Ank3 (ankyrin 3) - Rat Genome Database

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Gene: Ank3 (ankyrin 3) Rattus norvegicus
Analyze
Symbol: Ank3
Name: ankyrin 3
RGD ID: 620157
Description: Enables several functions, including cadherin binding activity; spectrin binding activity; and transmembrane transporter binding activity. Involved in several processes, including clustering of voltage-gated sodium channels; positive regulation of protein targeting to membrane; and regulation of ion transport. Located in several cellular components, including Z disc; main axon; and spectrin-associated cytoskeleton. Biomarker of status epilepticus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ANK3 (ankyrin 3); INTERACTS WITH (+)-pilocarpine; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ANK-3; ankyrin 3 (G); ankyrin 3, epithelial; ankyrin 3, epithelial isoform g; ankyrin 3, node of Ranvier; ankyrin 3, node of Ranvier (ankyrin G); ankyrin-3; ankyrin-G
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22018,602,267 - 19,225,831 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2018,602,786 - 19,086,300 (-)Ensembl
Rnor_6.02019,948,767 - 20,480,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2020,105,047 - 20,480,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02022,087,201 - 22,609,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42019,328,684 - 19,828,196 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12019,342,749 - 19,991,423 (-)NCBI
Celera2019,989,307 - 20,463,938 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
acetamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-carotene  (ISO)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
chrysene  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clothianidin  (ISO)
cobalt dichloride  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furan  (EXP)
gemcitabine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
menadione  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
nickel atom  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
PD 0325901  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
raloxifene  (EXP)
razoxane  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
1. Bailey SJ, etal., J Neurosci. 2003 Mar 15;23(6):2102-11.
2. Bongenhielm U, etal., Exp Neurol. 2000 Aug;164(2):384-95.
3. Bouzidi M, etal., J Biol Chem 2002 Aug 9;277(32):28996-9004.
4. Chen Z, etal., Brain Res. 2009 May 13;1270:112-20. Epub 2009 Mar 21.
5. Devaux J, etal., J Neurosci. 2003 Jun 1;23(11):4509-18.
6. Dzhashiashvili Y, etal., J Cell Biol. 2007 Jun 4;177(5):857-70.
7. Gagelin C, etal., J Biol Chem 2002 Apr 12;277(15):12978-87.
8. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Geisler SB, etal., J Biomed Biotechnol. 2010;2010:624719. Epub 2010 May 12.
10. Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
11. Hedstrom KL, etal., J Cell Biol. 2007 Aug 27;178(5):875-86. doi: 10.1083/jcb.200705119. Epub 2007 Aug 20.
12. Jenkins SM and Bennett V, J Cell Biol. 2001 Nov 26;155(5):739-46. Epub 2001 Nov 26.
13. Kizhatil K and Bennett V, J Biol Chem. 2004 Apr 16;279(16):16706-14. Epub 2004 Feb 1.
14. Kizhatil K, etal., J Biol Chem. 2007 Sep 7;282(36):26552-61. Epub 2007 Jul 9.
15. Kordeli E, etal., J Cell Sci 1998 Aug;111 ( Pt 15):2197-207.
16. Kosaka T, etal., Neurosci Res. 2008 Nov;62(3):176-86. Epub 2008 Aug 22.
17. Leterrier C, etal., Proc Natl Acad Sci U S A. 2011 May 24;108(21):8826-31. Epub 2011 May 6.
18. Lowe JS, etal., J Cell Biol. 2008 Jan 14;180(1):173-86. Epub 2008 Jan 7.
19. Maiweilidan Y, etal., Exp Cell Res. 2011 Apr 1;317(6):724-36. doi: 10.1016/j.yexcr.2011.01.002. Epub 2011 Jan 9.
20. MGD data from the GO Consortium
21. Mohler PJ, etal., Proc Natl Acad Sci U S A. 2004 Dec 14;101(50):17533-8. Epub 2004 Dec 3.
22. NCBI rat LocusLink and RefSeq merged data July 26, 2002
23. OMIM Disease Annotation Pipeline
24. Pan Z, etal., J Neurosci. 2006 Mar 8;26(10):2599-613.
25. Papandréou MJ, etal., J Neurochem. 2015 Aug;134(3):527-37. doi: 10.1111/jnc.13158. Epub 2015 Jun 22.
26. Reeves TM, etal., Brain Pathol. 2010 Nov;20(6):1055-68. doi: 10.1111/j.1750-3639.2010.00412.x. Epub 2010 Jun 15.
27. RGD automated data pipeline
28. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
29. RGD automated import pipeline for gene-chemical interactions
30. Sato PY, etal., Circ Res. 2011 Jul 8;109(2):193-201. Epub 2011 May 26.
31. Thevananther S, etal., J Biol Chem 1998 Sep 11;273(37):23952-8.
32. Zhang X and Bennett V, J Cell Biol 1998 Sep 21;142(6):1571-81.
Additional References at PubMed
PMID:7615634   PMID:9832557   PMID:10995443   PMID:11222639   PMID:12477932   PMID:14593108   PMID:15479642   PMID:15611082   PMID:15797713   PMID:15953600   PMID:17234591   PMID:17311847  
PMID:18094255   PMID:19064667   PMID:20188654   PMID:20877009   PMID:21893642   PMID:22623668   PMID:22871113   PMID:23903368   PMID:25374361   PMID:25383926   PMID:25552556   PMID:25874799  
PMID:26187182   PMID:26671463   PMID:27046665   PMID:27356871   PMID:28841137   PMID:29476059   PMID:29956586   PMID:31934859  


Genomics

Comparative Map Data
Ank3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22018,602,267 - 19,225,831 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2018,602,786 - 19,086,300 (-)Ensembl
Rnor_6.02019,948,767 - 20,480,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2020,105,047 - 20,480,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02022,087,201 - 22,609,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42019,328,684 - 19,828,196 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12019,342,749 - 19,991,423 (-)NCBI
Celera2019,989,307 - 20,463,938 (-)NCBICelera
Cytogenetic Map20p11NCBI
ANK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1060,026,298 - 60,733,490 (-)EnsemblGRCh38hg38GRCh38
GRCh381060,026,298 - 60,733,528 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371061,786,056 - 62,493,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361061,458,165 - 61,819,494 (-)NCBINCBI36hg18NCBI36
Build 341061,458,164 - 61,819,494NCBI
Celera1055,053,717 - 55,415,045 (-)NCBI
Cytogenetic Map10q21.2NCBI
HuRef1055,773,261 - 56,482,641 (-)NCBIHuRef
CHM1_11062,067,860 - 62,775,531 (-)NCBICHM1_1
Ank3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391069,234,608 - 69,863,266 (+)NCBIGRCm39mm39
GRCm39 Ensembl1069,234,603 - 69,863,268 (+)Ensembl
GRCm381069,533,486 - 70,027,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1069,398,773 - 70,027,438 (+)EnsemblGRCm38mm10GRCm38
MGSCv371068,996,456 - 69,490,184 (+)NCBIGRCm37mm9NCBIm37
MGSCv361068,929,206 - 69,420,423 (+)NCBImm8
Celera1070,624,257 - 71,118,490 (+)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.1NCBI
Ank3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542513,522,233 - 13,851,286 (-)NCBIChiLan1.0ChiLan1.0
ANK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11058,774,451 - 59,136,990 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1058,790,696 - 59,602,954 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01056,560,589 - 57,269,952 (-)NCBIMhudiblu_PPA_v0panPan3
ANK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1412,166,275 - 12,827,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl412,167,550 - 12,827,037 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha412,363,980 - 13,033,138 (-)NCBI
ROS_Cfam_1.0412,429,077 - 13,092,708 (-)NCBI
UMICH_Zoey_3.1412,405,705 - 12,731,679 (-)NCBI
UNSW_CanFamBas_1.0412,524,697 - 13,188,432 (-)NCBI
UU_Cfam_GSD_1.0412,836,070 - 13,499,460 (-)NCBI
Ank3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721368,578,618 - 68,890,049 (+)NCBI
SpeTri2.0NW_0049366142,664,594 - 2,976,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11463,416,154 - 63,809,220 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21468,392,391 - 68,782,101 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1970,549,665 - 71,253,928 (+)NCBI
ChlSab1.1 Ensembl970,893,260 - 71,254,245 (+)Ensembl
Vero_WHO_p1.0NW_02366604831,446,144 - 32,148,885 (+)NCBI
Ank3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247913,299,287 - 3,633,631 (+)NCBI

Position Markers
D20Got27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,662,965 - 18,663,165 (-)MAPPERmRatBN7.2
Rnor_6.02020,421,417 - 20,421,616NCBIRnor6.0
Rnor_5.02022,549,047 - 22,549,246UniSTSRnor5.0
RGSC_v3.42019,400,351 - 19,400,551RGDRGSC3.4
RGSC_v3.42019,400,352 - 19,400,551UniSTSRGSC3.4
RGSC_v3.12019,414,152 - 19,414,351RGD
Celera2020,048,472 - 20,048,671UniSTS
RH 3.4 Map20252.03UniSTS
RH 3.4 Map20252.03RGD
RH 2.0 Map20273.2RGD
Cytogenetic Map20p11UniSTS
RH118335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,930,339 - 18,930,517 (-)MAPPERmRatBN7.2
Rnor_6.02020,104,659 - 20,104,836NCBIRnor6.0
Rnor_5.02022,242,668 - 22,242,845UniSTSRnor5.0
RGSC_v3.42019,662,053 - 19,662,230UniSTSRGSC3.4
Celera2020,310,818 - 20,310,995UniSTS
Cytogenetic Map20p11UniSTS
RH138875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,798,619 - 18,798,774 (-)MAPPERmRatBN7.2
Rnor_6.02020,284,265 - 20,284,419NCBIRnor6.0
Rnor_5.02022,419,395 - 22,419,549UniSTSRnor5.0
RGSC_v3.42019,530,949 - 19,531,103UniSTSRGSC3.4
Celera2020,180,686 - 20,180,840UniSTS
Cytogenetic Map20p11UniSTS
AA892174  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,602,401 - 18,602,503 (-)MAPPERmRatBN7.2
Rnor_6.02020,480,906 - 20,481,007NCBIRnor6.0
Rnor_5.02022,610,217 - 22,610,318UniSTSRnor5.0
RGSC_v3.42019,328,305 - 19,328,406UniSTSRGSC3.4
Celera2019,988,928 - 19,989,029UniSTS
Cytogenetic Map20p11UniSTS
Ank3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,658,638 - 18,660,295 (-)MAPPERmRatBN7.2
Rnor_6.02020,424,290 - 20,425,946NCBIRnor6.0
Rnor_5.02022,551,832 - 22,553,488UniSTSRnor5.0
RGSC_v3.42019,394,897 - 19,396,553UniSTSRGSC3.4
Celera2020,044,137 - 20,045,793UniSTS
Cytogenetic Map20p11UniSTS
RH131586  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,711,957 - 18,712,352 (-)MAPPERmRatBN7.2
Rnor_6.02020,372,236 - 20,372,630NCBIRnor6.0
Rnor_5.02022,501,458 - 22,501,852UniSTSRnor5.0
RGSC_v3.42019,451,789 - 19,452,183UniSTSRGSC3.4
Celera2020,096,992 - 20,097,386UniSTS
Cytogenetic Map20p11UniSTS
RH132141  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,707,997 - 18,708,188 (-)MAPPERmRatBN7.2
Rnor_6.02020,376,401 - 20,376,591NCBIRnor6.0
Rnor_5.02022,505,623 - 22,505,813UniSTSRnor5.0
RGSC_v3.42019,447,827 - 19,448,017UniSTSRGSC3.4
Celera2020,093,032 - 20,093,222UniSTS
Cytogenetic Map20p11UniSTS
RH133987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,602,979 - 18,603,199 (-)MAPPERmRatBN7.2
Rnor_6.02020,480,210 - 20,480,429NCBIRnor6.0
Rnor_5.02022,609,521 - 22,609,740UniSTSRnor5.0
RGSC_v3.42019,328,883 - 19,329,102UniSTSRGSC3.4
Celera2019,989,506 - 19,989,725UniSTS
RH 3.4 Map20252.07UniSTS
Cytogenetic Map20p11UniSTS
BE103415  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,652,078 - 18,652,247 (-)MAPPERmRatBN7.2
Rnor_6.02020,432,336 - 20,432,504NCBIRnor6.0
Rnor_5.02022,559,878 - 22,560,046UniSTSRnor5.0
RGSC_v3.42019,378,239 - 19,378,407UniSTSRGSC3.4
Celera2020,037,591 - 20,037,759UniSTS
RH 3.4 Map20255.09UniSTS
Cytogenetic Map20p11UniSTS
BF405621  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,700,057 - 18,700,221 (-)MAPPERmRatBN7.2
Rnor_6.02020,384,371 - 20,384,534NCBIRnor6.0
Rnor_5.02022,513,315 - 22,513,478UniSTSRnor5.0
RGSC_v3.42019,439,104 - 19,439,267UniSTSRGSC3.4
Celera2020,085,394 - 20,085,557UniSTS
RH 3.4 Map20229.29UniSTS
Cytogenetic Map20p11UniSTS
BE116351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,639,632 - 18,639,782 (-)MAPPERmRatBN7.2
Rnor_6.02020,445,011 - 20,445,160NCBIRnor6.0
Rnor_5.02022,572,553 - 22,572,702UniSTSRnor5.0
RGSC_v3.42019,365,876 - 19,366,025UniSTSRGSC3.4
Celera2020,025,163 - 20,025,312UniSTS
RH 3.4 Map20252.46UniSTS
Cytogenetic Map20p11UniSTS
AU046827  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,837,350 - 18,837,504 (-)MAPPERmRatBN7.2
Rnor_6.02020,245,846 - 20,245,999NCBIRnor6.0
Rnor_5.02022,380,976 - 22,381,129UniSTSRnor5.0
RGSC_v3.42019,569,893 - 19,570,046UniSTSRGSC3.4
Celera2020,219,259 - 20,219,412UniSTS
Cytogenetic Map20p11UniSTS
RH138887  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22019,070,497 - 19,070,730 (-)MAPPERmRatBN7.2
Rnor_6.02019,964,277 - 19,964,509NCBIRnor6.0
Rnor_5.02022,102,711 - 22,102,943UniSTSRnor5.0
RGSC_v3.42019,812,691 - 19,812,923UniSTSRGSC3.4
Celera2020,448,434 - 20,448,666UniSTS
RH 3.4 Map20252.88UniSTS
Cytogenetic Map20p11UniSTS
RH69744  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02022,252,960 - 22,254,073NCBIRnor5.0
RGSC_v3.42019,650,825 - 19,651,937UniSTSRGSC3.4
Celera2020,299,590 - 20,300,702UniSTS
Cytogenetic Map20p11UniSTS
Ank3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22018,602,972 - 18,603,095 (-)MAPPERmRatBN7.2
Rnor_6.02020,480,314 - 20,480,436NCBIRnor6.0
Rnor_5.02022,609,625 - 22,609,747UniSTSRnor5.0
RGSC_v3.42019,328,876 - 19,328,998UniSTSRGSC3.4
Celera2019,989,499 - 19,989,621UniSTS
Cytogenetic Map20p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889870Pur30Proteinuria QTL 30190.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:175
Interacting mature miRNAs:197
Transcripts:ENSRNOT00000031134, ENSRNOT00000043215
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 34 2 2 2 8 10 74 35 30 11 8
Low 1 9 55 39 19 39 1 11
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF065149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF069525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF102552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ428573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ812025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000077620   ⟹   ENSRNOP00000071958
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,612,127 - 18,824,445 (-)Ensembl
Rnor_6.0 Ensembl2020,259,263 - 20,455,145 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079630   ⟹   ENSRNOP00000072180
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,602,786 - 19,086,300 (-)Ensembl
Rnor_6.0 Ensembl2020,236,151 - 20,479,685 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082181   ⟹   ENSRNOP00000071472
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,629,466 - 18,824,090 (-)Ensembl
Rnor_6.0 Ensembl2020,105,047 - 20,471,259 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085985   ⟹   ENSRNOP00000072993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,602,786 - 19,086,300 (-)Ensembl
Rnor_6.0 Ensembl2020,259,254 - 20,480,362 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090273   ⟹   ENSRNOP00000071942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,602,786 - 19,086,300 (-)Ensembl
Rnor_6.0 Ensembl2020,259,263 - 20,480,623 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091044   ⟹   ENSRNOP00000069120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,603,458 - 19,086,300 (-)Ensembl
Rnor_6.0 Ensembl2020,378,861 - 20,480,623 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100191   ⟹   ENSRNOP00000088491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,612,127 - 18,931,604 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111832   ⟹   ENSRNOP00000088269
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,603,458 - 19,086,300 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116271   ⟹   ENSRNOP00000095836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,603,458 - 19,086,300 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117152   ⟹   ENSRNOP00000082903
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2018,603,458 - 19,086,300 (-)Ensembl
RefSeq Acc Id: NM_001033984   ⟹   NP_001029156
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,612,127 - 18,930,129 (-)NCBI
Rnor_6.02020,105,047 - 20,471,282 (+)NCBI
Rnor_5.02022,087,201 - 22,609,939 (+)NCBI
RGSC_v3.42019,328,684 - 19,828,196 (-)RGD
Celera2019,998,653 - 20,310,607 (-)NCBI
Sequence:
RefSeq Acc Id: NM_031805   ⟹   NP_113993
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,781 - 19,086,004 (-)NCBI
Rnor_6.02019,948,767 - 20,480,628 (+)NCBI
Rnor_5.02022,087,201 - 22,609,939 (+)NCBI
RGSC_v3.42019,328,684 - 19,828,196 (-)RGD
Celera2019,989,307 - 20,463,938 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098834   ⟹   XP_038954762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,930,129 (-)NCBI
RefSeq Acc Id: XM_039098835   ⟹   XP_038954763
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,608,140 - 18,930,129 (-)NCBI
RefSeq Acc Id: XM_039098836   ⟹   XP_038954764
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,930,129 (-)NCBI
RefSeq Acc Id: XM_039098837   ⟹   XP_038954765
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 19,225,831 (-)NCBI
RefSeq Acc Id: XM_039098838   ⟹   XP_038954766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,930,129 (-)NCBI
RefSeq Acc Id: XM_039098839   ⟹   XP_038954767
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,930,129 (-)NCBI
RefSeq Acc Id: XM_039098840   ⟹   XP_038954768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,270 (-)NCBI
RefSeq Acc Id: XM_039098841   ⟹   XP_038954769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,269 (-)NCBI
RefSeq Acc Id: XM_039098842   ⟹   XP_038954770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,930,129 (-)NCBI
RefSeq Acc Id: XM_039098844   ⟹   XP_038954772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,268 (-)NCBI
RefSeq Acc Id: XM_039098845   ⟹   XP_038954773
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,266 (-)NCBI
RefSeq Acc Id: XM_039098846   ⟹   XP_038954774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,603,269 - 19,085,919 (-)NCBI
RefSeq Acc Id: XM_039098847   ⟹   XP_038954775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,266 (-)NCBI
RefSeq Acc Id: XM_039098848   ⟹   XP_038954776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,264 (-)NCBI
RefSeq Acc Id: XM_039098849   ⟹   XP_038954777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,263 (-)NCBI
RefSeq Acc Id: XM_039098850   ⟹   XP_038954778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,603,269 - 19,225,652 (-)NCBI
RefSeq Acc Id: XM_039098851   ⟹   XP_038954779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,931,261 (-)NCBI
RefSeq Acc Id: XM_039098852   ⟹   XP_038954780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,705,934 (-)NCBI
RefSeq Acc Id: XM_039098853   ⟹   XP_038954781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,705,934 (-)NCBI
RefSeq Acc Id: XM_039098855   ⟹   XP_038954783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,932,331 (-)NCBI
RefSeq Acc Id: XM_039098856   ⟹   XP_038954784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,932,331 (-)NCBI
RefSeq Acc Id: XM_039098857   ⟹   XP_038954785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22018,602,267 - 18,932,332 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001029156 (Get FASTA)   NCBI Sequence Viewer  
  NP_113993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954763 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954764 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954765 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954768 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954769 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954770 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954775 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954779 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954784 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954785 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC18852 (Get FASTA)   NCBI Sequence Viewer  
  AAC18853 (Get FASTA)   NCBI Sequence Viewer  
  AAC34809 (Get FASTA)   NCBI Sequence Viewer  
  AAC78143 (Get FASTA)   NCBI Sequence Viewer  
  AAI01886 (Get FASTA)   NCBI Sequence Viewer  
  CAD21705 (Get FASTA)   NCBI Sequence Viewer  
  CAH19219 (Get FASTA)   NCBI Sequence Viewer  
  CAH19220 (Get FASTA)   NCBI Sequence Viewer  
  CAH19221 (Get FASTA)   NCBI Sequence Viewer  
  CAH19222 (Get FASTA)   NCBI Sequence Viewer  
  CAH19223 (Get FASTA)   NCBI Sequence Viewer  
  CAH19224 (Get FASTA)   NCBI Sequence Viewer  
  CAH19225 (Get FASTA)   NCBI Sequence Viewer  
  EDL97280 (Get FASTA)   NCBI Sequence Viewer  
  EDL97281 (Get FASTA)   NCBI Sequence Viewer  
  EDL97282 (Get FASTA)   NCBI Sequence Viewer  
  EDL97283 (Get FASTA)   NCBI Sequence Viewer  
  EDL97284 (Get FASTA)   NCBI Sequence Viewer  
  EDL97285 (Get FASTA)   NCBI Sequence Viewer  
  EDL97286 (Get FASTA)   NCBI Sequence Viewer  
  EDL97287 (Get FASTA)   NCBI Sequence Viewer  
  EDL97288 (Get FASTA)   NCBI Sequence Viewer  
  EDL97289 (Get FASTA)   NCBI Sequence Viewer  
  EDL97290 (Get FASTA)   NCBI Sequence Viewer  
  EDL97291 (Get FASTA)   NCBI Sequence Viewer  
  EDL97292 (Get FASTA)   NCBI Sequence Viewer  
  EDL97293 (Get FASTA)   NCBI Sequence Viewer  
  EDL97294 (Get FASTA)   NCBI Sequence Viewer  
  O70511 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113993   ⟸   NM_031805
- Peptide Label: isoform 1
- UniProtKB: O70511 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001029156   ⟸   NM_001033984
- Peptide Label: isoform 2
- UniProtKB: O70511 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072180   ⟸   ENSRNOT00000079630
RefSeq Acc Id: ENSRNOP00000071472   ⟸   ENSRNOT00000082181
RefSeq Acc Id: ENSRNOP00000071958   ⟸   ENSRNOT00000077620
RefSeq Acc Id: ENSRNOP00000071942   ⟸   ENSRNOT00000090273
RefSeq Acc Id: ENSRNOP00000069120   ⟸   ENSRNOT00000091044
RefSeq Acc Id: ENSRNOP00000072993   ⟸   ENSRNOT00000085985
RefSeq Acc Id: XP_038954765   ⟸   XM_039098837
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954785   ⟸   XM_039098857
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038954784   ⟸   XM_039098856
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038954783   ⟸   XM_039098855
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038954768   ⟸   XM_039098840
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954769   ⟸   XM_039098841
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038954772   ⟸   XM_039098844
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038954773   ⟸   XM_039098845
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038954775   ⟸   XM_039098847
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038954776   ⟸   XM_039098848
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038954777   ⟸   XM_039098849
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038954779   ⟸   XM_039098851
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038954770   ⟸   XM_039098842
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954767   ⟸   XM_039098839
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954764   ⟸   XM_039098836
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954762   ⟸   XM_039098834
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954766   ⟸   XM_039098838
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038954781   ⟸   XM_039098853
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038954780   ⟸   XM_039098852
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038954778   ⟸   XM_039098850
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038954774   ⟸   XM_039098846
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038954763   ⟸   XM_039098835
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000088269   ⟸   ENSRNOT00000111832
RefSeq Acc Id: ENSRNOP00000095836   ⟸   ENSRNOT00000116271
RefSeq Acc Id: ENSRNOP00000088491   ⟸   ENSRNOT00000100191
RefSeq Acc Id: ENSRNOP00000082903   ⟸   ENSRNOT00000117152
Protein Domains
ANK_REP_REGION   Death   ZU5

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620157 AgrOrtholog
Ensembl Genes ENSRNOG00000053288 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000069120 UniProtKB/TrEMBL
  ENSRNOP00000071472 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000071942 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000071958 UniProtKB/TrEMBL
  ENSRNOP00000072180 UniProtKB/TrEMBL
  ENSRNOP00000072993 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077620 UniProtKB/TrEMBL
  ENSRNOT00000079630 UniProtKB/TrEMBL
  ENSRNOT00000082181 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085985 UniProtKB/TrEMBL
  ENSRNOT00000090273 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000091044 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ank3_Death UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_UPA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Death_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361833 UniProtKB/Swiss-Prot
NCBI Gene 361833 ENTREZGENE
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Death UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ank3 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEATH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEATH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JUJ5_RAT UniProtKB/TrEMBL
  A0A0G2K0J3_RAT UniProtKB/TrEMBL
  A0A0G2K1Q7_RAT UniProtKB/TrEMBL
  A0A0G2K1R9_RAT UniProtKB/TrEMBL
  A0A0G2K2B9_RAT UniProtKB/TrEMBL
  A0A0G2K4D0_RAT UniProtKB/TrEMBL
  ANK3_RAT UniProtKB/Swiss-Prot
  O70510_RAT UniProtKB/TrEMBL
  O70511 ENTREZGENE
  Q3T1J5_RAT UniProtKB/TrEMBL
  Q574E1_RAT UniProtKB/TrEMBL
  Q792M9_RAT UniProtKB/TrEMBL
UniProt Secondary Q574D7 UniProtKB/Swiss-Prot
  Q574D8 UniProtKB/Swiss-Prot
  Q574D9 UniProtKB/Swiss-Prot
  Q574E0 UniProtKB/Swiss-Prot
  Q574E2 UniProtKB/Swiss-Prot
  Q8VDA0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Ank3  ankyrin 3  Ank3  ankyrin 3, node of Ranvier (ankyrin G)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-29 Ank3  ankyrin 3, node of Ranvier (ankyrin G)  Ank3  ankyrin 3, node of Ranvier  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-10-12 Ank3        Symbol and Name status set to provisional 70820 PROVISIONAL
2005-10-05   ankyrin 3, epithelial  Ank3  ankyrin 3, epithelial isoform g  Name updated to reflect Mouse nomenclature 1299863 APPROVED
2005-01-20 Ank3  ankyrin 3, epithelial isoform g    ankyrin 3 (G)  Name updated 1299863 APPROVED
2002-08-07 Ank3  ankyrin 3 (G)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localize to the postsynaptic folds and to the sarcoplasmic reticulum 619703
gene_cellular_localization localize to the postsynaptic folds and to the sarcoplasmic reticulum 631996
gene_domains contains a spectrin-binding domain 631996
gene_transcript transcripts of 8.0 kb and 5.6 kb are detected 631996