT00000100746	ENTREZGENE
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
	Potassium Channel Kv1.1, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7456912	IMAGE-MGC_LOAD
InterPro	BTB/POZ_dom	UniProtKB/Swiss-Prot
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
	ZnFinger_BTB_dom_contain	UniProtKB/Swiss-Prot
KEGG Report	rno:363035	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125242	IMAGE-MGC_LOAD
NCBI Gene	363035	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/Swiss-Prot
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 44 ISOFORM X1	UniProtKB/Swiss-Prot
Pfam	BTB	UniProtKB/Swiss-Prot
	zf-C2H2	UniProtKB/Swiss-Prot
PhenoGen	Zbtb44	PhenoGen
PROSITE	BTB	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005578	RatGTEx
SMART	BTB	UniProtKB/Swiss-Prot
	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54695	UniProtKB/Swiss-Prot
	SSF57667	UniProtKB/Swiss-Prot
UniProt	A0A0G2JVS3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXB6_RAT	UniProtKB/TrEMBL
	A0A8L2Q3C2	ENTREZGENE, UniProtKB/TrEMBL
	A6JYF7	ENTREZGENE, UniProtKB/TrEMBL
	Q3SWU4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-03	Zbtb44	zinc finger and BTB domain containing 44	Btbd15	BTB (POZ) domain containing 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Btbd15	BTB (POZ) domain containing 15	RGD1308984	similar to RIKEN cDNA 6030404E16	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1308984	similar to RIKEN cDNA 6030404E16	RGD1308984_predicted	similar to RIKEN cDNA 6030404E16 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308984_predicted	similar to RIKEN cDNA 6030404E16 (predicted)	LOC363035_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363035_predicted	similar to RIKEN cDNA 6030404E16 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar