Zbtb44 (zinc finger and BTB domain containing 44) - Rat Genome Database

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Gene: Zbtb44 (zinc finger and BTB domain containing 44) Rattus norvegicus
Analyze
Symbol: Zbtb44
Name: zinc finger and BTB domain containing 44
RGD ID: 1308984
Description: Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZBTB44 (zinc finger and BTB domain containing 44); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BTB (POZ) domain containing 15; BTB/POZ domain-containing protein 15; Btbd15; LOC363035; MGC125242; RGD1308984; similar to RIKEN cDNA 6030404E16; zinc finger and BTB domain-containing protein 44
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8837,724,237 - 37,782,220 (+)NCBIGRCr8
mRatBN7.2829,466,055 - 29,524,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl829,466,352 - 29,518,163 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx833,535,723 - 33,587,518 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0831,830,117 - 31,881,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0829,698,088 - 29,749,760 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0832,165,388 - 32,223,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl832,165,810 - 32,217,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0832,191,422 - 32,248,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4830,841,899 - 30,894,133 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1830,850,442 - 30,921,405 (+)NCBI
Celera830,928,937 - 30,979,901 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cobalt dichloride  (EXP)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
fenthion  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
indometacin  (ISO)
isoprenaline  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenacetin  (EXP)
phenobarbital  (ISO)
phenylhydrazine  (EXP)
phenylmercury acetate  (ISO)
PhIP  (EXP)
pinosylvin  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
pyridaben  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
trans-pinosylvin  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Zbtb44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8837,724,237 - 37,782,220 (+)NCBIGRCr8
mRatBN7.2829,466,055 - 29,524,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl829,466,352 - 29,518,163 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx833,535,723 - 33,587,518 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0831,830,117 - 31,881,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0829,698,088 - 29,749,760 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0832,165,388 - 32,223,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl832,165,810 - 32,217,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0832,191,422 - 32,248,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4830,841,899 - 30,894,133 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1830,850,442 - 30,921,405 (+)NCBI
Celera830,928,937 - 30,979,901 (+)NCBICelera
Cytogenetic Map8q13NCBI
ZBTB44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811130,226,677 - 130,314,917 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11130,226,677 - 130,314,917 (-)EnsemblGRCh38hg38GRCh38
GRCh3711130,096,572 - 130,184,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611129,608,335 - 129,689,817 (-)NCBINCBI36Build 36hg18NCBI36
Celera11127,264,450 - 127,352,483 (-)NCBICelera
Cytogenetic Map11q24.3NCBI
HuRef11126,049,248 - 126,084,496 (-)NCBIHuRef
CHM1_111129,982,379 - 130,070,414 (-)NCBICHM1_1
T2T-CHM13v2.011130,262,483 - 130,350,761 (-)NCBIT2T-CHM13v2.0
Zbtb44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39930,941,016 - 30,987,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl930,941,940 - 30,987,181 (+)EnsemblGRCm39 Ensembl
GRCm38931,029,720 - 31,075,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl931,030,644 - 31,075,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv37930,838,229 - 30,883,470 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36930,780,209 - 30,819,776 (+)NCBIMGSCv36mm8
Celera928,289,333 - 28,335,081 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map916.56NCBI
Zbtb44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541231,147,147 - 31,205,226 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541231,146,620 - 31,205,226 (-)NCBIChiLan1.0ChiLan1.0
ZBTB44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29130,904,391 - 130,992,454 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111132,015,072 - 132,103,110 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011125,037,645 - 125,125,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111128,929,819 - 129,017,533 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11128,929,826 - 128,964,790 (-)Ensemblpanpan1.1panPan2
ZBTB44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.154,574,604 - 4,641,431 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl54,574,243 - 4,635,066 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha54,634,397 - 4,702,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.054,534,775 - 4,601,607 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl54,535,991 - 4,595,515 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.154,568,897 - 4,635,604 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.054,577,604 - 4,644,363 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.054,604,461 - 4,671,747 (+)NCBIUU_Cfam_GSD_1.0
Zbtb44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947112,330,715 - 112,397,948 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365722,052,408 - 2,113,821 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365722,052,408 - 2,117,120 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl956,947,391 - 57,017,791 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1956,947,145 - 57,018,803 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2963,071,002 - 63,152,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,317,527 - 121,382,608 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,607 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248124,631,468 - 4,694,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb44
234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:674
Count of miRNA genes:284
Interacting mature miRNAs:352
Transcripts:ENSRNOT00000007539
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82664491246711092Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)82815732330848259Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat

Markers in Region
D8Rat162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2829,502,665 - 29,502,918 (+)MAPPERmRatBN7.2
Rnor_6.0832,201,981 - 32,202,233NCBIRnor6.0
Rnor_5.0832,227,585 - 32,227,837UniSTSRnor5.0
RGSC_v3.4830,878,636 - 30,878,889RGDRGSC3.4
RGSC_v3.4830,878,637 - 30,878,889UniSTSRGSC3.4
RGSC_v3.1830,887,403 - 30,887,655RGD
Celera830,964,403 - 30,964,657UniSTS
RH 3.4 Map8246.2UniSTS
RH 3.4 Map8246.2RGD
SHRSP x BN Map821.82UniSTS
SHRSP x BN Map821.82RGD
Cytogenetic Map8q13UniSTS
RH128981  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2829,517,834 - 29,518,025 (+)MAPPERmRatBN7.2
Rnor_6.0832,217,149 - 32,217,339NCBIRnor6.0
Rnor_5.0832,242,753 - 32,242,943UniSTSRnor5.0
RGSC_v3.4830,893,805 - 30,893,995UniSTSRGSC3.4
Celera830,979,573 - 30,979,763UniSTS
RH 3.4 Map8243.6UniSTS
Cytogenetic Map8q13UniSTS
RH142178  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0832,220,143 - 32,220,276UniSTSRnor5.0
RGSC_v3.4830,972,451 - 30,972,584UniSTSRGSC3.4
Celera831,122,808 - 31,122,941UniSTS
Cytogenetic Map8q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 44 28 19 28 8 8 73 28 41 11 8
Low 3 17 13 13 13 3 1 7
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000007539   ⟹   ENSRNOP00000007539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl829,489,244 - 29,518,163 (+)Ensembl
Rnor_6.0 Ensembl832,165,810 - 32,217,476 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081145   ⟹   ENSRNOP00000069596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl829,466,352 - 29,514,768 (+)Ensembl
Rnor_6.0 Ensembl832,188,617 - 32,214,469 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100746   ⟹   ENSRNOP00000084481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl829,466,352 - 29,514,732 (+)Ensembl
RefSeq Acc Id: NM_001034942   ⟹   NP_001030114
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8837,724,688 - 37,776,356 (+)NCBI
mRatBN7.2829,466,498 - 29,518,163 (+)NCBI
Rnor_6.0832,165,810 - 32,217,477 (+)NCBI
Rnor_5.0832,191,422 - 32,248,945 (+)NCBI
RGSC_v3.4830,841,899 - 30,894,133 (+)RGD
Celera830,928,937 - 30,979,901 (+)RGD
Sequence:
RefSeq Acc Id: XM_006242768   ⟹   XP_006242830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8837,724,242 - 37,782,220 (+)NCBI
mRatBN7.2829,466,057 - 29,524,027 (+)NCBI
Rnor_6.0832,165,389 - 32,223,341 (+)NCBI
Rnor_5.0832,191,422 - 32,248,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242769   ⟹   XP_006242831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8837,724,241 - 37,782,220 (+)NCBI
mRatBN7.2829,466,055 - 29,524,027 (+)NCBI
Rnor_6.0832,165,388 - 32,223,341 (+)NCBI
Rnor_5.0832,191,422 - 32,248,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063265731   ⟹   XP_063121801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8837,724,242 - 37,782,220 (+)NCBI
RefSeq Acc Id: XM_063265733   ⟹   XP_063121803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8837,724,238 - 37,782,220 (+)NCBI
RefSeq Acc Id: XM_063265734   ⟹   XP_063121804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8837,724,237 - 37,782,220 (+)NCBI
RefSeq Acc Id: NP_001030114   ⟸   NM_001034942
- UniProtKB: Q3SWU4 (UniProtKB/Swiss-Prot),   A6JYF7 (UniProtKB/TrEMBL),   A0A0G2JVS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242831   ⟸   XM_006242769
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006242830   ⟸   XM_006242768
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q3C2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007539   ⟸   ENSRNOT00000007539
RefSeq Acc Id: ENSRNOP00000069596   ⟸   ENSRNOT00000081145
RefSeq Acc Id: ENSRNOP00000084481   ⟸   ENSRNOT00000100746
RefSeq Acc Id: XP_063121804   ⟸   XM_063265734
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121803   ⟸   XM_063265733
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121801   ⟸   XM_063265731
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JVS3 (UniProtKB/TrEMBL)
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3SWU4-F1-model_v2 AlphaFold Q3SWU4 1-453 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695823
Promoter ID:EPDNEW_R6348
Type:single initiation site
Name:Zbtb44_1
Description:zinc finger and BTB domain containing 44
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0832,165,790 - 32,165,850EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308984 AgrOrtholog
BioCyc Gene G2FUF-31264 BioCyc
Ensembl Genes ENSRNOG00000005578 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007539.7 UniProtKB/TrEMBL
  ENSRNOT00000081145 ENTREZGENE
  ENSRNOT00000081145.2 UniProtKB/TrEMBL
  ENSRNOT00000100746.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456912 IMAGE-MGC_LOAD
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363035 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:125242 IMAGE-MGC_LOAD
NCBI Gene 363035 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 44 UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 44 ISOFORM X1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zbtb44 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005578 RatGTEx
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JVS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXB6_RAT UniProtKB/TrEMBL
  A0A8L2Q3C2 ENTREZGENE, UniProtKB/TrEMBL
  A6JYF7 ENTREZGENE, UniProtKB/TrEMBL
  Q3SWU4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Zbtb44  zinc finger and BTB domain containing 44  Btbd15  BTB (POZ) domain containing 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Btbd15  BTB (POZ) domain containing 15  RGD1308984  similar to RIKEN cDNA 6030404E16  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1308984  similar to RIKEN cDNA 6030404E16  RGD1308984_predicted  similar to RIKEN cDNA 6030404E16 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308984_predicted  similar to RIKEN cDNA 6030404E16 (predicted)  LOC363035_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363035_predicted  similar to RIKEN cDNA 6030404E16 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL