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Gene: Phldb1 (pleckstrin homology-like domain, family B, member 1) Rattus norvegicus

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Symbol:

Phldb1

Name:

pleckstrin homology-like domain, family B, member 1

RGD ID:

620878

Description:

Predicted to be involved in regulation of embryonic development; regulation of epithelial to mesenchymal transition; and regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Human ortholog(s) of this gene implicated in osteogenesis imperfecta. Orthologous to human PHLDB1 (pleckstrin homology like domain family B member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ll5; pleckstrin homology-like domain family B member 1; protein LL5-alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,900,338 - 53,948,325 (-)	NCBI		GRCr8
mRatBN7.2	8	45,003,543 - 45,051,541 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	45,003,538 - 45,051,522 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,498,524 - 50,546,453 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,777,244 - 48,825,173 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,647,857 - 46,695,779 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,997,189 - 49,045,176 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,997,184 - 49,045,154 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,615,937 - 47,666,166 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,645,164 - 47,686,143 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	47,653,935 - 47,682,657 (-)	NCBI
Celera	8	44,588,473 - 44,629,442 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

CD3epsilon deficiency (ISO)

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

Familial Atrial Fibrillation 14 (ISO)

glycogen storage disease Ib (ISO)

high grade glioma (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

inflammatory bowel disease 28 (ISO)

isolated microphthalmia 5 (ISO)

long QT syndrome 10 (ISO)

osteogenesis imperfecta type 23 (ISO)

RASopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(S)-nicotine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlormequat chloride (EXP)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

coumarin (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

ethanol (ISO)

fipronil (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

levetiracetam (EXP)

methamphetamine (ISO)

methapyrilene (ISO)

morphine (ISO)

Muraglitazar (EXP)

nickel atom (ISO)

nicotine (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

potassium chromate (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

Tesaglitazar (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

troglitazone (EXP)

urethane (ISO)

valproic acid (EXP,ISO)

zebularine (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

basement membrane organization (ISO)

regulation of microtubule cytoskeleton organization (IBA)

Cellular Component

basal cortex (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Cloning of LL5, a novel protein encoding cDNA from a rat pituitary library.	Levi L, etal., Biochim Biophys Acta 1993 Nov 16;1216(2):342-4.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23940118

Genomics

Comparative Map Data

Phldb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,900,338 - 53,948,325 (-)	NCBI		GRCr8
mRatBN7.2	8	45,003,543 - 45,051,541 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	45,003,538 - 45,051,522 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,498,524 - 50,546,453 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,777,244 - 48,825,173 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,647,857 - 46,695,779 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,997,189 - 49,045,176 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,997,184 - 49,045,154 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,615,937 - 47,666,166 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,645,164 - 47,686,143 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	47,653,935 - 47,682,657 (-)	NCBI
Celera	8	44,588,473 - 44,629,442 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

PHLDB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	118,606,436 - 118,658,028 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	118,606,440 - 118,658,031 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	118,477,151 - 118,528,738 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	117,982,423 - 118,033,951 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	117,982,422 - 118,033,951	NCBI
Celera	11	115,637,985 - 115,689,504 (+)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,414,710 - 114,466,582 (+)	NCBI		HuRef
CHM1_1	11	118,363,870 - 118,415,396 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	118,625,712 - 118,677,249 (+)	NCBI		T2T-CHM13v2.0

Phldb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,597,605 - 44,649,800 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	44,597,601 - 44,646,495 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	44,686,308 - 44,735,248 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,686,304 - 44,735,198 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,494,391 - 44,543,277 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	44,437,303 - 44,486,189 (-)	NCBI		MGSCv36	mm8
Celera	9	41,950,682 - 41,999,929 (-)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Phldb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	19,756,379 - 19,800,984 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	19,754,997 - 19,800,984 (+)	NCBI	ChiLan1.0	ChiLan1.0

PHLDB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	119,312,878 - 119,363,483 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	120,417,865 - 120,468,493 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	113,446,275 - 113,496,941 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	117,376,205 - 117,426,391 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,376,205 - 117,426,391 (+)	Ensembl	panpan1.1		panPan2

PHLDB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	15,090,823 - 15,138,397 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	15,090,813 - 15,134,784 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	15,143,223 - 15,189,894 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	15,034,008 - 15,080,652 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	15,034,001 - 15,080,594 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	15,172,407 - 15,219,091 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	15,075,943 - 15,122,594 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	15,116,373 - 15,159,865 (-)	NCBI		UU_Cfam_GSD_1.0

Phldb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	100,718,559 - 100,766,591 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	3,639,982 - 3,688,450 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	3,639,992 - 3,688,000 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PHLDB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	45,902,155 - 45,949,415 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	45,902,099 - 45,949,415 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	50,924,779 - 50,943,422 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PHLDB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,001,516 - 110,053,166 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	110,002,591 - 110,052,831 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	15,982,569 - 16,034,239 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Phldb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	14,016,587 - 14,065,905 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	14,016,774 - 14,064,069 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Phldb1
141 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	205
Count of miRNA genes:	127
Interacting mature miRNAs:	164
Transcripts:	ENSRNOT00000047303
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat

Markers in Region

AU041016

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	45,003,641 - 45,003,805 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	48,997,293 - 48,997,456	NCBI	Rnor6.0
Rnor_5.0	8	47,616,041 - 47,616,204	UniSTS	Rnor5.0
RGSC_v3.4	8	47,645,268 - 47,645,431	UniSTS	RGSC3.4
Celera	8	44,588,577 - 44,588,740	UniSTS
Cytogenetic Map	8	q22	UniSTS

BI278154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	45,003,725 - 45,003,925 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	48,997,377 - 48,997,576	NCBI	Rnor6.0
Rnor_5.0	8	47,616,125 - 47,616,324	UniSTS	Rnor5.0
RGSC_v3.4	8	47,645,352 - 47,645,551	UniSTS	RGSC3.4
Celera	8	44,588,661 - 44,588,860	UniSTS
RH 3.4 Map	8	439.5	UniSTS
Cytogenetic Map	8	q22	UniSTS

BE106591

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	45,023,867 - 45,024,020 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,017,515 - 49,017,667	NCBI	Rnor6.0
Rnor_5.0	8	47,636,263 - 47,636,415	UniSTS	Rnor5.0
RGSC_v3.4	8	47,665,490 - 47,665,642	UniSTS	RGSC3.4
Celera	8	44,608,787 - 44,608,939	UniSTS
RH 3.4 Map	8	442.8	UniSTS
Cytogenetic Map	8	q22	UniSTS

AU047896

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	53,932,401 - 53,932,571 (+)	Marker Load Pipeline
mRatBN7.2	8	45,035,610 - 45,035,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,029,258 - 49,029,427	NCBI	Rnor6.0
Rnor_5.0	8	47,648,006 - 47,648,175	UniSTS	Rnor5.0
RGSC_v3.4	8	47,677,232 - 47,677,401	UniSTS	RGSC3.4
Celera	8	44,620,530 - 44,620,699	UniSTS
Cytogenetic Map	8	q22	UniSTS

AU047883

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	53,932,410 - 53,932,656 (+)	Marker Load Pipeline
mRatBN7.2	8	45,035,619 - 45,035,865 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,029,267 - 49,029,512	NCBI	Rnor6.0
Rnor_5.0	8	47,648,015 - 47,648,260	UniSTS	Rnor5.0
RGSC_v3.4	8	47,677,241 - 47,677,486	UniSTS	RGSC3.4
Celera	8	44,620,539 - 44,620,784	UniSTS
Cytogenetic Map	8	q22	UniSTS

RH140559

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	53,905,368 - 53,905,677 (+)	Marker Load Pipeline
mRatBN7.2	8	45,008,573 - 45,008,882 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	49,002,225 - 49,002,533	NCBI	Rnor6.0
Rnor_5.0	8	47,620,973 - 47,621,281	UniSTS	Rnor5.0
RGSC_v3.4	8	47,650,200 - 47,650,508	UniSTS	RGSC3.4
Celera	8	44,593,509 - 44,593,817	UniSTS
RH 3.4 Map	8	441.5	UniSTS
Cytogenetic Map	8	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001400943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X74226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000047303 ⟹ ENSRNOP00000046235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,538 - 45,051,522 (-)	Ensembl
Rnor_6.0 Ensembl	8	48,997,189 - 49,038,169 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078816 ⟹ ENSRNOP00000068824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,544 - 45,032,270 (-)	Ensembl
Rnor_6.0 Ensembl	8	48,997,195 - 49,025,917 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088034 ⟹ ENSRNOP00000069330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,538 - 45,051,522 (-)	Ensembl
Rnor_6.0 Ensembl	8	48,997,184 - 49,045,154 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096683 ⟹ ENSRNOP00000096080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,544 - 45,038,031 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100408 ⟹ ENSRNOP00000091125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,538 - 45,051,522 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103833 ⟹ ENSRNOP00000094780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,544 - 45,051,522 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114831 ⟹ ENSRNOP00000087775

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	45,003,538 - 45,051,522 (-)	Ensembl

RefSeq Acc Id:

NM_001191578 ⟹ NP_001178507

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,285 (-)	NCBI
mRatBN7.2	8	45,003,543 - 45,051,501 (-)	NCBI
Rnor_6.0	8	48,997,189 - 49,038,169 (-)	NCBI
Rnor_5.0	8	47,615,937 - 47,666,166 (-)	NCBI
Celera	8	44,588,473 - 44,629,442 (-)	NCBI

Sequence:

show sequence

ATGGCTACTCTTAATAGGAACCAGCTAGGCCCTGGATGCAAGACCCAGGCTGTGGTGCAGAAAG
GGCCGTTGGATCTGATTGAGACGGGTCAAGGACTGAAGGTGCAGACAGACAAACCTCATCTTGT
GAGCCTGGGCAGCGGCAGGCTCAGCACAGCAATCACTCTCCTGCCGCTGGAGGAAGGGAGGACA
GTGATTGGTTCAGCAGCCAGGGACATCTCACTGCAAGGTCCAGGCCTTGCTCCAGAACACTGCT
ACATCGAGAATCTGAGGGGCACTCTCACCCTGTACCCTTGTGGCAATGCCTGCACTATTGATGG
GCTCCCTGTTCGGCAGCCCACCCGGCTCACTCAGGGCTGCATGTTGTGTCTGGGTCAGTCCACC
TTCCTGCGCTTTAACCACCCAGCCGAAGCCAAGTGGATGAAGAGTATGATTCCAGCAGGGGGCC
GGGCCCCAGGGTCCACGTACAGTCCTGGCTCTGCTGAATCAGAGAGCTTGGTCAATGGGAACCA
CACAGCACAGCCCGCAACCCGGGCACCTCCAGCCTGTGCCAGCCACAGTTCCCTGGTGAGCTCC
ATTGAAAAGGACCTGCAGGAAATCATGGACTCGTTGGTGCTAGAGGAGCCCGGAGCTGCAGGCA
AGAAGCCTGCAGCCACATCCCCGTTGTCGCCAGTGGCTAATGGTGGACGCTACCTGTTGTCCCC
TCCAACCAGCCCAGGAGCCATGTCTGTGGGCTCCAGCTATGAGAACACCTCTCCGGCCTTCTCT
CCACTGTCCTCACCAGCCAGCAGTGGAAGCTGTGCTAGCCACTCTCCCAGTGGGCAGGAGCCAG
GACCTTCTGTGCCCCCGCTCGTGCCTGCCCGTTCCTCCAGCTACCATTTGGCTCTGCAACCCCC
ACAGTCCCGCCCAAGTGGTTCCCGCTCCTCTGAGAGTCCCCGGCTGGGCAGGAAAGGGGGTCAT
GAGAGACCTCCCAGCCCTGGTCTCCGAGGTCTTCTGACTGACAGTCCTGCAGCTACAGTCTTGG
CTGAGGCCCGCAGAACCACTGAGAGTCCCAGGCTAGGTGGGCAGCTGCCTGTGGTGGCTATCAG
CCTGAGTGAATATCCATCTTCCGGTGCCCGCAGCCAACCCACCAGTATTCCTGGCAGCCCTAAG
TTCCAGTCTCCAGTGCCTGCTCCCCGAAACAAGATCGGCACACTCCAGGACCGCCCTCCCAGTC
CTTTCCGTGAGCCCCCAGGCACAGAGCGGGTACTAACAACCAGCCCCTCTCGACAGCTTGTGGG
CAGAACATTTTCAGATGGGTCAGCAACTCGTACCCTCCAGCCACCGGAGAGTCCCCGCTTGGGC
CGGCGGGGCCTGGACAGTATGCGGGAACTGCCCCCGTTGAGTCCATCTCTGTCTCGAAGGGCTC
TGTCCCCACTGCCAGCCCGGACTGCCCCAGATCCCAAACTAAGCAGGGAAGTGGCAGAGAGCCC
CCGGCCCCGGCGCTGGGCAGCCCATGGGACTTCACCTGAGGACTTCTCCCTGACACTAGGAGCA
CGGGGCCGCAGGACTCGGAGTCCTTCGCCCACACTCGGGGAGTCCCTGGCACCTCGCAAGGGCA
GCTTCAGTGGCAGGCTAAGCCCAGCCTACAGTCTGGGCTCTCTTACTGGGGCTTCACCTCGCCA
GAGCCCCCATGCTCAAAGGAAGCTTTCCAGTGGGGACTTGCGGGTGCCCATCCCAAGGGAGAGG
AAAAATAGCATCACGGAGATCAGCGACAATGAGGACGATCTCCTGGAGTACCACAGGCGGCAGC
GCCAAGAGCGGCTCCGGGAGCAGGAGATGGAGAGGCTGGAACGCCAGCGCCTGGAGACCATCCT
GAACCTGTGTGCTGAGTACAGCCGAGCTGACGGGGGACCTGAGACTGGGGAACTGCCCAGTATA
GGAGAGGCCACGGCAGCACTGGCTTTGGCAGGCAGGAGGCCCTCAAGAGGCTTGGCAGGAGCCA
TAGTAGTGTCTGGAAGGAGTGGTGAGGAGTCTGGAGGTGCCTCGCAGCGCCTGTGGGAGAGCAT
GGAGCGCTCTGATGAAGAGAATCTCAAAGAGGAGTGCAGCAGCACAGAGAGCACCCAGCAGGAG
CACGAAGATGCTCCTAGCACGAAGCTCCAAGGAGAGGTGCTGGCTGTGGAAGAGGAGCGGGCTC
AGGTTCTGGGGCGCGTAGAGCAGCTGAAGGTCCGAGTGAAGGAGCTGGAACAGCAGCTGCAGGA
GGCAGCCCGAGAGGCTGAAATGGAGAGAGCACTGCTGCAGGGGGAGAGGGAGGCGGAGCGAGCA
TTGCTGCAGAAGGAACAAAGAGCTATGGACCAGCTGCAGGAGAAGTTGGTGGCCTTGGAGACAG
GCATCCAGAAGGAGAGGGACAAGGAGGCAGACGCTCTAGAGACTGAGACAAAGCTCTTTGAGGA
CCTGGAGTTCCAGCAGCTGGAGCGGGAGAGTCGCGTGGAGGAGGAGCGGGAGTTGGCCGGCCAA
GGGCTGCTTCGCAGCAAGGCTGAGTTGCTGCGCAGCGTGAGCAAGAGAAAGGAGCGCCTAGCTG
TACTGGACAGTCAGGCTGGGCAGATCCGGGCCCAAGCAGTACAGGAGTCAGAGCGTCTGGCCCG
GGAAAAGAATGCTGTCCTGCAGCTACTGCAAAAGGAGAAGGAGAAGCTGACTGTGCTTGAGAGG
AGATATCATTCGCTCACGGGTGGCAGGTCTTTTCCGAAGACCACCTCAACCCTCAAAGAGATGG
AGAAACTGCTGCTCCCTGCTGTAGACTTAGAGCAGTGGTACCAGGAGTTGATGGCCGGGCTGGG
GACTGGCCTTGCTGCAGCCTCCCCTCGCTCCTCTCCCCCGCCTCTGCCTGCCAAAGCTTCTCGT
CAGCTGCAGGTTTACCGCTCCAAGATGAATGGTGACATGGCCAGCCCCCTGCCCAGGACCCGTA
GTGGCCCTCTCCCCTCCTCCTCAGGCTCCTCATCCTCTTCTTCACAGCTCAGCGTGGCTACCCT
GGGCCGTAGTCCTTCCCCAAAGAGTGCCCTGCTCGCCCAGAATGGCACCAGTAGTCTCCCTCGA
AACCTGGCAGCCACGCTGCAGGACATTGAGACCAAGCGCCAGCTGGCCCTACAGCAAAAGGGGC
ACCAAGTGATCGAGGAGCAACGGCGACGGCTGGCTGAGCTGAAGCAGAAAGCAGCGGCAGAGGC
TCAGTGCCAGTGGGATGCCTTGCATGGTGCAGCCGCCTTTCCAGCAGGCCCGTCTGGCTTCCCC
ACACTCATGCACCATTCTATCCTGCACCACCTGCCAGCAGGCAGGGAACGTGGAGAGGAGGGCG
AGCACGCTTACGACACCCTGAGCCTGGAGAGTTCGGACAGCATGGAGACCAGCATCTCTACGGG
GGGCAACTCCGCCTGTTCCCCTGACAACATGTCCAGCGCTAGTGGTCTGGACATGGGCAAGATA
GAGGAAATGGAGAAGATGCTAAAGGAAGCTCACGCGGAGAAGAGCCGGCTCATGGAGTCCAGGG
AGCGGGAGATGGAGCTACGGAGGCAGGCCCTGGAGGAGGAACGTCGGAGGCGGGAGCAAGTGGA
GCGGAGGCTGCAGAGTGAGAGCGCCCGCAGGCAGCAGCTGGTGGAGAAAGAAGTCAAGCTGAGG
GAGAAGCAGTTTTCCCAGGCTCGACCTCTGACACGTTATCTTCCCAACCGGAAGGAGGACTTTG
ATTTGAAGACCCACATAGAGTCGTCAGGCCATGGGGTGGACACCTGCCTACATGTGGTGCTTAG
CAGCAAGGTCTGCCGTGGCTACTTAATCAAGATGGGTGGCAAGATTAAATCGTGGAAGAAGCGC
TGGTTTGTCTTTGACCGGCTGAAGCGCACCCTTTCCTACTATGTGGACAAACACGAGACGAAGC
TGAAGGGGGTCATCTACTTCCAGGCCATCGAGGAAGTGTACTATGACCACCTGCGCAGCGCAGC
CAAGAAAAGGTTTTTCCACTTCACCATGGTGACTGAGAGTCCGAATCCAGCCCTCACCTTCTGT
GTGAAGACCCATGACCGGCTGTACTACATGGTGGCCCCATCTGCAGAGGCCATGCGCATCTGGA
TGGATGTCATCGTCACGGGAGCTGAGGGCTACACTCAATTCATGAACTAACTACCAGGCACCTC
CTGGGTCCCCCAGGTCAGCCCCAGGACACCATGCCCTGCCACTTGCTGCTCTGCTTGTCCCTGG
AGACAGAGGCACACTGGGCACGGGCCACAAAGGGTCAGGATGTAGTTGAGTACCCCAGGGCTTT
TGTGCAAGAAAACGAAATTGTTCTATGAGGAGTTTGGTGCTTGGGAATCAGGCTCCGGTCCCTA
AAGAGCCAGCAGAGAGGAAAGGAAGAGGGAGGGCCTTGTCGCCTCCTGGGAGTCCAGAAGTGCA
GGATTCCCTCCTGGGTCCAGCAGGCTGAAGAGGCATAGCTGAGCTGTGACTCTCAGCTCTGTCC
TGGTACCCACTTAGCCCAGCTTACTTTCTCTCTGTAAAGGACAAATTATGGTACCAGAATCTGC
CAAAGATCCCCTTTCTCATCTCATCCCCTCTACAGGGGTCTGGGGGGTCCTGAGCAGAGCCACG
TGTAGAACAGGGGAGAGGCTCAGGCCTGCACTTCCCGCCCCCGGTCTGCCTCCTTCTCCTCCCA
CCTCCCACTTTTCACTACTTAGCTCAAGGACCAGAGACCTCAAGTGTCATTCTCGAGGTCCAGC
CCCGTAATCATGTTACAAGCCCATCATCCTTGTCTCCATGGTGGCTGCTTCCTCACCATGGTTA
CACACTAATTGCCATGGCCACTCTGTGGCTCTGCCCACTGCTTCGGCTGTGGGCCACATGAGGG
TACATGCCACCCATCTCTCCAACCCAGGCCTGGGGGCCTGTCACATGGTGGGAGGAGATAGAGT
TCCTCCCGGCTGCAGTGTGTCTCCAGCCCCCAGCCCAGCCCTCTCCCTTTTACTGTGCCTTGCT
TAGAGCCAGAAGGGATGATGTCCAGAGATCCAAGACCAGAGAGCAGCATCACTGAGGGGAGAGG
AAGCTAAGAGGTCTGCCCTCCCATTCTGACAGGACTAGTTCCCAATAAGGAACGAGGGTGGTAG
CTCAGAGTGTCTGGAAAGAAGCCTGAGTTGGGAGCAGGGCGGGCAGAAGCAGAGGCCCTGAGCT
GTGGTAACCTCCCTTCAGTTTCCCAAAGGTGACGGGAAAGAAGGACAGAGGATCAAGTCTCCAG
CTGGCTGGCCTCAGCCTTGCGCCTTAACACTAAGCCACCTTCCCTGCCCTCCCCAGCACTGGGC
CCTTGGTTGCTGGGCCTGGCTGGGTGTTTTGCAGTATTTGTAAGCATTTCAGCAGAACAATAAA
AGCATTTTGACTATGTATGTGA

hide sequence

RefSeq Acc Id:

NM_001400943 ⟹ NP_001387872

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,285 (-)	NCBI
mRatBN7.2	8	45,003,543 - 45,051,501 (-)	NCBI

RefSeq Acc Id:

XM_039080760 ⟹ XP_038936688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,325 (-)	NCBI
mRatBN7.2	8	45,003,543 - 45,044,545 (-)	NCBI

RefSeq Acc Id:

XM_039080762 ⟹ XP_038936690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI
mRatBN7.2	8	45,003,543 - 45,044,545 (-)	NCBI

RefSeq Acc Id:

XM_039080764 ⟹ XP_038936692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI
mRatBN7.2	8	45,003,543 - 45,044,545 (-)	NCBI

RefSeq Acc Id:

XM_039080773 ⟹ XP_038936701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI
mRatBN7.2	8	45,003,543 - 45,044,545 (-)	NCBI

RefSeq Acc Id:

XM_063264839 ⟹ XP_063120909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264840 ⟹ XP_063120910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264841 ⟹ XP_063120911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264842 ⟹ XP_063120912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264843 ⟹ XP_063120913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264844 ⟹ XP_063120914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264845 ⟹ XP_063120915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264846 ⟹ XP_063120916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264847 ⟹ XP_063120917

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264848 ⟹ XP_063120918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264849 ⟹ XP_063120919

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264850 ⟹ XP_063120920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264851 ⟹ XP_063120921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264852 ⟹ XP_063120922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264853 ⟹ XP_063120923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264854 ⟹ XP_063120924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264855 ⟹ XP_063120925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264856 ⟹ XP_063120926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,934,824 (-)	NCBI

RefSeq Acc Id:

XM_063264857 ⟹ XP_063120927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,934,824 (-)	NCBI

RefSeq Acc Id:

XM_063264858 ⟹ XP_063120928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264859 ⟹ XP_063120929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264860 ⟹ XP_063120930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264861 ⟹ XP_063120931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264862 ⟹ XP_063120932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264863 ⟹ XP_063120933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264864 ⟹ XP_063120934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264865 ⟹ XP_063120935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264866 ⟹ XP_063120936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264867 ⟹ XP_063120937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264868 ⟹ XP_063120938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264869 ⟹ XP_063120939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264870 ⟹ XP_063120940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264871 ⟹ XP_063120941

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,934,820 (-)	NCBI

RefSeq Acc Id:

XM_063264872 ⟹ XP_063120942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264873 ⟹ XP_063120943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264874 ⟹ XP_063120944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264875 ⟹ XP_063120945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264876 ⟹ XP_063120946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,941,334 (-)	NCBI

RefSeq Acc Id:

XM_063264877 ⟹ XP_063120947

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,325 (-)	NCBI

RefSeq Acc Id:

XM_063264878 ⟹ XP_063120948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,325 (-)	NCBI

RefSeq Acc Id:

XM_063264879 ⟹ XP_063120949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,325 (-)	NCBI

RefSeq Acc Id:

XM_063264880 ⟹ XP_063120950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,948,168 (-)	NCBI

RefSeq Acc Id:

XM_063264881 ⟹ XP_063120951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,934,817 (-)	NCBI

RefSeq Acc Id:

XM_063264882 ⟹ XP_063120952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,900,338 - 53,934,815 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178507	(Get FASTA)	NCBI Sequence Viewer
	NP_001387872	(Get FASTA)	NCBI Sequence Viewer
	XP_038936688	(Get FASTA)	NCBI Sequence Viewer
	XP_038936690	(Get FASTA)	NCBI Sequence Viewer
	XP_038936692	(Get FASTA)	NCBI Sequence Viewer
	XP_038936701	(Get FASTA)	NCBI Sequence Viewer
	XP_063120909	(Get FASTA)	NCBI Sequence Viewer
	XP_063120910	(Get FASTA)	NCBI Sequence Viewer
	XP_063120911	(Get FASTA)	NCBI Sequence Viewer
	XP_063120912	(Get FASTA)	NCBI Sequence Viewer
	XP_063120913	(Get FASTA)	NCBI Sequence Viewer
	XP_063120914	(Get FASTA)	NCBI Sequence Viewer
	XP_063120915	(Get FASTA)	NCBI Sequence Viewer
	XP_063120916	(Get FASTA)	NCBI Sequence Viewer
	XP_063120917	(Get FASTA)	NCBI Sequence Viewer
	XP_063120918	(Get FASTA)	NCBI Sequence Viewer
	XP_063120919	(Get FASTA)	NCBI Sequence Viewer
	XP_063120920	(Get FASTA)	NCBI Sequence Viewer
	XP_063120921	(Get FASTA)	NCBI Sequence Viewer
	XP_063120922	(Get FASTA)	NCBI Sequence Viewer
	XP_063120923	(Get FASTA)	NCBI Sequence Viewer
	XP_063120924	(Get FASTA)	NCBI Sequence Viewer
	XP_063120925	(Get FASTA)	NCBI Sequence Viewer
	XP_063120926	(Get FASTA)	NCBI Sequence Viewer
	XP_063120927	(Get FASTA)	NCBI Sequence Viewer
	XP_063120928	(Get FASTA)	NCBI Sequence Viewer
	XP_063120929	(Get FASTA)	NCBI Sequence Viewer
	XP_063120930	(Get FASTA)	NCBI Sequence Viewer
	XP_063120931	(Get FASTA)	NCBI Sequence Viewer
	XP_063120932	(Get FASTA)	NCBI Sequence Viewer
	XP_063120933	(Get FASTA)	NCBI Sequence Viewer
	XP_063120934	(Get FASTA)	NCBI Sequence Viewer
	XP_063120935	(Get FASTA)	NCBI Sequence Viewer
	XP_063120936	(Get FASTA)	NCBI Sequence Viewer
	XP_063120937	(Get FASTA)	NCBI Sequence Viewer
	XP_063120938	(Get FASTA)	NCBI Sequence Viewer
	XP_063120939	(Get FASTA)	NCBI Sequence Viewer
	XP_063120940	(Get FASTA)	NCBI Sequence Viewer
	XP_063120941	(Get FASTA)	NCBI Sequence Viewer
	XP_063120942	(Get FASTA)	NCBI Sequence Viewer
	XP_063120943	(Get FASTA)	NCBI Sequence Viewer
	XP_063120944	(Get FASTA)	NCBI Sequence Viewer
	XP_063120945	(Get FASTA)	NCBI Sequence Viewer
	XP_063120946	(Get FASTA)	NCBI Sequence Viewer
	XP_063120947	(Get FASTA)	NCBI Sequence Viewer
	XP_063120948	(Get FASTA)	NCBI Sequence Viewer
	XP_063120949	(Get FASTA)	NCBI Sequence Viewer
	XP_063120950	(Get FASTA)	NCBI Sequence Viewer
	XP_063120951	(Get FASTA)	NCBI Sequence Viewer
	XP_063120952	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04705	(Get FASTA)	NCBI Sequence Viewer
	CAA52297	(Get FASTA)	NCBI Sequence Viewer
	EDL95331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046235
	ENSRNOP00000046235.3
	ENSRNOP00000068824
	ENSRNOP00000068824.2
	ENSRNOP00000069330
	ENSRNOP00000069330.1
	ENSRNOP00000087775
	ENSRNOP00000087775.1
	ENSRNOP00000091125
	ENSRNOP00000091125.1
	ENSRNOP00000094780
	ENSRNOP00000094780.1
	ENSRNOP00000096080
	ENSRNOP00000096080.1
	ENSRNOP00000101860
	ENSRNOP00000109174
GenBank Protein	Q63312	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001178507 ⟸ NM_001191578
- Peptide Label:	isoform 1
- UniProtKB:	D3ZNS1 (UniProtKB/TrEMBL), A0A8I6A9F1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATLNRNQLGPGCKTQAVVQKGPLDLIETGQGLKVQTDKPHLVSLGSGRLSTAITLLPLEEGRT VIGSAARDISLQGPGLAPEHCYIENLRGTLTLYPCGNACTIDGLPVRQPTRLTQGCMLCLGQST FLRFNHPAEAKWMKSMIPAGGRAPGSTYSPGSAESESLVNGNHTAQPATRAPPACASHSSLVSS IEKDLQEIMDSLVLEEPGAAGKKPAATSPLSPVANGGRYLLSPPTSPGAMSVGSSYENTSPAFS PLSSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGSRSSESPRLGRKGGH ERPPSPGLRGLLTDSPAATVLAEARRTTESPRLGGQLPVVAISLSEYPSSGARSQPTSIPGSPK FQSPVPAPRNKIGTLQDRPPSPFREPPGTERVLTTSPSRQLVGRTFSDGSATRTLQPPESPRLG RRGLDSMRELPPLSPSLSRRALSPLPARTAPDPKLSREVAESPRPRRWAAHGTSPEDFSLTLGA RGRRTRSPSPTLGESLAPRKGSFSGRLSPAYSLGSLTGASPRQSPHAQRKLSSGDLRVPIPRER KNSITEISDNEDDLLEYHRRQRQERLREQEMERLERQRLETILNLCAEYSRADGGPETGELPSI GEATAALALAGRRPSRGLAGAIVVSGRSGEESGGASQRLWESMERSDEENLKEECSSTESTQQE HEDAPSTKLQGEVLAVEEERAQVLGRVEQLKVRVKELEQQLQEAAREAEMERALLQGEREAERA LLQKEQRAMDQLQEKLVALETGIQKERDKEADALETETKLFEDLEFQQLERESRVEEERELAGQ GLLRSKAELLRSVSKRKERLAVLDSQAGQIRAQAVQESERLAREKNAVLQLLQKEKEKLTVLER RYHSLTGGRSFPKTTSTLKEMEKLLLPAVDLEQWYQELMAGLGTGLAAASPRSSPPPLPAKASR QLQVYRSKMNGDMASPLPRTRSGPLPSSSGSSSSSSQLSVATLGRSPSPKSALLAQNGTSSLPR NLAATLQDIETKRQLALQQKGHQVIEEQRRRLAELKQKAAAEAQCQWDALHGAAAFPAGPSGFP TLMHHSILHHLPAGRERGEEGEHAYDTLSLESSDSMETSISTGGNSACSPDNMSSASGLDMGKI EEMEKMLKEAHAEKSRLMESREREMELRRQALEEERRRREQVERRLQSESARRQQLVEKEVKLR EKQFSQARPLTRYLPNRKEDFDLKTHIESSGHGVDTCLHVVLSSKVCRGYLIKMGGKIKSWKKR WFVFDRLKRTLSYYVDKHETKLKGVIYFQAIEEVYYDHLRSAAKKRFFHFTMVTESPNPALTFC VKTHDRLYYMVAPSAEAMRIWMDVIVTGAEGYTQFMN hide sequence

Ensembl Acc Id:

ENSRNOP00000046235 ⟸ ENSRNOT00000047303

Ensembl Acc Id:

ENSRNOP00000068824 ⟸ ENSRNOT00000078816

Ensembl Acc Id:

ENSRNOP00000069330 ⟸ ENSRNOT00000088034

RefSeq Acc Id:	XP_038936701 ⟸ XM_039080773
- Peptide Label:	isoform X37
- UniProtKB:	A0A0G2JV32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936692 ⟸ XM_039080764
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936690 ⟸ XM_039080762
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936688 ⟸ XM_039080760
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091125 ⟸ ENSRNOT00000100408

Ensembl Acc Id:

ENSRNOP00000087775 ⟸ ENSRNOT00000114831

Ensembl Acc Id:

ENSRNOP00000094780 ⟸ ENSRNOT00000103833

Ensembl Acc Id:

ENSRNOP00000096080 ⟸ ENSRNOT00000096683

RefSeq Acc Id:	NP_001387872 ⟸ NM_001400943
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL), A0A8I6AMV1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120949 ⟸ XM_063264879
- Peptide Label:	isoform X44
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120948 ⟸ XM_063264878
- Peptide Label:	isoform X43
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120947 ⟸ XM_063264877
- Peptide Label:	isoform X42
- UniProtKB:	A0A0G2JV32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120950 ⟸ XM_063264880
- Peptide Label:	isoform X44
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120946 ⟸ XM_063264876
- Peptide Label:	isoform X41
- UniProtKB:	A0A0G2JV32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120945 ⟸ XM_063264875
- Peptide Label:	isoform X40
- UniProtKB:	A0A0G2JV32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120942 ⟸ XM_063264872
- Peptide Label:	isoform X36
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120938 ⟸ XM_063264868
- Peptide Label:	isoform X32
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120940 ⟸ XM_063264870
- Peptide Label:	isoform X34
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120933 ⟸ XM_063264863
- Peptide Label:	isoform X27
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120930 ⟸ XM_063264860
- Peptide Label:	isoform X24
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120929 ⟸ XM_063264859
- Peptide Label:	isoform X23
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120924 ⟸ XM_063264854
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120934 ⟸ XM_063264864
- Peptide Label:	isoform X28
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120932 ⟸ XM_063264862
- Peptide Label:	isoform X26
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120931 ⟸ XM_063264861
- Peptide Label:	isoform X25
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120928 ⟸ XM_063264858
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120922 ⟸ XM_063264852
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120920 ⟸ XM_063264850
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120919 ⟸ XM_063264849
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120917 ⟸ XM_063264847
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120915 ⟸ XM_063264845
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120914 ⟸ XM_063264844
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120944 ⟸ XM_063264874
- Peptide Label:	isoform X39
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120943 ⟸ XM_063264873
- Peptide Label:	isoform X38
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120939 ⟸ XM_063264869
- Peptide Label:	isoform X33
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120937 ⟸ XM_063264867
- Peptide Label:	isoform X31
- UniProtKB:	A0A0G2JV32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120936 ⟸ XM_063264866
- Peptide Label:	isoform X30
- UniProtKB:	A0A0G2JV32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120935 ⟸ XM_063264865
- Peptide Label:	isoform X29
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120925 ⟸ XM_063264855
- Peptide Label:	isoform X20
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120921 ⟸ XM_063264851
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120916 ⟸ XM_063264846
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120923 ⟸ XM_063264853
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120918 ⟸ XM_063264848
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120912 ⟸ XM_063264842
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120913 ⟸ XM_063264843
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120911 ⟸ XM_063264841
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120910 ⟸ XM_063264840
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120909 ⟸ XM_063264839
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120926 ⟸ XM_063264856
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120927 ⟸ XM_063264857
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120941 ⟸ XM_063264871
- Peptide Label:	isoform X35
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120951 ⟸ XM_063264881
- Peptide Label:	isoform X45
- UniProtKB:	A0A8I6A9F1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120952 ⟸ XM_063264882
- Peptide Label:	isoform X46
- UniProtKB:	A0A8I6GJD6 (UniProtKB/TrEMBL), A6J408 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63312-F1-model_v2	AlphaFold	Q63312	1-831	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695911

Promoter ID:

EPDNEW_R6424

Type:

initiation region

Name:

Phldb1_1

Description:

pleckstrin homology-like domain, family B, member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	49,045,141 - 49,045,201	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620878	AgrOrtholog
BioCyc Gene	G2FUF-30706	BioCyc
Ensembl Genes	ENSRNOG00000026985	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000047303	ENTREZGENE
	ENSRNOT00000047303.5	UniProtKB/TrEMBL
	ENSRNOT00000078816	ENTREZGENE
	ENSRNOT00000078816.2	UniProtKB/TrEMBL
	ENSRNOT00000088034	ENTREZGENE
	ENSRNOT00000088034.2	UniProtKB/TrEMBL
	ENSRNOT00000096683	ENTREZGENE
	ENSRNOT00000096683.1	UniProtKB/TrEMBL
	ENSRNOT00000100408	ENTREZGENE
	ENSRNOT00000100408.1	UniProtKB/TrEMBL
	ENSRNOT00000103833	ENTREZGENE
	ENSRNOT00000103833.1	UniProtKB/TrEMBL
	ENSRNOT00000114831	ENTREZGENE
	ENSRNOT00000114831.1	UniProtKB/TrEMBL
	ENSRNOT00000149118	ENTREZGENE
	ENSRNOT00000170158	ENTREZGENE
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.200.20	UniProtKB/TrEMBL
InterPro	FHA_dom	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH-like_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PHLDB1/2/3_PH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMAD_FHA_domain	UniProtKB/TrEMBL
KEGG Report	rno:171434	UniProtKB/TrEMBL
NCBI Gene	171434	ENTREZGENE
PANTHER	PLECKSTRIN HOMOLOGY-LIKE DOMAIN FAMILY B MEMBER 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	FHA	UniProtKB/TrEMBL
	PF00169	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Phldb1	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026985	RatGTEx
SMART	SM00233	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMAD_FHA	UniProtKB/TrEMBL
UniProt	A0A0G2JTS5_RAT	UniProtKB/TrEMBL
	A0A0G2JV32	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A9F1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMV1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJD6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GLX2_RAT	UniProtKB/TrEMBL
	A6J408	ENTREZGENE, UniProtKB/TrEMBL
	D3ZNS1	ENTREZGENE, UniProtKB/TrEMBL
	PHLB1_RAT	UniProtKB/Swiss-Prot
	Q3SWT3_RAT	UniProtKB/TrEMBL
	Q63312	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Phldb1	pleckstrin homology-like domain, family B, member 1	Ll5	LL5 protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Ll5	LL5 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	2.3 kb transcript is detected in pituitary	633318

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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