Spon2 (spondin 2) - Rat Genome Database

Name: Spon2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Spon2 (spondin 2) Rattus norvegicus

Analyze

Symbol:

Spon2

Name:

spondin 2

RGD ID:

708584

Description:

Enables signaling receptor binding activity. Involved in cell adhesion. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Orthologous to human SPON2 (spondin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

F-spondin; LOC100361829; LOC100910790; LOC171569; mindin; mindin precursor; spondin 2, extracellular matrix protein; spondin-2; spondin-2-like

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPON2 (spondin 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Spon2 (spondin 2, extracellular matrix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Spon2 (spondin 2, extracellular matrix protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPON2 (spondin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spon2b (spondin 2b, extracellular matrix protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mspo	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	77,505,695 - 77,518,001 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,511,901 - 77,517,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	81,954,278 - 81,960,081 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,194,828 - 83,200,631 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	79,640,141 - 79,645,944 (+)	NCBI	Rnor_WKY
Rnor_6.0	14	82,815,158 - 82,824,529 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,818,663 - 82,824,599 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	83,501,025 - 83,510,376 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	14	82,975,275 - 82,978,160 (-)	NCBI
Celera	14	76,428,066 - 76,433,860 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cherubism (ISO)

mucopolysaccharidosis I (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chloroethene (ISO)

chloroprene (EXP,ISO)

chromium(6+) (ISO)

chrysene (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (EXP)

clofibrate (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fulvestrant (ISO)

furan (ISO)

graphene oxide (ISO)

leflunomide (EXP)

lipopolysaccharide (ISO)

methotrexate (ISO)

mitoxantrone (ISO)

monosodium L-glutamate (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-ethyl-N-nitrosourea (ISO)

naphthalene (ISO)

nickel atom (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

ozone (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

pentanal (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propanal (ISO)

Ptaquiloside (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (EXP,ISO)

simvastatin (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

topotecan (EXP)

tributylstannane (EXP)

trichloroethene (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IBA,IDA)

cellular response to lipopolysaccharide (ISO)

defense response to bacterium (ISO)

defense response to fungus (ISO)

defense response to virus (ISO)

induction of bacterial agglutination (ISO)

innate immune response (ISO)

mast cell mediated immunity (ISO)

opsonization (ISO)

positive regulation of interleukin-6 production (ISO)

positive regulation of macrophage cytokine production (ISO)

positive regulation of tumor necrosis factor production (ISO)

response to lipopolysaccharide (ISO)

Cellular Component

extracellular matrix (IBA,ISO,TAS)

extracellular space (ISO)

Molecular Function

antigen binding (ISO)

lipopolysaccharide binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

signaling receptor binding (IDA)

References

References - curated

#	Reference Title	Reference Citation
1.	F-spondin and mindin: two structurally and functionally related genes expressed in the hippocampus that promote outgrowth of embryonic hippocampal neurons.	Feinstein Y, etal., Development 1999 Aug;126(16):3637-48.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:14691481	PMID:15489334	PMID:16300627	PMID:16736493	PMID:18780763	PMID:19056867	PMID:19903741	PMID:22592270	PMID:23533145	PMID:24006456	PMID:25751394

Genomics

Comparative Map Data

Spon2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	77,505,695 - 77,518,001 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,511,901 - 77,517,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	81,954,278 - 81,960,081 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,194,828 - 83,200,631 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	79,640,141 - 79,645,944 (+)	NCBI	Rnor_WKY
Rnor_6.0	14	82,815,158 - 82,824,529 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,818,663 - 82,824,599 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	83,501,025 - 83,510,376 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	14	82,975,275 - 82,978,160 (-)	NCBI
Celera	14	76,428,066 - 76,433,860 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

SPON2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	1,166,932 - 1,208,844 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	1,166,932 - 1,208,962 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	1,160,720 - 1,202,632 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,150,723 - 1,156,597 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	1,150,552 - 1,156,427	NCBI
Celera	4	1,093,221 - 1,099,481 (-)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,129,322 - 1,171,336 (-)	NCBI		HuRef
CHM1_1	4	1,160,505 - 1,202,404 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	1,165,604 - 1,208,039 (-)	NCBI		T2T-CHM13v2.0

Spon2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	33,370,862 - 33,375,596 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	33,355,528 - 33,375,799 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	33,213,518 - 33,218,254 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,198,184 - 33,218,455 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	33,556,167 - 33,560,887 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	33,530,375 - 33,535,040 (-)	NCBI		MGSCv36	mm8
Celera	5	30,692,605 - 30,697,322 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI

Spon2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	596,829 - 604,051 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	598,840 - 603,390 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPON2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	1,195,307 - 1,201,168 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	1,195,848 - 1,200,400 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	1,309,473 - 1,351,529 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SPON2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	91,411,245 - 91,421,245 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	93,879,686 - 93,886,426 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	92,411,007 - 92,417,759 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	91,584,382 - 91,591,120 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	91,637,257 - 91,643,961 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	92,021,312 - 92,028,059 (+)	NCBI		UU_Cfam_GSD_1.0

Spon2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	68,385,733 - 68,391,985 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	22,087,394 - 22,093,723 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936477	22,087,450 - 22,093,677 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPON2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	447,180 - 450,538 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	447,176 - 450,829 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SPON2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	47,609,170 - 47,615,507 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	47,609,922 - 47,615,496 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	3,986,077 - 3,992,451 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spon2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	26,045,493 - 26,053,476 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	26,045,617 - 26,049,951 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spon2
48 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	409
Count of miRNA genes:	235
Interacting mature miRNAs:	273
Transcripts:	ENSRNOT00000008262
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat

Markers in Region

AI504350

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	77,517,626 - 77,517,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	82,824,155 - 82,824,254	NCBI	Rnor6.0
Rnor_5.0	14	83,510,002 - 83,510,101	UniSTS	Rnor5.0
Celera	14	76,433,486 - 76,433,585	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium					2		2	2			15	11	2
Low	3	43	57	41	17	41	6	9	74	34	19		6
Below cutoff										1	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_138533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000008262 ⟹ ENSRNOP00000008262

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	77,511,901 - 77,517,996 (+)	Ensembl
Rnor_6.0 Ensembl	14	82,818,663 - 82,824,599 (+)	Ensembl

RefSeq Acc Id:

NM_138533 ⟹ NP_612542

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	77,512,207 - 77,518,001 (+)	NCBI
Rnor_6.0	14	82,818,735 - 82,824,529 (+)	NCBI
Rnor_5.0	14	83,501,025 - 83,510,376 (+)	NCBI
Celera	14	76,428,066 - 76,433,860 (+)	RGD

Sequence:

show sequence

CTCCTGCCACAGAAAAGCTTCTTGCTTCCTGGTCTCAAGCCCCTTCTTTCTGGGACCAGGCACT
GAGGCAGCAGACAGGAAGAGCTGGGGCCCGTCTGCTGGCCAGAGGCACTAATCTTGGGCATAAA
CAGGATCTCCAAGCTCTGGGACCAGTCCTGCAGCTGACAGCCCAGCAGCCTGCCCCTGACGCTC
TTGCTAGGTGATGGAAAACGTGAGTTTTTCCCTGGACAGAACTCTTTGGGTCTTCCTCCTGGCC
ATGCTAGGCTCCACCGCAGGCCAGCCGCTGGGGGGAGAATCTGTCTGCACAGCCCGGCCTCTGG
CTAGATACAGCATCACTTTCACTGGCAAGTGGAGCCAGACAGCATTTCCCAAGCAGTATCCTCT
GTTCCGGCCCCCTGCACAGTGGTCCTCTCTGCTGGGGGCAGCACACAGCTCTGACTACAGCATG
TGGCGGAAGAATGAGTACGTCAGCAATGGGCTGAGGGACTTCGCTGAGCGTGGTGAGGCCTGGG
CACTGATGAAAGAGATCGAAGCAGCAGGAGAGAAGCTCCAGAGTGTGCACGCGGTATTCTCGGC
TCCCGCCGTGCCTAGTGGTACCGGGCAGACTTCTGCAGAGTTAGAGGTGCACCCTAGGCACTCG
CTGGTGTCCTTCGTGGTACGCATTGTCCCCAGTCCGGACTGGTTTGTGGGCATCGACAGTCTGG
ACCTGTGCGAGGGAGGCCGCTGGAAGGAGCAGGTGGTCCTTGATCTTTACCCACACGATGCAGG
GACAGACAGTGGCTTCACCTTCTCCTCCCCCAACTTTGCAACCATCCCACAAGACACAGTGACT
GAGATAACCGCCTCATCGCCCAGTCACCCAGCCAACTCATTCTACTACCCACGCCTCAAGTCCT
TGCCACCCATTGCCAAAGTGACCTTCGTGCGGCTACGGCAGAGTCCCAGAGCCTTTGCCCCACC
TTCCCTGGACCTGGCCAGCAGAGGAAATGAAATCGTTGACAGCCTCTCAGTTCCAGAGACACCG
CTGGACTGTGAAGTTTCCCTGTGGTCATCCTGGGGACTGTGCGGAGGGCCATGTGGAAAGTTGG
GAGCCAAGAGCAGAACTCGCTATGTGCGTGTTCAGCCTGCTAACAATGGGACTCCCTGTCCCGA
GCTTGAAGAAGAGGCTGAGTGTGCCCCAGATAACTGTGTCTAAACCCAGACCCCAGTAGCCAGC
CCTTAGGATCCCTCGAGCCTTGGACTCTGATCTGGGCCACAAAGTGTTTTCAGGAGGCCCGTGT
AGGCAGGGATGAGAGCATGGGCAATTTTGCACCATTTCCCACCATTCCTGGGTTGACAGATGGT
CTTGATACAGAGGCCCTCAGTGACAGGTAAGACACAGACTGCCTCTCCCACTGTGTGATTCCTG
AGGATCATGGGTTTGATCTACATAAATTCCTTTGTAATTTATTACTGTGGTGGGAGGGAGGCTG
CCTTTGATACAGAGAGAAGGCATTCCAGGAACAGGTGAGAGGATGCCCTAAGCCTGTGAGCCCC
ACAACCACACTGCTGTCAGATACCTCAGACCTGCTGCCACTGCACTTGCTCCTGGAGGCCAAGA
AGTCAACCTTCACACCACTCTTGAGCTCACCCTGGGGTGACCACAGGAGGGGCAAATGAAGAGG
GGCAGTTTTGGAAACTTGGAGCTTTTGTGTCACTGATCCCTTTGCATTCAAATAAAGGTTATGT
TCCCGAAAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017599062 ⟹ XP_017454551

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	77,505,695 - 77,518,001 (+)	NCBI
Rnor_6.0	14	82,815,158 - 82,824,529 (+)	NCBI

Sequence:

show sequence

CTCTCTCCTCTGTCTACAACAAAAGCCTTCCTCTTAACCATACCGTTGTGTGGTCATGTCTTCA
CTTTAGACACCACACTCTGGTCCTGTCCAATTATCTTTGTCTGTTTCCTTGTTGTTTTGATGGA
GAGAGAACTCCCCCCATTTTTGCTGAAGTCCTGGCACCTTACCTCCATTGTGAAGAGACACCAT
GGCAAGCCTTACTAGAAATGGCCAGGACTCTTTTATTTTCTACTATGGGGGAATCTCATGAGAA
GAATTTTGTGGAATGGTTCTCTCTTTTCACCTTCACATGGCTTTAGGGATTGAACGTATGTCGT
TAGTCTTTAAACAGCCATTTCACTGCCCAGAGTCACATTTAAAGGAGGCCAACTGTTGCACCAT
AGAAGGGGACAGTCTGCCTTAGAGCCACACGGCACTGACAGGTCTCCTGATCTGTCACGTGCAG
GCATGGCCTGGTCTCCTATCCATGTCTTGTAGAGACCTGCTGTGCTGACTGGGGAGGACACATG
TTCAGCGCTCCCTCTGGGGCTGCATAGTTGTGGTGCCCACACTCATGCATGGAGGGCAGCTGCA
AGCAGCCCCCCTTACATGATCTCAGAAACTAAAGGATGTGGATGGGGTGGGTGCTTGGGTGCTG
GGGCTTGTTGGCTCTCACTTTCTTCCTGGGTGTTTTCTAAGAAAGCTAAGGCCACGAGCTGAAC
CCAGGGCTTGCTCACTGGATAGAGTTCAGGCCCTGAGTCAGAGGTGCTATTTGAAATCTGACCT
AGAATAGTGACATGGGAGACAGGAAAAGAGGGAGGGAGAACAGGAAGGAGGAAGGCAGCAATGC
CCTGTGGGACAAGTTCCTGAGCTGCTTGGGCCAGCCGCCAACTCTGCAGCCCAGCTAACTGCAT
AGCTCTAGAAGTTGTACCCAGAAGCCTCATCCAGAGTCTGCCTTCAGCCTACTCATGCCTCTGT
GAGCATGTAACATCCTGCAGCAAAACTTAGGCTGCTCACAAGGCTGGGCTGGATTTCCCTCTCT
GCAGGAGGTGGAAAATAAAATGGGCTGAAGGGCTAGTATGGGTGAGAAGATGCTCCTCTGGGCT
GGGCTGGCTGCAGAGCCTTCCCGGAAACCTCGAGCCAGCTTGGAAGGGCCCTCTCTAGGTAGAG
GGACTGCAAGCAGAGGGAACAGTGCTGGGAATGTTCAGTGCCCAGTAGAAAGGGGAAGGGGGAG
CTTGAGAGAGCCAGTCTGGCGGCCCCATTCTGGGGATACTGCCCAGGGGTGGATGCAGCCTCTA
GAGAGCATTATATAGAGAGCACGCATCACGGGGCCAGGCTGGAGCCAATGAGCAGCGAGCGTGA
GTCTGTGGACCTGGCATGCTTGGTATCTGAGGGTTTTTCATTCACAGCTGGGGCACCTGGCAGG
CAGGCTTGCCCGAAGCCTGTGTGCACTGCAGGAGACAGCCATTCTGTGGGTGGGGATCCCAAGC
ACACGTGGCCTGGGAGCATGTCTCTTCCCAGGTCAGGCCTAGGGGCCTGTGCCACACCTAAGGA
GGAGTCTAGGCCCTGAAAGGACCATTGTTACACCATGGCAAAGTCCTCCCCATGTCCCATCATG
TCCATGAAAATTCTCAGGGATTTTCATTTTTAGGGGACACTGCTACCGCTAAAGGAATTTCTTG
CCTGGCTATCATCCTGCCCAGCCCTCCTTGGGCAGCCCCGACTTGGCAGCTGCAGCTCTGCTTG
GAAGAGACTGGCGTTGGCTCGTTCTCGTTGCCAAACCAGTGGATACCCACGTCTCAAAGACTTC
ATGGGCTTGAGGCTGAGAGAGAAGCTTCCTGATACCCCGGGCTGGGGCTGTTGACTACTACCTT
GTCGTGTGGAATGGAGTGAGCCTTAGGGTTTCCGCTGAGCATAGGGCAGGGGGTGGACTGAAGT
TATTCACAGTGTATCTTCTTCCTAGGAGCCTAAGCTCTGGTGGATGGAGACTGGCCTGGCTAGC
TCTAGGTACACATCTGTGACTGCTCTAAGGACTGCATCCACACAGCACAATCAGCACTGGCCCC
TGCATCCCTTCTCCAGAAACACCGCACTGAGGCAGCAGACAGGAAGAGCTGGGGCCCGTCTGCT
GGCCAGAGGCACTAATCTTGGGCATAAACAGGATCTCCAAGCTCTGGGACCAGTCCTGCAGCTG
ACAGCCCAGCAGCCTGCCCCTGACGCTCTTGCTAGGTGATGGAAAACGTGAGTTTTTCCCTGGA
CAGAACTCTTTGGGTCTTCCTCCTGGCCATGCTAGGCTCCACCGCAGGCCAGCCGCTGGGGGGA
GAATCTGTCTGCACAGCCCGGCCTCTGGCTAGATACAGCATCACTTTCACTGGCAAGTGGAGCC
AGACAGCATTTCCCAAGCAGTATCCTCTGTTCCGGCCCCCTGCACAGTGGTCCTCTCTGCTGGG
GGCAGCACACAGCTCTGACTACAGCATGTGGCGGAAGAATGAGTACGTCAGCAATGGGCTGAGG
GACTTCGCTGAGCGTGGTGAGGCCTGGGCACTGATGAAAGAGATCGAAGCAGCAGGAGAGAAGC
TCCAGAGTGTGCACGCGGTATTCTCGGCTCCCGCCGTGCCTAGTGGTACCGGGCAGACTTCTGC
AGAGTTAGAGGTGCACCCTAGGCACTCGCTGGTGTCCTTCGTGGTACGCATTGTCCCCAGTCCG
GACTGGTTTGTGGGCATCGACAGTCTGGACCTGTGCGAGGGAGGCCGCTGGAAGGAGCAGGTGG
TCCTTGATCTTTACCCACACGATGCAGGGACAGACAGTGGCTTCACCTTCTCCTCCCCCAACTT
TGCAACCATCCCACAAGACACAGTGACTGAGATAACCGCCTCATCGCCCAGTCACCCAGCCAAC
TCATTCTACTACCCACGCCTCAAGTCCTTGCCACCCATTGCCAAAGTGACCTTCGTGCGGCTAC
GGCAGAGTCCCAGAGCCTTTGCCCCACCTTCCCTGGACCTGGCCAGCAGAGGAAATGAAATCGT
TGACAGCCTCTCAGTTCCAGAGACACCGCTGGACTGTGAAGTTTCCCTGTGGTCATCCTGGGGA
CTGTGCGGAGGGCCATGTGGAAAGTTGGGAGCCAAGAGCAGAACTCGCTATGTGCGTGTTCAGC
CTGCTAACAATGGGACTCCCTGTCCCGAGCTTGAAGAAGAGGCTGAGTGTGCCCCAGATAACTG
TGTCTAAACCCAGACCCCAGTAGCCAGCCCTTAGGATCCCTCGAGCCTTGGACTCTGATCTGGG
CCACAAAGTGTTTTCAGGAGGCCCGTGTAGGCAGGGATGAGAGCATGGGCAATTTTGCACCATT
TCCCACCATTCCTGGGTTGACAGATGGTCTTGATACAGAGGCCCTCAGTGACAGGTAAGACACA
GACTGCCTCTCCCACTGTGTGATTCCTGAGGATCATGGGTTTGATCTACATAAATTCCTTTGTA
ATTTATTACTGTGGTGGGAGGGAGGCTGCCTTTGATACAGAGAGAAGGCATTCCAGGAACAGGT
GAGAGGATGCCCTAAGCCTGTGAGCCCCACAACCACACTGCTGTCAGATACCTCAGACCTGCTG
CCACTGCACTTGCTCCTGGAGGCCAAGAAGTCAACCTTCACACCACTCTTGAGCTCACCCTGGG
GTGACCACAGGAGGGGCAAATGAAGAGGGGCAGTTTTGGAAACTTGGAGCTTTTGTGTCACTGA
TCCCTTTGCATTCAAATAAAGGTTATGTTCCCGAAAAATGTCA

hide sequence

RefSeq Acc Id:

XM_017599063 ⟹ XP_017454552

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	77,510,734 - 77,518,001 (+)	NCBI
Rnor_6.0	14	82,817,235 - 82,824,529 (+)	NCBI

Sequence:

show sequence

GTCCTGGTCCTCGCAGCCCCTCTCCAGCAACACTGTGTGCAACCCGGTCCTGTGGCTCTGGAAC
TCTAGTCAGATGTGAGAAGCCTGGATCCTGTGACAAGCATGACCCATAGCTGGTCCCGGAACAC
AAGACAAGTTAGGGGGAAAAAGGCCTCTGAACGAAAGGTCGGCGTTTGTGTGGAGTGGTAACGA
TCCTTGAGGGTCCACAAGGTCAACAGAAGAGCATCTGTCTATGCCTGTTGTCTGTTGAGGGACA
GTGGGATTTTTCGAGCGGCCCTAGGACACCTTTGTCTGAAAAGGAGAAGAAAGTCCTTGTTCTG
ATGTCTACTCAGGCTTAATTGACCTCACGGCTTCATTCTGCATCAGTTGGATGGGCTGTACTAG
GCACTGAGGCAGCAGACAGGAAGAGCTGGGGCCCGTCTGCTGGCCAGAGGCACTAATCTTGGGC
ATAAACAGGATCTCCAAGCTCTGGGACCAGTCCTGCAGCTGACAGCCCAGCAGCCTGCCCCTGA
CGCTCTTGCTAGGTGATGGAAAACGTGAGTTTTTCCCTGGACAGAACTCTTTGGGTCTTCCTCC
TGGCCATGCTAGGCTCCACCGCAGGCCAGCCGCTGGGGGGAGAATCTGTCTGCACAGCCCGGCC
TCTGGCTAGATACAGCATCACTTTCACTGGCAAGTGGAGCCAGACAGCATTTCCCAAGCAGTAT
CCTCTGTTCCGGCCCCCTGCACAGTGGTCCTCTCTGCTGGGGGCAGCACACAGCTCTGACTACA
GCATGTGGCGGAAGAATGAGTACGTCAGCAATGGGCTGAGGGACTTCGCTGAGCGTGGTGAGGC
CTGGGCACTGATGAAAGAGATCGAAGCAGCAGGAGAGAAGCTCCAGAGTGTGCACGCGGTATTC
TCGGCTCCCGCCGTGCCTAGTGGTACCGGGCAGACTTCTGCAGAGTTAGAGGTGCACCCTAGGC
ACTCGCTGGTGTCCTTCGTGGTACGCATTGTCCCCAGTCCGGACTGGTTTGTGGGCATCGACAG
TCTGGACCTGTGCGAGGGAGGCCGCTGGAAGGAGCAGGTGGTCCTTGATCTTTACCCACACGAT
GCAGGGACAGACAGTGGCTTCACCTTCTCCTCCCCCAACTTTGCAACCATCCCACAAGACACAG
TGACTGAGATAACCGCCTCATCGCCCAGTCACCCAGCCAACTCATTCTACTACCCACGCCTCAA
GTCCTTGCCACCCATTGCCAAAGTGACCTTCGTGCGGCTACGGCAGAGTCCCAGAGCCTTTGCC
CCACCTTCCCTGGACCTGGCCAGCAGAGGAAATGAAATCGTTGACAGCCTCTCAGTTCCAGAGA
CACCGCTGGACTGTGAAGTTTCCCTGTGGTCATCCTGGGGACTGTGCGGAGGGCCATGTGGAAA
GTTGGGAGCCAAGAGCAGAACTCGCTATGTGCGTGTTCAGCCTGCTAACAATGGGACTCCCTGT
CCCGAGCTTGAAGAAGAGGCTGAGTGTGCCCCAGATAACTGTGTCTAAACCCAGACCCCAGTAG
CCAGCCCTTAGGATCCCTCGAGCCTTGGACTCTGATCTGGGCCACAAAGTGTTTTCAGGAGGCC
CGTGTAGGCAGGGATGAGAGCATGGGCAATTTTGCACCATTTCCCACCATTCCTGGGTTGACAG
ATGGTCTTGATACAGAGGCCCTCAGTGACAGGTAAGACACAGACTGCCTCTCCCACTGTGTGAT
TCCTGAGGATCATGGGTTTGATCTACATAAATTCCTTTGTAATTTATTACTGTGGTGGGAGGGA
GGCTGCCTTTGATACAGAGAGAAGGCATTCCAGGAACAGGTGAGAGGATGCCCTAAGCCTGTGA
GCCCCACAACCACACTGCTGTCAGATACCTCAGACCTGCTGCCACTGCACTTGCTCCTGGAGGC
CAAGAAGTCAACCTTCACACCACTCTTGAGCTCACCCTGGGGTGACCACAGGAGGGGCAAATGA
AGAGGGGCAGTTTTGGAAACTTGGAGCTTTTGTGTCACTGATCCCTTTGCATTCAAATAAAGGT
TATGTTCCCGAAAAATGTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_612542	(Get FASTA)	NCBI Sequence Viewer
	XP_017454551	(Get FASTA)	NCBI Sequence Viewer
	XP_017454552	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78734	(Get FASTA)	NCBI Sequence Viewer
	EDM00132	(Get FASTA)	NCBI Sequence Viewer
	Q9WV75	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_612542 ⟸ NM_138533
- Peptide Label:	precursor
- UniProtKB:	Q9WV75 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MENVSFSLDRTLWVFLLAMLGSTAGQPLGGESVCTARPLARYSITFTGKWSQTAFPKQYPLFRP PAQWSSLLGAAHSSDYSMWRKNEYVSNGLRDFAERGEAWALMKEIEAAGEKLQSVHAVFSAPAV PSGTGQTSAELEVHPRHSLVSFVVRIVPSPDWFVGIDSLDLCEGGRWKEQVVLDLYPHDAGTDS GFTFSSPNFATIPQDTVTEITASSPSHPANSFYYPRLKSLPPIAKVTFVRLRQSPRAFAPPSLD LASRGNEIVDSLSVPETPLDCEVSLWSSWGLCGGPCGKLGAKSRTRYVRVQPANNGTPCPELEE EAECAPDNCV hide sequence

RefSeq Acc Id:	XP_017454551 ⟸ XM_017599062
- Peptide Label:	isoform X1
- UniProtKB:	Q9WV75 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MENVSFSLDRTLWVFLLAMLGSTAGQPLGGESVCTARPLARYSITFTGKWSQTAFPKQYPLFRP PAQWSSLLGAAHSSDYSMWRKNEYVSNGLRDFAERGEAWALMKEIEAAGEKLQSVHAVFSAPAV PSGTGQTSAELEVHPRHSLVSFVVRIVPSPDWFVGIDSLDLCEGGRWKEQVVLDLYPHDAGTDS GFTFSSPNFATIPQDTVTEITASSPSHPANSFYYPRLKSLPPIAKVTFVRLRQSPRAFAPPSLD LASRGNEIVDSLSVPETPLDCEVSLWSSWGLCGGPCGKLGAKSRTRYVRVQPANNGTPCPELEE EAECAPDNCV hide sequence

RefSeq Acc Id:	XP_017454552 ⟸ XM_017599063
- Peptide Label:	isoform X1
- UniProtKB:	Q9WV75 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MENVSFSLDRTLWVFLLAMLGSTAGQPLGGESVCTARPLARYSITFTGKWSQTAFPKQYPLFRP PAQWSSLLGAAHSSDYSMWRKNEYVSNGLRDFAERGEAWALMKEIEAAGEKLQSVHAVFSAPAV PSGTGQTSAELEVHPRHSLVSFVVRIVPSPDWFVGIDSLDLCEGGRWKEQVVLDLYPHDAGTDS GFTFSSPNFATIPQDTVTEITASSPSHPANSFYYPRLKSLPPIAKVTFVRLRQSPRAFAPPSLD LASRGNEIVDSLSVPETPLDCEVSLWSSWGLCGGPCGKLGAKSRTRYVRVQPANNGTPCPELEE EAECAPDNCV hide sequence

RefSeq Acc Id:

ENSRNOP00000008262 ⟸ ENSRNOT00000008262

Protein Domains

Spondin TSP type-1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WV75-F1-model_v2	AlphaFold	Q9WV75	1-330	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708584	AgrOrtholog
BioCyc Gene	G2FUF-15253	BioCyc
Ensembl Genes	ENSRNOG00000006033	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000008262	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008262	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	2.20.100.10	UniProtKB/Swiss-Prot
	2.60.40.2130	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7121065	IMAGE-MGC_LOAD
InterPro	Spondin_N	UniProtKB/Swiss-Prot
	Spondin_N_sf	UniProtKB/Swiss-Prot
	TSP1_rpt	UniProtKB/Swiss-Prot
	TSP1_rpt_sf	UniProtKB/Swiss-Prot
	TSP1_spondin_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:171569	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93184	IMAGE-MGC_LOAD
NCBI Gene	171569	ENTREZGENE
Pfam	Spond_N	UniProtKB/Swiss-Prot
	TSP1_spondin	UniProtKB/Swiss-Prot
PhenoGen	Spon2	PhenoGen
PROSITE	SPONDIN	UniProtKB/Swiss-Prot
	TSP1	UniProtKB/Swiss-Prot
SMART	TSP1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF82895	UniProtKB/Swiss-Prot
UniProt	Q9WV75	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Spon2	spondin 2	LOC100910790	spondin-2-like	Data Merged	737654	PROVISIONAL
2016-01-21	Spon2	spondin 2	Spon2	spondin 2, extracellular matrix protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-17	Spon2	spondin 2, extracellular matrix protein	LOC100361829	spondin-2-like	Data Merged	737654	PROVISIONAL
2012-07-05	LOC100910790	spondin-2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-05	LOC100361829	spondin-2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-07-08	Spon2	spondin 2, extracellular matrix protein	LOC171569	F-spondin	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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