Fubp1 (far upstream element binding protein 1) - Rat Genome Database

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Gene: Fubp1 (far upstream element binding protein 1) Rattus norvegicus
Analyze
Symbol: Fubp1
Name: far upstream element binding protein 1
RGD ID: 1591892
Description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and mRNA binding activity. Involved in cellular response to lipopolysaccharide; positive regulation of Schwann cell migration; and response to nutrient levels. Located in nucleus. Biomarker of sciatic neuropathy. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human FUBP1 (far upstream element binding protein 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: far upstream element (FUSE) binding protein 1; far upstream element-binding protein 1; FBP; FUSE-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22241,159,481 - 241,186,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,973,302 - 248,996,209 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02246,860,320 - 246,883,226 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02241,759,691 - 241,782,653 (+)NCBIRnor_WKY
Rnor_6.02257,425,676 - 257,452,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,102,238 - 276,129,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,749,095 - 250,777,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,094,240 - 233,117,161 (+)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
butyric acid  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hexadecanoic acid  (ISO)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quinoline  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
tanespimycin  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,IEA,ISO)
synapse  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Upregulation of far upstream element-binding protein 1 (FUBP1) promotes tumor proliferation and unfavorable prognosis in tongue squamous cell carcinoma. Chen Y, etal., Int J Biol Markers. 2020 Jun;35(2):56-65. doi: 10.1177/1724600820912252. Epub 2020 Apr 27.
2. FUSE Binding Protein 1 Facilitates Persistent Hepatitis C Virus Replication in Hepatoma Cells by Regulating Tumor Suppressor p53. Dixit U, etal., J Virol. 2015 Aug;89(15):7905-21. doi: 10.1128/JVI.00729-15. Epub 2015 May 20.
3. Far upstream element-binding protein 1 facilitates hepatocellular carcinoma invasion and metastasis. Fu PY, etal., Carcinogenesis. 2020 Jul 14;41(7):950-960. doi: 10.1093/carcin/bgz171.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Fasting for 3 days during the suckling-weaning transient period in male rats induces metabolic abnormalities in the liver and is associated with impaired glucose tolerance in adulthood. Ikeda M, etal., Eur J Nutr. 2016 Apr;55(3):1059-67. doi: 10.1007/s00394-015-0919-9. Epub 2015 May 6.
6. Far upstream element-binding protein 1(FUBP1) expression differs between human colorectal cancer and non-cancerous tissue. Jia MY and Wang YJ, Neoplasma. 2014;61(5):533-40. doi: 10.4149/neo_2014_065.
7. Multiple Functions of Fubp1 in Cell Cycle Progression and Cell Survival. Kang M, etal., Cells. 2020 May 28;9(6). pii: cells9061347. doi: 10.3390/cells9061347.
8. Far upstream element-binding protein 1 is a prognostic biomarker and promotes nasopharyngeal carcinoma progression. Liu ZH, etal., Cell Death Dis. 2015 Oct 15;6:e1920. doi: 10.1038/cddis.2015.258.
9. Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth. Rabenhorst U, etal., Hepatology. 2009 Oct;50(4):1121-9. doi: 10.1002/hep.23098.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. MiR-16 mediates trastuzumab and lapatinib response in ErbB-2-positive breast and gastric cancer via its novel targets CCNJ and FUBP1. Venturutti L, etal., Oncogene. 2016 Dec 1;35(48):6189-6202. doi: 10.1038/onc.2016.151. Epub 2016 May 9.
14. FBP1 promotes ovarian cancer development through the acceleration of cell cycle transition and metastasis. Xiong X, etal., Oncol Lett. 2018 Aug;16(2):1682-1688. doi: 10.3892/ol.2018.8872. Epub 2018 Jun 1.
15. Far upstream element-binding protein 1 (FUBP1) is a potential c-Myc regulator in esophageal squamous cell carcinoma (ESCC) and its expression promotes ESCC progression. Yang L, etal., Tumour Biol. 2016 Mar;37(3):4115-26. doi: 10.1007/s13277-015-4263-8. Epub 2015 Oct 21.
16. FBP1 and p27kip1 expression after sciatic nerve injury: implications for Schwann cells proliferation and differentiation. Yao L, etal., J Cell Biochem. 2014 Jan;115(1):130-40. doi: 10.1002/jcb.24640.
17. Far upstream element-binding protein 1 (FUBP1) is overexpressed in human gastric cancer tissue compared to non-cancerous tissue. Zhang F, etal., Onkologie. 2013;36(11):650-5. doi: 10.1159/000355659. Epub 2013 Oct 14.
18. Knockdown of FUSE binding protein 1 enhances the sensitivity of epithelial ovarian cancer cells to carboplatin. Zhang J, etal., Oncol Lett. 2017 Nov;14(5):5819-5824. doi: 10.3892/ol.2017.6978. Epub 2017 Sep 15.
19. MiR-16-1 Targeted Silences Far Upstream Element Binding Protein 1 to Advance the Chemosensitivity to Adriamycin in Gastric Cancer. Zhao D, etal., Pathol Oncol Res. 2018 Jul;24(3):483-488. doi: 10.1007/s12253-017-0263-x. Epub 2017 Jun 30.
20. The expression of FBP1 after traumatic brain injury and its role in astrocyte proliferation. Zhao W, etal., J Mol Neurosci. 2013 Nov;51(3):687-94. doi: 10.1007/s12031-013-0049-x.
Additional References at PubMed
PMID:12477932   PMID:16452087   PMID:18836447   PMID:19087307   PMID:22658674   PMID:22681889   PMID:26095368  


Genomics

Comparative Map Data
Fubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22241,159,481 - 241,186,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,973,302 - 248,996,209 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02246,860,320 - 246,883,226 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02241,759,691 - 241,782,653 (+)NCBIRnor_WKY
Rnor_6.02257,425,676 - 257,452,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,102,238 - 276,129,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,749,095 - 250,777,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,094,240 - 233,117,161 (+)NCBICelera
Cytogenetic Map2q45NCBI
FUBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,944,055 - 77,979,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl177,944,055 - 77,979,110 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,409,740 - 78,444,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,186,179 - 78,217,365 (-)NCBINCBI36Build 36hg18NCBI36
Build 34178,126,110 - 78,156,735NCBI
Celera176,652,669 - 76,683,855 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,545,210 - 76,576,401 (-)NCBIHuRef
CHM1_1178,529,931 - 78,561,136 (-)NCBICHM1_1
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBIT2T-CHM13v2.0
Fubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,916,059 - 151,942,467 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,916,059 - 151,942,463 (+)EnsemblGRCm39 Ensembl
GRCm383152,210,422 - 152,236,830 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,210,422 - 152,236,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv373151,873,422 - 151,899,794 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,147,907 - 152,174,212 (+)NCBIMGSCv36mm8
Celera3158,688,293 - 158,714,689 (+)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.05NCBI
Fubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,245,610 - 15,278,628 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,245,645 - 15,278,628 (+)NCBIChiLan1.0ChiLan1.0
FUBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,244,892 - 79,280,448 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0177,162,675 - 77,198,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FUBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,923,215 - 68,963,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,580,919 - 71,621,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,508,282 - 69,548,642 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,508,277 - 69,548,630 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1669,015,218 - 69,054,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,959,769 - 69,000,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,446,187 - 69,486,514 (+)NCBIUU_Cfam_GSD_1.0
Fubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,218,777 - 89,250,519 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365714,729,135 - 4,760,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,281,521 - 135,318,714 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,281,474 - 135,319,055 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,463,226 - 125,500,521 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,194,743 - 55,230,277 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,279,926 - 62,320,345 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fubp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474219,279,544 - 19,313,139 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D2Rat106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,180,224 - 241,180,458 (+)MAPPERmRatBN7.2
Rnor_6.02257,446,379 - 257,446,612NCBIRnor6.0
Rnor_5.02276,123,126 - 276,123,359UniSTSRnor5.0
RGSC_v3.42250,755,359 - 250,755,592UniSTSRGSC3.4
RGSC_v3.42250,755,328 - 250,755,690RGDRGSC3.4
RGSC_v3.12250,769,966 - 250,770,199RGD
Celera2233,114,890 - 233,115,123UniSTS
RH 3.4 Map21650.32RGD
RH 3.4 Map21650.32UniSTS
RH 2.0 Map21224.5RGD
SHRSP x BN Map2110.2099RGD
FHH x ACI Map2112.8599RGD
Cytogenetic Map2q45UniSTS
RH130397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22226,377,844 - 226,378,048 (+)MAPPERmRatBN7.2
mRatBN7.22241,186,236 - 241,186,430 (+)MAPPERmRatBN7.2
Rnor_6.02257,452,391 - 257,452,584NCBIRnor6.0
Rnor_6.02243,127,299 - 243,127,502NCBIRnor6.0
Rnor_5.02276,129,138 - 276,129,331UniSTSRnor5.0
Rnor_5.02261,675,035 - 261,675,238UniSTSRnor5.0
RGSC_v3.42235,375,102 - 235,375,305UniSTSRGSC3.4
RGSC_v3.42250,760,862 - 250,761,055UniSTSRGSC3.4
Celera2233,120,904 - 233,121,097UniSTS
Celera2218,544,327 - 218,544,530UniSTS
RH 3.4 Map21607.5UniSTS
Cytogenetic Map2q44UniSTS
Cytogenetic Map2q45UniSTS
AA799423  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,186,902 - 241,186,998 (+)MAPPERmRatBN7.2
Rnor_6.02257,453,057 - 257,453,152NCBIRnor6.0
Rnor_5.02276,129,804 - 276,129,899UniSTSRnor5.0
RGSC_v3.42250,761,528 - 250,761,623UniSTSRGSC3.4
Celera2233,121,570 - 233,121,665UniSTS
RH 3.4 Map21650.31UniSTS
Cytogenetic Map2q45UniSTS
A62227834FB73  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,184,233 - 241,185,481 (+)MAPPERmRatBN7.2
mRatBN7.22241,184,233 - 241,185,515 (+)MAPPERmRatBN7.2
Rnor_6.02257,450,388 - 257,451,669NCBIRnor6.0
Rnor_6.02257,450,388 - 257,451,635NCBIRnor6.0
Rnor_5.02276,127,135 - 276,128,416UniSTSRnor5.0
Rnor_5.02276,127,135 - 276,128,382UniSTSRnor5.0
RGSC_v3.42250,758,861 - 250,760,106UniSTSRGSC3.4
RGSC_v3.42250,758,861 - 250,760,140UniSTSRGSC3.4
Celera2233,118,899 - 233,120,182UniSTS
Celera2233,118,899 - 233,120,146UniSTS
Cytogenetic Map2q45UniSTS
UniSTS:234848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,183,678 - 241,183,917 (+)MAPPERmRatBN7.2
Rnor_6.02257,449,833 - 257,450,071NCBIRnor6.0
Rnor_5.02276,126,580 - 276,126,818UniSTSRnor5.0
RGSC_v3.42250,758,306 - 250,758,544UniSTSRGSC3.4
Celera2233,118,344 - 233,118,582UniSTS
Cytogenetic Map2q45UniSTS
FUBP1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,182,320 - 241,182,476 (+)MAPPERmRatBN7.2
Rnor_6.02257,448,475 - 257,448,630NCBIRnor6.0
Rnor_5.02276,125,222 - 276,125,377UniSTSRnor5.0
Celera2233,116,986 - 233,117,141UniSTS
Cytogenetic Map2q45UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87hepatic copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:43
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000066199
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 52 36 19 36 8 8 74 35 41 11 8
Low 5 5 5 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC107942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066199   ⟹   ENSRNOP00000061544
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,159,528 - 241,182,495 (+)Ensembl
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094623   ⟹   ENSRNOP00000077531
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110491   ⟹   ENSRNOP00000095243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,159,512 - 241,182,511 (+)Ensembl
RefSeq Acc Id: NM_001037653   ⟹   NP_001032742
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,576 - 241,182,496 (+)NCBI
Rnor_6.02257,425,729 - 257,448,650 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
RGSC_v3.42250,749,095 - 250,777,521 (+)RGD
Celera2233,094,240 - 233,117,161 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233507   ⟹   XP_006233569
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,691 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233511   ⟹   XP_006233573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233512   ⟹   XP_006233574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233513   ⟹   XP_006233575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761555   ⟹   XP_008759777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761556   ⟹   XP_008759778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103100   ⟹   XP_038959028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103101   ⟹   XP_038959029
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103102   ⟹   XP_038959030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103103   ⟹   XP_038959031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103105   ⟹   XP_038959033
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103106   ⟹   XP_038959034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103107   ⟹   XP_038959035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103108   ⟹   XP_038959036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103109   ⟹   XP_038959037
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103110   ⟹   XP_038959038
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103111   ⟹   XP_038959039
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103113   ⟹   XP_038959041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XR_005500367
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XR_005500368
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XR_591394
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,691 - 257,452,745 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001032742   ⟸   NM_001037653
- UniProtKB: Q32PX7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006233569   ⟸   XM_006233507
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006233573   ⟸   XM_006233511
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006233574   ⟸   XM_006233512
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006233575   ⟸   XM_006233513
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_008759777   ⟸   XM_008761555
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_008759778   ⟸   XM_008761556
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: ENSRNOP00000061544   ⟸   ENSRNOT00000066199
RefSeq Acc Id: XP_038959028   ⟸   XM_039103100
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959033   ⟸   XM_039103105
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959030   ⟸   XM_039103102
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959039   ⟸   XM_039103111
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038959029   ⟸   XM_039103101
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959038   ⟸   XM_039103110
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038959041   ⟸   XM_039103113
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038959031   ⟸   XM_039103103
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959034   ⟸   XM_039103106
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959036   ⟸   XM_039103108
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038959035   ⟸   XM_039103107
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038959037   ⟸   XM_039103109
- Peptide Label: isoform X10
RefSeq Acc Id: ENSRNOP00000077531   ⟸   ENSRNOT00000094623
RefSeq Acc Id: ENSRNOP00000095243   ⟸   ENSRNOT00000110491
Protein Domains
KH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32PX7-F1-model_v2 AlphaFold Q32PX7 1-639 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691824
Promoter ID:EPDNEW_R2349
Type:initiation region
Name:Fubp1_1
Description:far upstream element binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02257,425,679 - 257,425,739EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591892 AgrOrtholog
BioCyc Gene G2FUF-50806 BioCyc
Ensembl Genes ENSRNOG00000043370 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061544 ENTREZGENE
  ENSRNOP00000061544.4 UniProtKB/TrEMBL
  ENSRNOP00000077531 ENTREZGENE
  ENSRNOP00000077531.1 UniProtKB/TrEMBL
  ENSRNOP00000095243.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066199 ENTREZGENE
  ENSRNOT00000066199.4 UniProtKB/TrEMBL
  ENSRNOT00000094623 ENTREZGENE
  ENSRNOT00000094623.1 UniProtKB/TrEMBL
  ENSRNOT00000110491.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7389449 IMAGE-MGC_LOAD
InterPro FUBP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:654496 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125009 IMAGE-MGC_LOAD
NCBI Gene 654496 ENTREZGENE
Pfam DUF1897 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fubp1 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TAJ3_RAT UniProtKB/TrEMBL
  A0A8I5YBV8_RAT UniProtKB/TrEMBL
  A0A8I6APY2_RAT UniProtKB/TrEMBL
  FUBP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Fubp1  far upstream element binding protein 1  Fubp1  far upstream element (FUSE) binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Fubp1  far upstream element binding protein 1  Fubp1  far upstream element binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 Fubp1  far upstream element (FUSE) binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL