Mbp (myelin basic protein) - Rat Genome Database

Name: Mbp
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Mbp (myelin basic protein) Rattus norvegicus

Analyze

Symbol:

Mbp

Name:

myelin basic protein

RGD ID:

3054

Description:

A structural constituent of myelin sheath. Involved in several processes, including nervous system development; response to progesterone; and response to tumor necrosis factor. Localizes to cell surface and compact myelin. Used to study demyelinating disease. Biomarker of Huntington's disease; brain disease (multiple); diabetic neuropathy; hypothyroidism; and schizophrenia. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human MBP (myelin basic protein); INTERACTS WITH (20S)-20-hydroxypregn-4-en-3-one; (S)-nicotine; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine.

Type:

protein-coding

RefSeq Status:

REVIEWED

Also known as:

Golli-Mbp; MBP S; Mbps; myelin basic protein Golli-mbp; myelin basic protein S

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MBP (myelin basic protein)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Mbp (myelin basic protein)	HGNC	EggNOG, OrthoMCL, NCBI, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mbp (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MBP (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MBP (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101958597 (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MBP (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LOC103244050 (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mbp (myelin basic protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Mbp (myelin basic protein)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	MBP (myelin basic protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	mbpa (myelin basic protein a)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)

Allele / Splice:

Mbp^md

Genetic Models:

LE-Mbp^md

Is Marker For:

Strains: LE-Mbp^md

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	75,855,878 - 75,966,404 (+)	NCBI
Rnor_6.0 Ensembl	18	79,326,738 - 79,437,310 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	18	79,326,738 - 79,437,310 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	18	79,098,861 - 79,130,602 (+)	NCBI
Celera	18	74,493,165 - 74,602,969 (+)	NCBI		Celera
Cytogenetic Map	18	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

angiostrongyliasis (ISO)

Brain Injuries (IDA)

Burn-McKeown syndrome (ISO)

Carbon Monoxide Poisoning (IEP)

cerebrovascular disease (ISO)

chromosome 18q deletion syndrome (ISO)

demyelinating disease (IAGP,ISO)

diabetic neuropathy (IEP)

encephalitis (IEP)

Experimental Autoimmune Encephalomyelitis (ISO)

Experimental Diabetes Mellitus (IDA)

Huntington's disease (IEP)

hypothyroidism (IEP)

Hypoxia-Ischemia, Brain (IEP)

Inflammation (ISO)

intestinal volvulus (ISO)

multiple sclerosis (ISO)

Neurodevelopmental Disorders (ISO)

neuromyelitis optica (ISO)

periventricular leukomalacia (IEP)

schizophrenia (IEP)

temporal lobe epilepsy (IEP)

transient cerebral ischemia (IEP)

Urinary Retention (ISO)

Volvulus Of Midgut (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-alpha-tocopherol (ISO)

(20S)-20-hydroxypregn-4-en-3-one (EXP)

(S)-nicotine (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine (EXP)

1-octadec-9-enoylglycero-3-phosphate (EXP)

17beta-estradiol (ISO)

2,2',3,3',6,6'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-D (EXP)

2,5-hexanedione (EXP)

2,6-di-tert-butyl-4-methylphenol (ISO)

2-trans,6-trans,10-trans-geranylgeranyl diphosphate (EXP)

3,3',5-triiodo-L-thyronine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

6alpha-methylprednisolone (ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

agmatine (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

brucine (EXP)

butanal (ISO)

butyric acid (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

carbofuran (EXP)

casticin (ISO)

chloroacetic acid (EXP)

choline (ISO)

clozapine (ISO)

cocaine (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cycloheximide (EXP)

dexamethasone (ISO)

diarsenic trioxide (EXP)

diethyldithiocarbamic acid (EXP)

diiodine (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethanol (EXP,ISO)

ethylenediaminetetraacetic acid (EXP)

etoposide (ISO)

folic acid (ISO)

fonofos (ISO)

formaldehyde (ISO)

fulvestrant (EXP)

gamma-hexachlorocyclohexane (EXP)

genistein (EXP,ISO)

gentamycin (EXP)

glyburide (EXP)

glycerol (EXP)

haloperidol (ISO)

indometacin (EXP,ISO)

irinotecan (ISO)

ketamine (EXP)

L-methionine (ISO)

lead diacetate (EXP,ISO)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

linagliptin (ISO)

lovastatin (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

melatonin (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (EXP)

mitomycin C (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-N-nitrosourea (EXP)

N-nitrosodiethylamine (EXP)

neocuproine (EXP)

nickel atom (ISO)

nicotine (EXP)

nitric oxide (EXP)

ochratoxin A (EXP,ISO)

ozone (ISO)

parathion (ISO)

PCB138 (EXP)

pentanal (ISO)

permethrin (EXP)

phencyclidine (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

poly(I:C) (EXP)

procymidone (EXP)

progesterone (EXP,ISO)

quetiapine fumarate (ISO)

rifampicin (EXP)

rotenone (EXP)

SB 431542 (ISO)

scopolamine (ISO)

selenic acid (EXP)

selenium atom (ISO)

silicon dioxide (ISO)

sirolimus (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP)

sodium dichromate (ISO)

sodium fluoride (EXP)

streptozocin (EXP)

tamibarotene (EXP)

tamoxifen (ISO)

terbufos (ISO)

testosterone (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (ISO)

trichostatin A (ISO)

trimethylamine N-oxide (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

ursodeoxycholic acid (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

Y-27632 (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aging (IEP)

maintenance of blood-brain barrier (IEA,ISO)

MAPK cascade (IEA,ISO)

membrane organization (ISO)

myelination (IBA,IMP,ISO)

negative regulation of axonogenesis (IMP)

negative regulation of heterotypic cell-cell adhesion (IEA,ISO)

positive regulation of chemokine (C-X-C motif) ligand 2 production (IEA,ISO)

positive regulation of interleukin-6 production (IEA,ISO)

positive regulation of metalloendopeptidase activity (IEA,ISO)

response to fatty acid (IEP)

response to mercury ion (IEP)

response to progesterone (IDA)

response to toxic substance (ISO)

response to tumor necrosis factor (IEP)

sensory perception of sound (ISO)

substantia nigra development (ISO)

Cellular Component

cell periphery (IBA,ISO)

cell projection (ISO)

cell surface (IDA)

compact myelin (IBA,IDA,ISO)

internode region of axon (IBA,ISO)

myelin sheath (IDA,IEA,ISO,TAS)

neuronal cell body (IBA,ISO)

plasma membrane (IEA)

protein-containing complex (IEA,ISO)

Molecular Function

calmodulin binding (IEA,ISO)

protease binding (ISO)

protein binding (IPI,ISO)

structural constituent of myelin sheath (IBA,IEA,IMP,TAS)

References

References - curated


1.	Bain JL, etal., Arch Oral Biol. 2013 Mar;58(3):266-71. doi: 10.1016/j.archoralbio.2012.11.007. Epub 2012 Dec 12.
2.	Barradas PC, etal., J Neurosci Res. 2001 Oct 15;66(2):254-61. doi: 10.1002/jnr.1218.
3.	Blockx I, etal., Neuroimage. 2012 Jan 16;59(2):957-67. doi: 10.1016/j.neuroimage.2011.08.062. Epub 2011 Aug 30.
4.	Boylan KB, etal., Ann Neurol 1990 Mar;27(3):291-7.
5.	Brunner C, etal., J Neurochem 1989 Jan;52(1):296-304.
6.	Clark RE Jr, etal., J Neurochem 2002 Nov;83(3):565-73.
7.	Delaney KH, etal., Lab Anim Sci 1995 Oct;45(5):547-53.
8.	Dilek M, etal., J Matern Fetal Neonatal Med. 2013 Jul 23.
9.	Eftekharpour E, etal., Exp Neurol 2005 Jun;193(2):334-49.
10.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
11.	Ghoumari AM, etal., J Neurochem. 2003 Aug;86(4):848-59.
12.	Gitik M, etal., J Neuroinflammation. 2011 Mar 15;8:24. doi: 10.1186/1742-2094-8-24.
13.	GOA data from the GO Consortium
14.	Gould RM, etal., J Neurochem 1999 Nov;73(5):1913-24.
15.	Gregersen R, etal., Exp Brain Res. 2001 Jun;138(3):384-92.
16.	Guo L, etal., Cell Mol Immunol. 2004 Oct;1(5):387-91.
17.	Hung PL, etal., Stroke. 2013 Aug;44(8):2275-83. doi: 10.1161/STROKEAHA.113.001552. Epub 2013 May 28.
18.	Kim H, etal., Proteomics. 2007 Aug;7(15):2591-602.
19.	Li W, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2008 Jun;28(6):1028-30.
20.	Lin KY, etal., Vet Parasitol. 2010 Jul 15;171(1-2):74-80. doi: 10.1016/j.vetpar.2010.03.019. Epub 2010 Mar 30.
21.	Lotosh NG, etal., Bull Exp Biol Med. 2013 May;155(1):48-51.
22.	Majava V, etal., Amino Acids. 2010 Jun;39(1):59-71. doi: 10.1007/s00726-009-0364-2. Epub 2009 Oct 24.
23.	Matheus L and Blair GE, Biochim Biophys Acta 2003 Oct 20;1630(1):47-53.
24.	MGD data from the GO Consortium
25.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
26.	O'Connor LT, etal., J Neurosci 1999 May 1;19(9):3404-13.
27.	Padhi BK and Pelletier G, Toxicol Lett. 2012 Sep 18;213(3):374-80. doi: 10.1016/j.toxlet.2012.07.011. Epub 2012 Jul 24.
28.	Peacock JW, etal., Eur J Immunol. 2003 Jul;33(7):1849-58. doi: 10.1002/eji.200323148.
29.	Phokeo V, etal., J Comp Neurol 2002 Sep 23;451(3):213-24.
30.	RGD automated data pipeline
31.	RGD automated import pipeline for gene-chemical interactions
32.	Roach A, etal., Cell 1983 Oct;34(3):799-806.
33.	Sakakibara R, etal., J Neurol. 2006 Aug;253(8):1103-10. Epub 2006 May 6.
34.	Schaich M, etal., Biol Chem Hoppe Seyler 1986 Aug;367(8):825-34.
35.	Shi X, etal., J Neuroinflammation. 2013 Jun 4;10:69. doi: 10.1186/1742-2094-10-69.
36.	Swanborg RH Clin Immunol Immunopathol 1995 Oct;77(1):4-13.
37.	Tuzun F, etal., J Matern Fetal Neonatal Med. 2012 Jun;25(6):849-54. doi: 10.3109/14767058.2011.587917. Epub 2011 Sep 6.
38.	Wang W, etal., Neurol Res. 2012 Dec;34(10):1007-15. doi: 10.1179/1743132812Y.0000000106.
39.	Xie F, etal., Int J Mol Med. 2013 Sep 11. doi: 10.3892/ijmm.2013.1486.
40.	Yamaguchi Y, etal., J Neurosci Res. 2008 Mar;86(4):766-75.
41.	Ye Y, etal., Brain Res. 2013 Jul 19;1522:76-87. doi: 10.1016/j.brainres.2013.05.026. Epub 2013 May 28.
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Additional References at PubMed

PMID:1694232	PMID:4122324	PMID:4141893	PMID:7578863	PMID:7592896	PMID:8889548	PMID:8947489	PMID:9722539	PMID:11500922	PMID:12372841	PMID:12477932	PMID:12718855
PMID:14614079	PMID:15695521	PMID:16405874	PMID:16421295	PMID:16723544	PMID:16773652	PMID:17329413	PMID:17634366	PMID:18821983	PMID:19026719	PMID:19178193	PMID:19211156
PMID:19292454	PMID:20334434	PMID:20578039	PMID:20637745	PMID:20882567	PMID:21357748	PMID:21479584	PMID:21996274	PMID:22524708	PMID:22676642	PMID:22871113	PMID:22926577
PMID:24101522	PMID:24321769	PMID:24524292	PMID:25003183	PMID:25282817	PMID:25512606	PMID:25847153	PMID:25931508	PMID:26002313	PMID:26670084	PMID:27230884	PMID:27346352
PMID:29034508	PMID:29073112	PMID:29476059	PMID:29742816	PMID:30926549	PMID:31885393

Genomics

Comparative Map Data

Mbp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	75,855,878 - 75,966,404 (+)	NCBI
Rnor_6.0 Ensembl	18	79,326,738 - 79,437,310 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	18	79,326,738 - 79,437,310 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	18	79,098,861 - 79,130,602 (+)	NCBI
Celera	18	74,493,165 - 74,602,969 (+)	NCBI		Celera
Cytogenetic Map	18	q12.3	NCBI

MBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	18	76,978,827 - 77,133,683 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	18	76,978,833 - 77,133,708 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	18	74,690,789 - 74,844,739 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	72,819,777 - 72,973,762 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	18	72,820,710 - 72,857,962	NCBI
Celera	18	71,507,828 - 71,661,692 (-)	NCBI
Cytogenetic Map	18	q23	NCBI
HuRef	18	71,371,431 - 71,525,606 (-)	NCBI		HuRef
CHM1_1	18	74,686,498 - 74,841,139 (-)	NCBI		CHM1_1

Mbp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	82,492,883 - 82,603,762 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	18	82,493,271 - 82,603,762 (+)	Ensembl
GRCm38	18	82,475,091 - 82,585,637 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	82,475,146 - 82,585,637 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	82,644,515 - 82,755,029 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	18	82,609,551 - 82,720,065 (+)	NCBI			mm8
Celera	18	83,548,320 - 83,655,575 (+)	NCBI		Celera
Cytogenetic Map	18	E3	NCBI
cM Map	18	55.84	NCBI

Mbp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	60,323,950 - 60,441,406 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	60,324,060 - 60,448,926 (-)	NCBI	ChiLan1.0	ChiLan1.0

MBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	18	73,628,537 - 73,781,956 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	73,629,522 - 73,755,351 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	18	70,369,882 - 70,526,693 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	2,841,801 - 2,952,553 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	2,846,589 - 2,951,860 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	3,844,963 - 3,959,816 (+)	NCBI
ROS_Cfam_1.0	1	2,644,339 - 2,759,352 (+)	NCBI
UMICH_Zoey_3.1	1	2,689,655 - 2,804,648 (+)	NCBI
UNSW_CanFamBas_1.0	1	2,640,084 - 2,755,067 (+)	NCBI
UU_Cfam_GSD_1.0	1	2,810,294 - 2,925,302 (+)	NCBI

LOC101958597
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	16,761,025 - 16,837,898 (+)	NCBI
SpeTri2.0	NW_004936616	2,082,154 - 2,159,028 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	147,568,673 - 147,685,288 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	147,649,516 - 147,685,289 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103244050
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	2,844,154 - 2,996,640 (+)	NCBI
ChlSab1.1 Ensembl	18	2,868,795 - 2,997,046 (+)	Ensembl

Mbp
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624806	3,465,881 - 3,587,428 (+)	NCBI

Position Markers

D18Chm78

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,340,199 - 79,340,404	NCBI	Rnor6.0
Rnor_5.0	18	78,398,856 - 78,399,061	UniSTS	Rnor5.0
RGSC_v3.4	18	78,957,101 - 78,957,306	UniSTS	RGSC3.4
Celera	18	74,506,599 - 74,506,804	UniSTS
Cytogenetic Map	18	q	UniSTS

D18Chm77

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,337,649 - 79,337,851	NCBI	Rnor6.0
Rnor_5.0	18	78,396,306 - 78,396,508	UniSTS	Rnor5.0
RGSC_v3.4	18	78,954,551 - 78,954,753	UniSTS	RGSC3.4
Celera	18	74,504,049 - 74,504,251	UniSTS
Cytogenetic Map	18	q	UniSTS

D18Chm80

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,398,211 - 79,398,394	NCBI	Rnor6.0
Rnor_5.0	18	78,465,124 - 78,465,309	UniSTS	Rnor5.0
RGSC_v3.4	18	79,017,417 - 79,017,602	UniSTS	RGSC3.4
Celera	18	74,564,227 - 74,564,410	UniSTS
Cytogenetic Map	18	q	UniSTS

D18Chm79

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,393,478 - 79,393,688	NCBI	Rnor6.0
Rnor_5.0	18	78,459,938 - 78,460,148	UniSTS	Rnor5.0
RGSC_v3.4	18	79,012,683 - 79,012,893	UniSTS	RGSC3.4
Celera	18	74,559,493 - 74,559,704	UniSTS
Cytogenetic Map	18	q	UniSTS

RH128788

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,437,050 - 79,437,263	NCBI	Rnor6.0
Rnor_5.0	18	78,503,966 - 78,504,179	UniSTS	Rnor5.0
RGSC_v3.4	18	79,057,069 - 79,057,282	UniSTS	RGSC3.4
Celera	18	74,602,709 - 74,602,922	UniSTS
RH 3.4 Map	18	809.2	UniSTS
Cytogenetic Map	18	q	UniSTS

RH130523

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,410,169 - 79,410,377	NCBI	Rnor6.0
Rnor_5.0	18	78,477,084 - 78,477,292	UniSTS	Rnor5.0
RGSC_v3.4	18	79,029,377 - 79,029,585	UniSTS	RGSC3.4
Celera	18	74,576,185 - 74,576,393	UniSTS
RH 3.4 Map	18	809.2	UniSTS
Cytogenetic Map	18	q	UniSTS

BE102437

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,410,630 - 79,410,783	NCBI	Rnor6.0
Rnor_5.0	18	78,477,545 - 78,477,698	UniSTS	Rnor5.0
RGSC_v3.4	18	79,029,838 - 79,029,991	UniSTS	RGSC3.4
Celera	18	74,576,646 - 74,576,799	UniSTS
RH 3.4 Map	18	808.8	UniSTS
Cytogenetic Map	18	q	UniSTS

BF402482

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,422,854 - 79,423,010	NCBI	Rnor6.0
Rnor_5.0	18	78,489,770 - 78,489,926	UniSTS	Rnor5.0
RGSC_v3.4	18	79,042,228 - 79,042,384	UniSTS	RGSC3.4
Celera	18	74,588,651 - 74,588,807	UniSTS
RH 3.4 Map	18	809.2	UniSTS
Cytogenetic Map	18	q	UniSTS

BF405689

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,433,947 - 79,434,087	NCBI	Rnor6.0
Rnor_5.0	18	78,500,863 - 78,501,003	UniSTS	Rnor5.0
RGSC_v3.4	18	79,053,966 - 79,054,106	UniSTS	RGSC3.4
Celera	18	74,599,606 - 74,599,746	UniSTS
RH 3.4 Map	18	809.2	UniSTS
Cytogenetic Map	18	q	UniSTS

RH141640

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,408,083 - 79,408,237	NCBI	Rnor6.0
Rnor_5.0	18	78,474,998 - 78,475,152	UniSTS	Rnor5.0
RGSC_v3.4	18	79,027,291 - 79,027,445	UniSTS	RGSC3.4
Celera	18	74,574,099 - 74,574,253	UniSTS
RH 3.4 Map	18	798.0	UniSTS
Cytogenetic Map	18	q	UniSTS

BE106956

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	79,415,410 - 79,415,568	NCBI	Rnor6.0
Rnor_5.0	18	78,482,325 - 78,482,483	UniSTS	Rnor5.0
RGSC_v3.4	18	79,034,618 - 79,034,776	UniSTS	RGSC3.4
Celera	18	74,581,426 - 74,581,584	UniSTS
RH 3.4 Map	18	809.6	UniSTS
Cytogenetic Map	18	q	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	15695872	87080053	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	15695872	87080053	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	20285758	87080053	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	22603736	87074531	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25961026	81761656	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	32670352	87080053	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	32704022	80696226	Rat
631518	Bw11	Body weight QTL 11	2.8		body mass (VT:0001259)	body weight (CMO:0000012)	18	38221919	83221919	Rat
61367	Iddm4	Insulin dependent diabetes mellitus QTL 4	2.33	0.0074	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	40375769	85375769	Rat
6893683	Bw110	Body weight QTL 110	2.7	0.002	body mass (VT:0001259)	body weight (CMO:0000012)	18	45002194	88201929	Rat
1598826	Anxrr20	Anxiety related response QTL 20	3.04		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	18	46319476	88201929	Rat
9589041	Epfw12	Epididymal fat weight QTL 12	17.08	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	18	49130920	88201929	Rat
8694432	Bw165	Body weight QTL 165	3.81	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	49130920	88201929	Rat
8694366	Abfw8	Abdominal fat weight QTL 8	6.38	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	18	49130920	88201929	Rat
2303571	Bw92	Body weight QTL 92	3		body mass (VT:0001259)	body weight (CMO:0000012)	18	51375816	88201929	Rat
2303584	Gluco55	Glucose level QTL 55	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	18	51375816	88201929	Rat
738008	Hcar14	Hepatocarcinoma resistance QTL 14	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion number (CMO:0001462)	18	53033494	87080053	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	54108375	79575348	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	54108375	79575348	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	54108375	79575348	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	54108375	79575348	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	54108375	79575348	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	54108375	79575348	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	54108375	79575348	Rat
1558649	Bw58	Body weight QTL 58	3.4	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	18	57448678	88201929	Rat
6893359	Bw103	Body weight QTL 103	1.2	0.12	body mass (VT:0001259)	body weight (CMO:0000012)	18	57448678	88201929	Rat
6893368	Bw107	Body weight QTL 107	0.3	0.5	body mass (VT:0001259)	body weight (CMO:0000012)	18	57448678	88201929	Rat
1298072	Cia26	Collagen induced arthritis QTL 26	3.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	58196300	88201929	Rat
70185	BpQTLcluster15	Blood pressure QTL cluster 15	4.61		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	61901354	79948616	Rat
70185	BpQTLcluster15	Blood pressure QTL cluster 15	4.61		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	61901354	79948616	Rat
70185	BpQTLcluster15	Blood pressure QTL cluster 15	4.61		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	18	61901354	79948616	Rat
70185	BpQTLcluster15	Blood pressure QTL cluster 15	4.61		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	18	61901354	79948616	Rat
2301969	Bp324	Blood pressure QTL 324	4.05		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	61901354	79948616	Rat
6903356	Bp354	Blood pressure QTL 354	4.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	61985648	88201929	Rat
631675	Iddm15	Insulin dependent diabetes mellitus QTL 15			urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	18	62805406	80696375	Rat
61384	Bp48	Blood pressure QTL 48	19.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	62805406	80696375	Rat
724542	Kidm2	Kidney mass QTL 2	2.6		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	18	63009812	88201929	Rat
634333	Pia19	Pristane induced arthritis QTL 19	3.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	77151301	83366399	Rat

Related Rat Strains

The following Strains have been annotated to Mbp

LE-Mbp^md

Genetic Models

This gene Mbp is modified in the following models/strains

LE-Mbp^md

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1452
Count of miRNA genes:	250
Interacting mature miRNAs:	309
Transcripts:	ENSRNOT00000022280, ENSRNOT00000022303, ENSRNOT00000058295, ENSRNOT00000058296
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High									25
Medium	1		19	10	17	10	6	6	25		4	9	6
Low	2	42	38	31	2	31	2	5	24	35	37	2	2
Below cutoff		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001025291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001025292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001025293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001025294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_017026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC132699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF439750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI145512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ132895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ132896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ132897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ132898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY208921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC084713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB586909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JX131663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JX131664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	K00512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M25889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X72392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000022280 ⟹ ENSRNOP00000022280

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	79,406,381 - 79,437,310 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000022303 ⟹ ENSRNOP00000022303

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	79,406,381 - 79,437,310 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000058295 ⟹ ENSRNOP00000055097

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	79,406,381 - 79,437,310 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000058296 ⟹ ENSRNOP00000055098

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	79,406,381 - 79,437,310 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089879 ⟹ ENSRNOP00000070157

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	79,326,738 - 79,407,285 (+)	Ensembl

RefSeq Acc Id:

NM_001025289 ⟹ NP_001020460

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,855,878 - 75,936,388 (+)	NCBI
Rnor_6.0	18	79,326,738 - 79,407,294 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	RGD
Celera	18	74,493,165 - 74,573,310 (+)	NCBI

Sequence:

show sequence

CGGGGCGGGAGCGGGGTGCTCGCCCGTCCCCCGAGCAGCCGCTGTCAGTCAGCGCCGCTGCGCG
CCAGCGAGGACGAGCCTCTGGCTCAGGCCGCCAGAGTCTCGCGACCCCGGAACGCAGTACTCGT
GCCCCAGCGACCCCGAGCCCAGCGTTGGGTTCCTTCTGCTGGGCTCCCGGGCCCCACTTGGCGT
CCGATCCGCAGGCAGCACCGCTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGA
AAGCGAGAATTAGCATCTGAGAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAA
AAAAGAGAAGCGTTGGCAAGCTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGC
AGATGCGATCCAGAACAATGGGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACA
GCAGACCCAAAGAATAACTGGCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGA
TCCGCCTCTTTTCCCGAGATGCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGA
GTCCGACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATG
GCATCACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGG
ACCATGCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCG
CTTCTTTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGTGAGCTCCGAGGCGTAG
AGGAACTATGGGTTTAACTGGCAGAAAGGAAGGAGAGGTGGGCAGGTGAACTGGGCCAGTCACC
ATGGCTGGCATGTCCCTGTGTCTGAGATACTGGCCCTGATTGGACAGTGGTGATGGCCTGGGGG
AGTGGGCGAGGAGTGGGCGTGGTCGCCACTTAGCCTATGTCAACCCGTATTGCTACCTTTGTCC
TTCTCACAAGGGACTGCGATTGGGTGTCACTCTGAAATGCAAGGGCCTTCTGCATCCTAAATTT
TGAGGCTCCCTGGATGAGTCATTGAGACTACTGGTTCTTAAGTGTATATGCCCTATGCCTGGGG
CTTCAGCCTATTCCGCCTCTGCACAGTGCTTCCCGTTTCGATCCTGATTTGTGTTCATTCTCTG
CTGGGTTCAGGCTGCTAATTTCTTGCCGCTGTGAAACAATGGTCCGGTTGAGGCAAGGAGGTCT
GCCGAGCAAACCCCTGCACCTCCAACAAACTTTCCCCTTTGTCTTAAGTCGTTTGGTTGGGGGG
CGGGGGGGTGTTTGAATGTATGTTCAAGACAATTTGTTTGTGTGTGATTCCATTAATTTAAATA
TAACTTGGGTTTCATGATGTTTCGAAAGCAAATATCCTGTGAATTAAAATGTATCAGAAGATAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001025291 ⟹ NP_001020462

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,935,475 - 75,966,404 (+)	NCBI
Rnor_6.0	18	79,406,381 - 79,437,310 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	RGD
Celera	18	74,572,397 - 74,602,969 (+)	NCBI

Sequence:

show sequence

AAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGA
AGGCCTGGATGTGATGGCATCACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCC
ACAGCAAGTACCATGGACCATGCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCC
TTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGT
ACCCTGGCTAAAGCAGAGCCGGAGCCCTCTGCCTTCTCATGCCCGCAGCCGTCCCGGGCTGTGC
CACATGTACAAGGACTCACACACAAGAACTACCCACTACGGCTCCCTGCCCCAGAAGTCGCAGA
GGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCAAGAACATTGTGACACCTCGTACACCCCC
TCCATCCCAAGGAAAGGGGAGAGGCCTGTCCCTCAGCAGATTTAGCTGGGGGGCCGAGGGGCAG
AAGCCAGGATTTGGCTACGGAGGCAGAGCTTCCGACTATAAATCGGCTCACAAGGGATTCAAGG
GGGCCTACGACGCCCAGGGCACGCTTTCCAAAATCTTTAAGCTGGGAGGAAGAGACAGCCGCTC
TGGATCTCCCATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGC
TTCTTAATATAACTGCCTTAAACGTTTAATTCTACTTGCACCAAATAGCTAGTTAGAGCAGACC
CTCTCTTAATCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCACGGCACCCTGACTGGCTAA
AACTGTTTGTCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTCTTCTCTGCCCCGACTTGCT
CCCCGTGTACCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACACCCTTTCAAGTTCACCCCTA
CTCCATCCTCAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAGCTTCCGTGGGCACTGCGGA
TAGACAGGCACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGACTGTGTGGTCCAGGCTTCC
TTTGTTTTCTTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATCAGACAGTCTTGGAGTGGCT
TACACAACGGGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGT
GGCCCTGGGGACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCAGCTGATTTCGAGCGTGGCA
GAGGGAAGGAAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGGAAACGGGGACTTAGGGGAA
CACGCTGGAGATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTCCTCAGTGGCTCCCCAGAGC
AGGTGCTTTTAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCCAAGGACATGGCGCATCA
GGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCACTTTA
GGGTGGTCAGCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACACTAACCTCAGTGGAAAAGT
AACCATTCCCTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGAGGGTTCCTGTCGCTGAATC
AAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGGGATGAGGAGCTCAGAATTC
CAGTCTTCTAATGTCCACGGACACCTCCCCATCCCTCTAACGTACTGACTATGTCTTTTGATTT
AGCATGTCTTCTATAGACCTTCCAAAGAGACCCACACTGGCACTGTCACCCCCTAGGAGGGAAG
GTGATGGTTGATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTAATTCCGAGGAGAGTGTGGG
TTTAAGATAACACCTATTAATGCATTGCCACAATAATGTGGGGGTAAGAGAAACGCAGGGACGA
AACTTCCAGAAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCGCCCTCCGGTGTGACTGAAC
GACCGACCTTGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTATGGCTGGACAGAAGCACCT
ACTGTTCTTGGATATTGAAATAAAATAATAAACTTGCAATGATCTTTGAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

NM_001025292 ⟹ NP_001020463

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,935,475 - 75,966,404 (+)	NCBI
Rnor_6.0	18	79,406,381 - 79,437,310 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	RGD
Celera	18	74,572,397 - 74,602,969 (+)	NCBI

Sequence:

show sequence

AAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGA
AGGCCTGGATGTGATGGCATCACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCC
ACAGCAAGTACCATGGACCATGCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCC
TTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGA
CTCACACACAAGAACTACCCACTACGGCTCCCTGCCCCAGAAGTCGCAGAGGACCCAAGATGAA
AACCCAGTAGTCCACTTCTTCAAGAACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAA
AGGGGAGAGGCCTGTCCCTCAGCAGATTTAGCTGGGGGGCCGAGGGGCAGAAGCCAGGATTTGG
CTACGGAGGCAGAGCTTCCGACTATAAATCGGCTCACAAGGGATTCAAGGGGGCCTACGACGCC
CAGGGCACGCTTTCCAAAATCTTTAAGCTGGGAGGAAGAGACAGCCGCTCTGGATCTCCCATGG
CAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGCTTCTTAATATAACT
GCCTTAAACGTTTAATTCTACTTGCACCAAATAGCTAGTTAGAGCAGACCCTCTCTTAATCCCG
TGGGGCTGTGAACGCGGCGGGGCCAGGCCCACGGCACCCTGACTGGCTAAAACTGTTTGTCCCT
TTTTATTTGAAGATTGAGTTTCCTCGGGGTCTTCTCTGCCCCGACTTGCTCCCCGTGTACCTTG
GTCGACTCCGGAGGTTCAGGTGCACGGACACCCTTTCAAGTTCACCCCTACTCCATCCTCAGAC
TTTCTTTTCACGGCGAGGCGCACCCCTCCAGCTTCCGTGGGCACTGCGGATAGACAGGCACACC
GCCAAGGAGCCAGAGAGCATGGCGCAGGGGACTGTGTGGTCCAGGCTTCCTTTGTTTTCTTTCC
CCTAAAGAGCTTTGTTTTTCCTAACAGGATCAGACAGTCTTGGAGTGGCTTACACAACGGGGGC
TTGTGGTATGTGAGCACAGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGTGGCCCTGGGGACGC
TTCCAGGCCAGCGGTTCCCTGCACCCCACCAGCTGATTTCGAGCGTGGCAGAGGGAAGGAAAGG
GGCGAGCGGGCTGGGCAATGGACCCGACAGGAAACGGGGACTTAGGGGAACACGCTGGAGATGC
CATGTGTGGCTGCCGAAGGTCACCATCTCTCCTCAGTGGCTCCCCAGAGCAGGTGCTTTTAAGA
ACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCCAAGGACATGGCGCATCAGGAAGTGGGACTGC
AGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCACTTTAGGGTGGTCAGCGGC
AGCTCGCCATGGCAGTGCCCATTGGTGCACACTAACCTCAGTGGAAAAGTAACCATTCCCTGCC
TCTTAGAAAGAACTCATTCTTAGTTTTAGGAGGGTTCCTGTCGCTGAATCAAGTCGCTGCCCTG
GATGCAGGGCTGGCCTGGGCGACCCTCCAGGGATGAGGAGCTCAGAATTCCAGTCTTCTAATGT
CCACGGACACCTCCCCATCCCTCTAACGTACTGACTATGTCTTTTGATTTAGCATGTCTTCTAT
AGACCTTCCAAAGAGACCCACACTGGCACTGTCACCCCCTAGGAGGGAAGGTGATGGTTGATGT
AGCCCGACGCGCATCTTGTTAATCCGTTCTAATTCCGAGGAGAGTGTGGGTTTAAGATAACACC
TATTAATGCATTGCCACAATAATGTGGGGGTAAGAGAAACGCAGGGACGAAACTTCCAGAAACA
AACCCTCCAGATCGTTCCACAGGAGTGTTCGCCCTCCGGTGTGACTGAACGACCGACCTTGCCC
ATGGCTTCATCCAGACAGCACAGCTGCAGTATGGCTGGACAGAAGCACCTACTGTTCTTGGATA
TTGAAATAAAATAATAAACTTGCAATGATCTTTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001025293 ⟹ NP_001020464

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,935,475 - 75,966,404 (+)	NCBI
Rnor_6.0	18	79,406,381 - 79,437,310 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	RGD
Celera	18	74,572,397 - 74,602,969 (+)	NCBI

Sequence:

show sequence

AAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGA
AGGCCTGGATGTGATGGCATCACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCC
ACAGCAAGTACCATGGACCATGCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCC
TTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGT
ACCCTGGCTAAAGCAGAGCCGGAGCCCTCTGCCTTCTCATGCCCGCAGCCGTCCCGGGCTGTGC
CACATGTACAAGGACTCACACACAAGAACTACCCACTACGGCTCCCTGCCCCAGAAGTCGCAGA
GGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCAAGAACATTGTGACACCTCGTACACCCCC
TCCATCCCAAGGAAAGGGGAGAGGCCTGTCCCTCAGCAGATTTAGCTGGGGAGGAAGAGACAGC
CGCTCTGGATCTCCCATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCC
TCGGCTTCTTAATATAACTGCCTTAAACGTTTAATTCTACTTGCACCAAATAGCTAGTTAGAGC
AGACCCTCTCTTAATCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCACGGCACCCTGACTG
GCTAAAACTGTTTGTCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTCTTCTCTGCCCCGAC
TTGCTCCCCGTGTACCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACACCCTTTCAAGTTCAC
CCCTACTCCATCCTCAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAGCTTCCGTGGGCACT
GCGGATAGACAGGCACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGACTGTGTGGTCCAGG
CTTCCTTTGTTTTCTTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATCAGACAGTCTTGGAG
TGGCTTACACAACGGGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTGTGAGAGTCCAGAGT
GGGGTGGCCCTGGGGACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCAGCTGATTTCGAGCG
TGGCAGAGGGAAGGAAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGGAAACGGGGACTTAG
GGGAACACGCTGGAGATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTCCTCAGTGGCTCCCC
AGAGCAGGTGCTTTTAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCCAAGGACATGGCG
CATCAGGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCA
CTTTAGGGTGGTCAGCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACACTAACCTCAGTGGA
AAAGTAACCATTCCCTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGAGGGTTCCTGTCGCT
GAATCAAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGGGATGAGGAGCTCAG
AATTCCAGTCTTCTAATGTCCACGGACACCTCCCCATCCCTCTAACGTACTGACTATGTCTTTT
GATTTAGCATGTCTTCTATAGACCTTCCAAAGAGACCCACACTGGCACTGTCACCCCCTAGGAG
GGAAGGTGATGGTTGATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTAATTCCGAGGAGAGT
GTGGGTTTAAGATAACACCTATTAATGCATTGCCACAATAATGTGGGGGTAAGAGAAACGCAGG
GACGAAACTTCCAGAAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCGCCCTCCGGTGTGAC
TGAACGACCGACCTTGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTATGGCTGGACAGAAG
CACCTACTGTTCTTGGATATTGAAATAAAATAATAAACTTGCAATGATCTTTGAAAAAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

NM_001025294 ⟹ NP_001020465

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,935,475 - 75,966,404 (+)	NCBI
Rnor_6.0	18	79,406,381 - 79,437,310 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	RGD
Celera	18	74,572,397 - 74,602,969 (+)	NCBI

Sequence:

show sequence

AAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGA
AGGCCTGGATGTGATGGCATCACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCC
ACAGCAAGTACCATGGACCATGCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCC
TTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGA
CTCACACACAAGAACTACCCACTACGGCTCCCTGCCCCAGAAGTCGCAGAGGACCCAAGATGAA
AACCCAGTAGTCCACTTCTTCAAGAACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAA
AGGGGGCCGAGGGGCAGAAGCCAGGATTTGGCTACGGAGGCAGAGCTTCCGACTATAAATCGGC
TCACAAGGGATTCAAGGGGGCCTACGACGCCCAGGGCACGCTTTCCAAAATCTTTAAGCTGGGA
GGAAGAGACAGCCGCTCTGGATCTCCCATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCC
CGAATCCTGCCCTCGGCTTCTTAATATAACTGCCTTAAACGTTTAATTCTACTTGCACCAAATA
GCTAGTTAGAGCAGACCCTCTCTTAATCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCACG
GCACCCTGACTGGCTAAAACTGTTTGTCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTCTT
CTCTGCCCCGACTTGCTCCCCGTGTACCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACACCC
TTTCAAGTTCACCCCTACTCCATCCTCAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAGCT
TCCGTGGGCACTGCGGATAGACAGGCACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGACT
GTGTGGTCCAGGCTTCCTTTGTTTTCTTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATCAG
ACAGTCTTGGAGTGGCTTACACAACGGGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTGTG
AGAGTCCAGAGTGGGGTGGCCCTGGGGACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCAGC
TGATTTCGAGCGTGGCAGAGGGAAGGAAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGGAA
ACGGGGACTTAGGGGAACACGCTGGAGATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTCCT
CAGTGGCTCCCCAGAGCAGGTGCTTTTAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCC
AAGGACATGGCGCATCAGGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCT
GGCCACTTCTCACTTTAGGGTGGTCAGCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACACT
AACCTCAGTGGAAAAGTAACCATTCCCTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGAGG
GTTCCTGTCGCTGAATCAAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGGGA
TGAGGAGCTCAGAATTCCAGTCTTCTAATGTCCACGGACACCTCCCCATCCCTCTAACGTACTG
ACTATGTCTTTTGATTTAGCATGTCTTCTATAGACCTTCCAAAGAGACCCACACTGGCACTGTC
ACCCCCTAGGAGGGAAGGTGATGGTTGATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTAAT
TCCGAGGAGAGTGTGGGTTTAAGATAACACCTATTAATGCATTGCCACAATAATGTGGGGGTAA
GAGAAACGCAGGGACGAAACTTCCAGAAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCGCC
CTCCGGTGTGACTGAACGACCGACCTTGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTATG
GCTGGACAGAAGCACCTACTGTTCTTGGATATTGAAATAAAATAATAAACTTGCAATGATCTTT
GAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_017026 ⟹ NP_058722

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,935,475 - 75,966,404 (+)	NCBI
Rnor_6.0	18	79,406,381 - 79,437,310 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI
RGSC_v3.4	18	78,943,608 - 79,057,329 (+)	RGD
Celera	18	74,572,397 - 74,602,969 (+)	NCBI

Sequence:

show sequence

AAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGA
AGGCCTGGATGTGATGGCATCACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCC
ACAGCAAGTACCATGGACCATGCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCC
TTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGA
CTCACACACAAGAACTACCCACTACGGCTCCCTGCCCCAGAAGTCGCAGAGGACCCAAGATGAA
AACCCAGTAGTCCACTTCTTCAAGAACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAA
AGGGGAGAGGCCTGTCCCTCAGCAGATTTAGCTGGGGAGGAAGAGACAGCCGCTCTGGATCTCC
CATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGCTTCTTAATA
TAACTGCCTTAAACGTTTAATTCTACTTGCACCAAATAGCTAGTTAGAGCAGACCCTCTCTTAA
TCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCACGGCACCCTGACTGGCTAAAACTGTTTG
TCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTCTTCTCTGCCCCGACTTGCTCCCCGTGTA
CCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACACCCTTTCAAGTTCACCCCTACTCCATCCT
CAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAGCTTCCGTGGGCACTGCGGATAGACAGGC
ACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGACTGTGTGGTCCAGGCTTCCTTTGTTTTC
TTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATCAGACAGTCTTGGAGTGGCTTACACAACG
GGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGTGGCCCTGGG
GACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCAGCTGATTTCGAGCGTGGCAGAGGGAAGG
AAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGGAAACGGGGACTTAGGGGAACACGCTGGA
GATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTCCTCAGTGGCTCCCCAGAGCAGGTGCTTT
TAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCCAAGGACATGGCGCATCAGGAAGTGGG
ACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCACTTTAGGGTGGTCA
GCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACACTAACCTCAGTGGAAAAGTAACCATTCC
CTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGAGGGTTCCTGTCGCTGAATCAAGTCGCTG
CCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGGGATGAGGAGCTCAGAATTCCAGTCTTCT
AATGTCCACGGACACCTCCCCATCCCTCTAACGTACTGACTATGTCTTTTGATTTAGCATGTCT
TCTATAGACCTTCCAAAGAGACCCACACTGGCACTGTCACCCCCTAGGAGGGAAGGTGATGGTT
GATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTAATTCCGAGGAGAGTGTGGGTTTAAGATA
ACACCTATTAATGCATTGCCACAATAATGTGGGGGTAAGAGAAACGCAGGGACGAAACTTCCAG
AAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCGCCCTCCGGTGTGACTGAACGACCGACCT
TGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTATGGCTGGACAGAAGCACCTACTGTTCTT
GGATATTGAAATAAAATAATAAACTTGCAATGATCTTTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254997 ⟹ XP_006255059

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,855,963 - 75,966,403 (+)	NCBI
Rnor_6.0	18	79,326,743 - 79,437,309 (+)	NCBI
Rnor_5.0	18	78,385,304 - 78,504,226 (+)	NCBI

Sequence:

show sequence

CGGGAGCGGGGTGCTCGCCCGTCCCCCGAGCAGCCGCTGTCAGTCAGCGCCGCTGCGCGCCAGC
GAGGACGAGCCTCTGGCTCAGGCCGCCAGAGTCTCGCGACCCCGGAACGCAGTACTCGTGCCCC
AGCGACCCCGAGCCCAGCGTTGGGTTCCTTCTGCTGGGCTCCCGGGCCCCACTTGGCGTCCGAT
CCGCAGGCAGCACCGCTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGAAAGCG
AGAATTAGCATCTGAGAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAAAAAAG
AGAAGCGTTGGCAAGCTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGCAGATG
CGATCCAGAACAATGGGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACAGCAGA
CCCAAAGAATAACTGGCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGATCCGC
CTCTTTTCCCGAGATGCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGAGTCCG
ACGAGCTTCAGACCATCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATGGCATC
ACAGAAGAGACCCTCACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGGACCAT
GCCCGGCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCGCTTCT
TTAGCGGTGACAGGGGTGCGCCCAAGCGGGGCTCTGGCAAGGTACCCTGGCTAAAGCAGAGCCG
GAGCCCTCTGCCTTCTCATGCCCGCAGCCGTCCCGGGCTGTGCCACATGTACAAGGACTCACAC
ACAAGAACTACCCACTACGGCTCCCTGCCCCAGAAGTCGCAGAGGACCCAAGATGAAAACCCAG
TAGTCCACTTCTTCAAGAACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAAAGGGGAG
AGGCCTGTCCCTCAGCAGATTTAGCTGGGGGGCCGAGGGGCAGAAGCCAGGATTTGGCTACGGA
GGCAGAGCTTCCGACTATAAATCGGCTCACAAGGGATTCAAGGGGGCCTACGACGCCCAGGGCA
CGCTTTCCAAAATCTTTAAGCTGGGAGGAAGAGACAGCCGCTCTGGATCTCCCATGGCAAGACG
CTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGCTTCTTAATATAACTGCCTTAA
ACGTTTAATTCTACTTGCACCAAATAGCTAGTTAGAGCAGACCCTCTCTTAATCCCGTGGGGCT
GTGAACGCGGCGGGGCCAGGCCCACGGCACCCTGACTGGCTAAAACTGTTTGTCCCTTTTTATT
TGAAGATTGAGTTTCCTCGGGGTCTTCTCTGCCCCGACTTGCTCCCCGTGTACCTTGGTCGACT
CCGGAGGTTCAGGTGCACGGACACCCTTTCAAGTTCACCCCTACTCCATCCTCAGACTTTCTTT
TCACGGCGAGGCGCACCCCTCCAGCTTCCGTGGGCACTGCGGATAGACAGGCACACCGCCAAGG
AGCCAGAGAGCATGGCGCAGGGGACTGTGTGGTCCAGGCTTCCTTTGTTTTCTTTCCCCTAAAG
AGCTTTGTTTTTCCTAACAGGATCAGACAGTCTTGGAGTGGCTTACACAACGGGGGCTTGTGGT
ATGTGAGCACAGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGTGGCCCTGGGGACGCTTCCAGG
CCAGCGGTTCCCTGCACCCCACCAGCTGATTTCGAGCGTGGCAGAGGGAAGGAAAGGGGCGAGC
GGGCTGGGCAATGGACCCGACAGGAAACGGGGACTTAGGGGAACACGCTGGAGATGCCATGTGT
GGCTGCCGAAGGTCACCATCTCTCCTCAGTGGCTCCCCAGAGCAGGTGCTTTTAAGAACCCTGT
TTCCTCTCAGAGCCCAGGGAGAGTCCAAGGACATGGCGCATCAGGAAGTGGGACTGCAGGAGTT
CTCTGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCACTTTAGGGTGGTCAGCGGCAGCTCGC
CATGGCAGTGCCCATTGGTGCACACTAACCTCAGTGGAAAAGTAACCATTCCCTGCCTCTTAGA
AAGAACTCATTCTTAGTTTTAGGAGGGTTCCTGTCGCTGAATCAAGTCGCTGCCCTGGATGCAG
GGCTGGCCTGGGCGACCCTCCAGGGATGAGGAGCTCAGAATTCCAGTCTTCTAATGTCCACGGA
CACCTCCCCATCCCTCTAACGTACTGACTATGTCTTTTGATTTAGCATGTCTTCTATAGACCTT
CCAAAGAGACCCACACTGGCACTGTCACCCCCTAGGAGGGAAGGTGATGGTTGATGTAGCCCGA
CGCGCATCTTGTTAATCCGTTCTAATTCCGAGGAGAGTGTGGGTTTAAGATAACACCTATTAAT
GCATTGCCACAATAATGTGGGGGTAAGAGAAACGCAGGGACGAAACTTCCAGAAACAAACCCTC
CAGATCGTTCCACAGGAGTGTTCGCCCTCCGGTGTGACTGAACGACCGACCTTGCCCATGGCTT
CATCCAGACAGCACAGCTGCAGTATGGCTGGACAGAAGCACCTACTGTTCTTGGATATTGAAAT
AAAATAATAAACTTGCAATGATCTTT

hide sequence

RefSeq Acc Id:

XM_017600845 ⟹ XP_017456334

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,126 - 75,966,403 (+)	NCBI
Rnor_6.0	18	79,351,984 - 79,437,309 (+)	NCBI

Sequence:

show sequence

CTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGAAAGCGAGAATTAGCATCTGA
GAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAAAAAAGAGAAGCGTTGGCAAG
CTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGCAGATGCGATCCAGAACAATG
GGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACAGCAGACCCAAAGAATAACTG
GCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGATCCGCCTCTTTTCCCGAGAT
GCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCA
TCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATGGCATCACAGAAGAGACCCTC
ACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGGACCATGCCCGGCATGGCTTC
CTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGG
GTGCGCCCAAGCGGGGCTCTGGCAAGGACTCACACACAAGAACTACCCACTACGGCTCCCTGCC
CCAGAAGTCGCAGAGGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCAAGAACATTGTGACA
CCTCGTACACCCCCTCCATCCCAAGGAAAGGGGAGAGGCCTGTCCCTCAGCAGATTTAGCTGGG
GGGCCGAGGGGCAGAAGCCAGGATTTGGCTACGGAGGCAGAGCTTCCGACTATAAATCGGCTCA
CAAGGGATTCAAGGGGGCCTACGACGCCCAGGGCACGCTTTCCAAAATCTTTAAGCTGGGAGGA
AGAGACAGCCGCTCTGGATCTCCCATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGA
ATCCTGCCCTCGGCTTCTTAATATAACTGCCTTAAACGTTTAATTCTACTTGCACCAAATAGCT
AGTTAGAGCAGACCCTCTCTTAATCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCACGGCA
CCCTGACTGGCTAAAACTGTTTGTCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTCTTCTC
TGCCCCGACTTGCTCCCCGTGTACCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACACCCTTT
CAAGTTCACCCCTACTCCATCCTCAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAGCTTCC
GTGGGCACTGCGGATAGACAGGCACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGACTGTG
TGGTCCAGGCTTCCTTTGTTTTCTTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATCAGACA
GTCTTGGAGTGGCTTACACAACGGGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTGTGAGA
GTCCAGAGTGGGGTGGCCCTGGGGACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCAGCTGA
TTTCGAGCGTGGCAGAGGGAAGGAAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGGAAACG
GGGACTTAGGGGAACACGCTGGAGATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTCCTCAG
TGGCTCCCCAGAGCAGGTGCTTTTAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCCAAG
GACATGGCGCATCAGGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCTGGC
CACTTCTCACTTTAGGGTGGTCAGCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACACTAAC
CTCAGTGGAAAAGTAACCATTCCCTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGAGGGTT
CCTGTCGCTGAATCAAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGGGATGA
GGAGCTCAGAATTCCAGTCTTCTAATGTCCACGGACACCTCCCCATCCCTCTAACGTACTGACT
ATGTCTTTTGATTTAGCATGTCTTCTATAGACCTTCCAAAGAGACCCACACTGGCACTGTCACC
CCCTAGGAGGGAAGGTGATGGTTGATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTAATTCC
GAGGAGAGTGTGGGTTTAAGATAACACCTATTAATGCATTGCCACAATAATGTGGGGGTAAGAG
AAACGCAGGGACGAAACTTCCAGAAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCGCCCTC
CGGTGTGACTGAACGACCGACCTTGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTATGGCT
GGACAGAAGCACCTACTGTTCTTGGATATTGAAATAAAATAATAAACTTGCAATGATCTTT

hide sequence

RefSeq Acc Id:

XM_017600846 ⟹ XP_017456335

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,123 - 75,966,403 (+)	NCBI
Rnor_6.0	18	79,351,984 - 79,437,309 (+)	NCBI

Sequence:

show sequence

CTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGAAAGCGAGAATTAGCATCTGA
GAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAAAAAAGAGAAGCGTTGGCAAG
CTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGCAGATGCGATCCAGAACAATG
GGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACAGCAGACCCAAAGAATAACTG
GCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGATCCGCCTCTTTTCCCGAGAT
GCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCA
TCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATGGCATCACAGAAGAGACCCTC
ACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGGACCATGCCCGGCATGGCTTC
CTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGG
GTGCGCCCAAGCGGGGCTCTGGCAAGGTACCCTGGCTAAAGCAGAGCCGGAGCCCTCTGCCTTC
TCATGCCCGCAGCCGTCCCGGGCTGTGCCACATGTACAAGGACTCACACACAAGAACTACCCAC
TACGGCTCCCTGCCCCAGAAGTCGCAGAGGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCA
AGAACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAAAGGGGAGAGGCCTGTCCCTCAG
CAGATTTAGCTGGGGAGGAAGAGACAGCCGCTCTGGATCTCCCATGGCAAGACGCTGAGAGCCT
CCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGCTTCTTAATATAACTGCCTTAAACGTTTAATT
CTACTTGCACCAAATAGCTAGTTAGAGCAGACCCTCTCTTAATCCCGTGGGGCTGTGAACGCGG
CGGGGCCAGGCCCACGGCACCCTGACTGGCTAAAACTGTTTGTCCCTTTTTATTTGAAGATTGA
GTTTCCTCGGGGTCTTCTCTGCCCCGACTTGCTCCCCGTGTACCTTGGTCGACTCCGGAGGTTC
AGGTGCACGGACACCCTTTCAAGTTCACCCCTACTCCATCCTCAGACTTTCTTTTCACGGCGAG
GCGCACCCCTCCAGCTTCCGTGGGCACTGCGGATAGACAGGCACACCGCCAAGGAGCCAGAGAG
CATGGCGCAGGGGACTGTGTGGTCCAGGCTTCCTTTGTTTTCTTTCCCCTAAAGAGCTTTGTTT
TTCCTAACAGGATCAGACAGTCTTGGAGTGGCTTACACAACGGGGGCTTGTGGTATGTGAGCAC
AGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGTGGCCCTGGGGACGCTTCCAGGCCAGCGGTTC
CCTGCACCCCACCAGCTGATTTCGAGCGTGGCAGAGGGAAGGAAAGGGGCGAGCGGGCTGGGCA
ATGGACCCGACAGGAAACGGGGACTTAGGGGAACACGCTGGAGATGCCATGTGTGGCTGCCGAA
GGTCACCATCTCTCCTCAGTGGCTCCCCAGAGCAGGTGCTTTTAAGAACCCTGTTTCCTCTCAG
AGCCCAGGGAGAGTCCAAGGACATGGCGCATCAGGAAGTGGGACTGCAGGAGTTCTCTGGTGGC
CTCGTGCTGTCCCTCTGGCCACTTCTCACTTTAGGGTGGTCAGCGGCAGCTCGCCATGGCAGTG
CCCATTGGTGCACACTAACCTCAGTGGAAAAGTAACCATTCCCTGCCTCTTAGAAAGAACTCAT
TCTTAGTTTTAGGAGGGTTCCTGTCGCTGAATCAAGTCGCTGCCCTGGATGCAGGGCTGGCCTG
GGCGACCCTCCAGGGATGAGGAGCTCAGAATTCCAGTCTTCTAATGTCCACGGACACCTCCCCA
TCCCTCTAACGTACTGACTATGTCTTTTGATTTAGCATGTCTTCTATAGACCTTCCAAAGAGAC
CCACACTGGCACTGTCACCCCCTAGGAGGGAAGGTGATGGTTGATGTAGCCCGACGCGCATCTT
GTTAATCCGTTCTAATTCCGAGGAGAGTGTGGGTTTAAGATAACACCTATTAATGCATTGCCAC
AATAATGTGGGGGTAAGAGAAACGCAGGGACGAAACTTCCAGAAACAAACCCTCCAGATCGTTC
CACAGGAGTGTTCGCCCTCCGGTGTGACTGAACGACCGACCTTGCCCATGGCTTCATCCAGACA
GCACAGCTGCAGTATGGCTGGACAGAAGCACCTACTGTTCTTGGATATTGAAATAAAATAATAA
ACTTGCAATGATCTTT

hide sequence

RefSeq Acc Id:

XM_017600847 ⟹ XP_017456336

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,122 - 75,966,403 (+)	NCBI
Rnor_6.0	18	79,351,984 - 79,437,309 (+)	NCBI

Sequence:

show sequence

CTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGAAAGCGAGAATTAGCATCTGA
GAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAAAAAAGAGAAGCGTTGGCAAG
CTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGCAGATGCGATCCAGAACAATG
GGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACAGCAGACCCAAAGAATAACTG
GCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGATCCGCCTCTTTTCCCGAGAT
GCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCA
TCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATGGCATCACAGAAGAGACCCTC
ACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGGACCATGCCCGGCATGGCTTC
CTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGG
GTGCGCCCAAGCGGGGCTCTGGCAAGGTACCCTGGCTAAAGCAGAGCCGGAGCCCTCTGCCTTC
TCATGCCCGCAGCCGTCCCGGGCTGTGCCACATGTACAAGGACTCACACACAAGAACTACCCAC
TACGGCTCCCTGCCCCAGAAGTCGCAGAGGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCA
AGAACATTGTGACACCTCGTACACCCCCTCCATCCCAAGGAAAGGGAGGAAGAGACAGCCGCTC
TGGATCTCCCATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGC
TTCTTAATATAACTGCCTTAAACGTTTAATTCTACTTGCACCAAATAGCTAGTTAGAGCAGACC
CTCTCTTAATCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCACGGCACCCTGACTGGCTAA
AACTGTTTGTCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTCTTCTCTGCCCCGACTTGCT
CCCCGTGTACCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACACCCTTTCAAGTTCACCCCTA
CTCCATCCTCAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAGCTTCCGTGGGCACTGCGGA
TAGACAGGCACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGACTGTGTGGTCCAGGCTTCC
TTTGTTTTCTTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATCAGACAGTCTTGGAGTGGCT
TACACAACGGGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTGTGAGAGTCCAGAGTGGGGT
GGCCCTGGGGACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCAGCTGATTTCGAGCGTGGCA
GAGGGAAGGAAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGGAAACGGGGACTTAGGGGAA
CACGCTGGAGATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTCCTCAGTGGCTCCCCAGAGC
AGGTGCTTTTAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGTCCAAGGACATGGCGCATCA
GGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCTCTGGCCACTTCTCACTTTA
GGGTGGTCAGCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACACTAACCTCAGTGGAAAAGT
AACCATTCCCTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGAGGGTTCCTGTCGCTGAATC
AAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGGGATGAGGAGCTCAGAATTC
CAGTCTTCTAATGTCCACGGACACCTCCCCATCCCTCTAACGTACTGACTATGTCTTTTGATTT
AGCATGTCTTCTATAGACCTTCCAAAGAGACCCACACTGGCACTGTCACCCCCTAGGAGGGAAG
GTGATGGTTGATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTAATTCCGAGGAGAGTGTGGG
TTTAAGATAACACCTATTAATGCATTGCCACAATAATGTGGGGGTAAGAGAAACGCAGGGACGA
AACTTCCAGAAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCGCCCTCCGGTGTGACTGAAC
GACCGACCTTGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTATGGCTGGACAGAAGCACCT
ACTGTTCTTGGATATTGAAATAAAATAATAAACTTGCAATGATCTTT

hide sequence

RefSeq Acc Id:

XM_017600848 ⟹ XP_017456337

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,131 - 75,966,403 (+)	NCBI
Rnor_6.0	18	79,351,984 - 79,437,309 (+)	NCBI

Sequence:

show sequence

CTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGAAAGCGAGAATTAGCATCTGA
GAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAAAAAAGAGAAGCGTTGGCAAG
CTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGCAGATGCGATCCAGAACAATG
GGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACAGCAGACCCAAAGAATAACTG
GCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGATCCGCCTCTTTTCCCGAGAT
GCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCA
TCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATGGCATCACAGAAGAGACCCTC
ACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGGACCATGCCCGGCATGGCTTC
CTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGG
GTGCGCCCAAGCGGGGCTCTGGCAAGGACTCACACACAAGAACTACCCACTACGGCTCCCTGCC
CCAGAAGTCGCAGAGGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCAAGAACATTGTGACA
CCTCGTACACCCCCTCCATCCCAAGGAAAGGGGAGAGGCCTGTCCCTCAGCAGATTTAGCTGGG
GAGGAAGAGACAGCCGCTCTGGATCTCCCATGGCAAGACGCTGAGAGCCTCCCTGCTCAGCCTT
CCCGAATCCTGCCCTCGGCTTCTTAATATAACTGCCTTAAACGTTTAATTCTACTTGCACCAAA
TAGCTAGTTAGAGCAGACCCTCTCTTAATCCCGTGGGGCTGTGAACGCGGCGGGGCCAGGCCCA
CGGCACCCTGACTGGCTAAAACTGTTTGTCCCTTTTTATTTGAAGATTGAGTTTCCTCGGGGTC
TTCTCTGCCCCGACTTGCTCCCCGTGTACCTTGGTCGACTCCGGAGGTTCAGGTGCACGGACAC
CCTTTCAAGTTCACCCCTACTCCATCCTCAGACTTTCTTTTCACGGCGAGGCGCACCCCTCCAG
CTTCCGTGGGCACTGCGGATAGACAGGCACACCGCCAAGGAGCCAGAGAGCATGGCGCAGGGGA
CTGTGTGGTCCAGGCTTCCTTTGTTTTCTTTCCCCTAAAGAGCTTTGTTTTTCCTAACAGGATC
AGACAGTCTTGGAGTGGCTTACACAACGGGGGCTTGTGGTATGTGAGCACAGGCTGGGCAGCTG
TGAGAGTCCAGAGTGGGGTGGCCCTGGGGACGCTTCCAGGCCAGCGGTTCCCTGCACCCCACCA
GCTGATTTCGAGCGTGGCAGAGGGAAGGAAAGGGGCGAGCGGGCTGGGCAATGGACCCGACAGG
AAACGGGGACTTAGGGGAACACGCTGGAGATGCCATGTGTGGCTGCCGAAGGTCACCATCTCTC
CTCAGTGGCTCCCCAGAGCAGGTGCTTTTAAGAACCCTGTTTCCTCTCAGAGCCCAGGGAGAGT
CCAAGGACATGGCGCATCAGGAAGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTCCCT
CTGGCCACTTCTCACTTTAGGGTGGTCAGCGGCAGCTCGCCATGGCAGTGCCCATTGGTGCACA
CTAACCTCAGTGGAAAAGTAACCATTCCCTGCCTCTTAGAAAGAACTCATTCTTAGTTTTAGGA
GGGTTCCTGTCGCTGAATCAAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGACCCTCCAGG
GATGAGGAGCTCAGAATTCCAGTCTTCTAATGTCCACGGACACCTCCCCATCCCTCTAACGTAC
TGACTATGTCTTTTGATTTAGCATGTCTTCTATAGACCTTCCAAAGAGACCCACACTGGCACTG
TCACCCCCTAGGAGGGAAGGTGATGGTTGATGTAGCCCGACGCGCATCTTGTTAATCCGTTCTA
ATTCCGAGGAGAGTGTGGGTTTAAGATAACACCTATTAATGCATTGCCACAATAATGTGGGGGT
AAGAGAAACGCAGGGACGAAACTTCCAGAAACAAACCCTCCAGATCGTTCCACAGGAGTGTTCG
CCCTCCGGTGTGACTGAACGACCGACCTTGCCCATGGCTTCATCCAGACAGCACAGCTGCAGTA
TGGCTGGACAGAAGCACCTACTGTTCTTGGATATTGAAATAAAATAATAAACTTGCAATGATCT
TT

hide sequence

RefSeq Acc Id:

XM_017600849 ⟹ XP_017456338

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,126 - 75,965,049 (+)	NCBI
Rnor_6.0	18	79,351,984 - 79,435,861 (+)	NCBI

Sequence:

show sequence

CTCTTGAACACCCCCACTGGGTCGCCATGGGAAACCACTCTGGAAAGCGAGAATTAGCATCTGA
GAAGGCCAGTAAGGATGGTGAGATTCACCGAGGAGAGGCTGAAAAAAAGAGAAGCGTTGGCAAG
CTTTCTCAGACCGCCTCAGAAGACAGTGATGTGTTTGGGGAGGCAGATGCGATCCAGAACAATG
GGACCTCGGCCGAGGACACAGCGGTGACAGACTCCAAGCACACAGCAGACCCAAAGAATAACTG
GCAGGGTGCCCACCCAGCTGACCCAGGGAACCGCCCCCACTTGATCCGCCTCTTTTCCCGAGAT
GCCCCGGGAAGGGAGGACAACACCTTCAAAGACAGGCCCTCAGAGTCCGACGAGCTTCAGACCA
TCCAAGAAGATCCCACAGCAGCTTCCGAAGGCCTGGATGTGATGGCATCACAGAAGAGACCCTC
ACAGCGACACGGATCCAAGTACTTGGCCACAGCAAGTACCATGGACCATGCCCGGCATGGCTTC
CTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCGCTTCTTTAGCGGTGACAGGG
GTGCGCCCAAGCGGGGCTCTGGCAAGGACTCACACACAAGAACTACCCACTACGGCTCCCTGCC
CCAGAAGTCGCAGAGGACCCAAGATGAAAACCCAGTAGTCCACTTCTTCAAGAACATTGTGACA
CCTCGTACACCCCCTCCATCCCAAGGAAAGGGAGGAAGAGACAGCCGCTCTGGATCTCCCATGG
CAAGACGCTGAGAGCCTCCCTGCTCAGCCTTCCCGAATCCTGCCCTCGGCTTCTTAA

hide sequence

RefSeq Acc Id:

XM_039096568 ⟹ XP_038952496

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,122 - 75,966,403 (+)	NCBI

RefSeq Acc Id:

XM_039096569 ⟹ XP_038952497

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,872,056 - 75,966,403 (+)	NCBI

RefSeq Acc Id:

XM_039096570 ⟹ XP_038952498

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,881,124 - 75,966,403 (+)	NCBI

RefSeq Acc Id:

XM_039096571 ⟹ XP_038952499

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	75,917,349 - 75,966,403 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020460	(Get FASTA)	NCBI Sequence Viewer
	NP_001020462	(Get FASTA)	NCBI Sequence Viewer
	NP_001020463	(Get FASTA)	NCBI Sequence Viewer
	NP_001020464	(Get FASTA)	NCBI Sequence Viewer
	NP_001020465	(Get FASTA)	NCBI Sequence Viewer
	NP_058722	(Get FASTA)	NCBI Sequence Viewer
	XP_006255059	(Get FASTA)	NCBI Sequence Viewer
	XP_017456334	(Get FASTA)	NCBI Sequence Viewer
	XP_017456335	(Get FASTA)	NCBI Sequence Viewer
	XP_017456336	(Get FASTA)	NCBI Sequence Viewer
	XP_017456337	(Get FASTA)	NCBI Sequence Viewer
	XP_017456338	(Get FASTA)	NCBI Sequence Viewer
	XP_038952496	(Get FASTA)	NCBI Sequence Viewer
	XP_038952497	(Get FASTA)	NCBI Sequence Viewer
	XP_038952498	(Get FASTA)	NCBI Sequence Viewer
	XP_038952499	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41575	(Get FASTA)	NCBI Sequence Viewer
	AAH84713	(Get FASTA)	NCBI Sequence Viewer
	AAH94522	(Get FASTA)	NCBI Sequence Viewer
	AAL84189	(Get FASTA)	NCBI Sequence Viewer
	AAO60966	(Get FASTA)	NCBI Sequence Viewer
	AFP20581	(Get FASTA)	NCBI Sequence Viewer
	AFP20582	(Get FASTA)	NCBI Sequence Viewer
	CAA10804	(Get FASTA)	NCBI Sequence Viewer
	CAA10805	(Get FASTA)	NCBI Sequence Viewer
	CAA10806	(Get FASTA)	NCBI Sequence Viewer
	CAA10807	(Get FASTA)	NCBI Sequence Viewer
	EDL75206	(Get FASTA)	NCBI Sequence Viewer
	EDL75207	(Get FASTA)	NCBI Sequence Viewer
	EDL75208	(Get FASTA)	NCBI Sequence Viewer
	EDL75209	(Get FASTA)	NCBI Sequence Viewer
	P02688	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001020460 ⟸ NM_001025289
- Peptide Label:	isoform 1
- UniProtKB:	Q5XFW1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK VSSEA hide sequence

RefSeq Acc Id:	NP_001020462 ⟸ NM_001025291
- Peptide Label:	isoform 1
- UniProtKB:	P02688 (UniProtKB/Swiss-Prot), I7FKL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKVPWLK QSRSPLPSHARSRPGLCHMYKDSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQG KGRGLSLSRFSWGAEGQKPGFGYGGRASDYKSAHKGFKGAYDAQGTLSKIFKLGGRDSRSGSPM ARR hide sequence

RefSeq Acc Id:	NP_001020463 ⟸ NM_001025292
- Peptide Label:	isoform 2
- UniProtKB:	P02688 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKDSHTR TTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGR ASDYKSAHKGFKGAYDAQGTLSKIFKLGGRDSRSGSPMARR hide sequence

RefSeq Acc Id:	NP_001020464 ⟸ NM_001025293
- Peptide Label:	isoform 3
- UniProtKB:	P02688 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKVPWLK QSRSPLPSHARSRPGLCHMYKDSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQG KGRGLSLSRFSWGGRDSRSGSPMARR hide sequence

RefSeq Acc Id:	NP_001020465 ⟸ NM_001025294
- Peptide Label:	isoform 4
- UniProtKB:	P02688 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKDSHTR TTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQKPGFGYGGRASDYKSAHKGF KGAYDAQGTLSKIFKLGGRDSRSGSPMARR hide sequence

RefSeq Acc Id:	NP_058722 ⟸ NM_017026
- Peptide Label:	isoform 5
- UniProtKB:	P02688 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKDSHTR TTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGGRDSRSGSPMARR hide sequence

RefSeq Acc Id:

XP_006255059 ⟸ XM_006254997

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV
TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS
EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK
VPWLKQSRSPLPSHARSRPGLCHMYKDSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTP
PPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRASDYKSAHKGFKGAYDAQGTLSKIFKLGGRDSR
SGSPMARR

hide sequence

RefSeq Acc Id:

XP_017456335 ⟸ XM_017600846

- Peptide Label:

isoform X5

- Sequence:

show sequence

MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV
TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS
EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK
VPWLKQSRSPLPSHARSRPGLCHMYKDSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTP
PPSQGKGRGLSLSRFSWGGRDSRSGSPMARR

hide sequence

RefSeq Acc Id:

XP_017456336 ⟸ XM_017600847

- Peptide Label:

isoform X6

- Sequence:

show sequence

MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV
TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS
EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK
VPWLKQSRSPLPSHARSRPGLCHMYKDSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTP
PPSQGKGGRDSRSGSPMARR

hide sequence

RefSeq Acc Id:

XP_017456334 ⟸ XM_017600845

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV
TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS
EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK
DSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGF
GYGGRASDYKSAHKGFKGAYDAQGTLSKIFKLGGRDSRSGSPMARR

hide sequence

RefSeq Acc Id:

XP_017456337 ⟸ XM_017600848

- Peptide Label:

isoform X7

- Sequence:

show sequence

MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV
TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS
EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK
DSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGGRDSRSGS
PMARR

hide sequence

RefSeq Acc Id:

XP_017456338 ⟸ XM_017600849

- Peptide Label:

isoform X9

- Sequence:

show sequence

MGNHSGKRELASEKASKDGEIHRGEAEKKRSVGKLSQTASEDSDVFGEADAIQNNGTSAEDTAV
TDSKHTADPKNNWQGAHPADPGNRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDPTAAS
EGLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK
DSHTRTTHYGSLPQKSQRTQDENPVVHFFKNIVTPRTPPPSQGKGGRDSRSGSPMARR

hide sequence

RefSeq Acc Id:

ENSRNOP00000070157 ⟸ ENSRNOT00000089879

RefSeq Acc Id:

ENSRNOP00000022303 ⟸ ENSRNOT00000022303

RefSeq Acc Id:

ENSRNOP00000055097 ⟸ ENSRNOT00000058295

RefSeq Acc Id:

ENSRNOP00000055098 ⟸ ENSRNOT00000058296

RefSeq Acc Id:

ENSRNOP00000022280 ⟸ ENSRNOT00000022280

RefSeq Acc Id:	XP_038952497 ⟸ XM_039096569
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038952496 ⟸ XM_039096568
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038952498 ⟸ XM_039096570
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038952499 ⟸ XM_039096571
- Peptide Label:	isoform X8

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700892

Promoter ID:

EPDNEW_R11416

Type:

multiple initiation site

Name:

Mbp_1

Description:

myelin basic protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11417

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	79,326,784 - 79,326,844	EPDNEW

RGD ID:

13700893

Promoter ID:

EPDNEW_R11417

Type:

multiple initiation site

Name:

Mbp_2

Description:

myelin basic protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11416

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	79,406,411 - 79,406,471	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
18	78473376	78473377	G	C	snv	F344/Jcl (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3054	AgrOrtholog
Ensembl Genes	ENSRNOG00000016516	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000022280	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000022303	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000055097	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000055098	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000070157	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022280	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000022303	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000058295	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000058296	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000089879	ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7303731	IMAGE-MGC_LOAD
	IMAGE:7316167	IMAGE-MGC_LOAD
InterPro	Myelin_BP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:24547	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105460	IMAGE-MGC_LOAD
	MGC:105461	IMAGE-MGC_LOAD
NCBI Gene	24547	ENTREZGENE
PANTHER	PTHR11429	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Myelin_MBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mbp	PhenoGen
PRINTS	MYELINMBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	MYELIN_MBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	I7EFB0_RAT	UniProtKB/TrEMBL
	I7FKL4	ENTREZGENE, UniProtKB/TrEMBL
	MBP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5XFW1	ENTREZGENE, UniProtKB/TrEMBL
	Q80Z98_RAT	UniProtKB/TrEMBL
UniProt Secondary	Q505J1	UniProtKB/Swiss-Prot
	Q8R4K6	UniProtKB/Swiss-Prot
	Q9Z1J4	UniProtKB/Swiss-Prot
	Q9Z1J5	UniProtKB/Swiss-Prot
	Q9Z1J6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Mbp	Myelin basic protein			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	extrinsic membrane protein	729337
gene_regulation	promoter activity is enhanced by Phosphatidylinositol-3 kinase (PI3K) p85 subunit in primary oligodendrocytes	729112

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD