Hcuc3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Hcuc3 (Hepatic copper content QTL 3) Rattus norvegicus

Symbol: Hcuc3
Name: Hepatic copper content QTL 3
RGD ID: 631563
Trait: liver copper amount   (VT:0003065)    
Measurement Type: liver copper weight to liver dry weight ratio   (CMO:0001512)    
LOD Score: 3.87
P Value: Not Available
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22229,059,610 - 249,053,267RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02245,893,572 - 266,435,125RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02242,993,417 - 264,423,632RGDRnor5.0
RGSC_v3.42217,985,582 - 238,139,978RGDRGSC3.4
RGSC_v3.12217,948,644 - 238,126,718RGD
Cross Type: Not Available
Strains Crossed: BC/CpbU LEW/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Hsd3b5 is a candidate Gene for Hcuc3

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BC/CpbU  (IEA)
LEW/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci influencing hepatic copper in rats. de Wolf ID, etal., Exp Biol Med (Maywood) 2002 Jul;227(7):529-34.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41096450LOC120100956uncharacterized LOC1201009562229528518229545145Rat
9089379LOC103691720uncharacterized LOC1036917202229741900229876749Rat
620095Pdha2pyruvate dehydrogenase E1 subunit alpha 22229872300229873848Rat
735109Unc5cunc-5 netrin receptor C2230180353230535219Rat
1595863Bmpr1bbone morphogenetic protein receptor type 1B2230538252230871077Rat
621076Pdlim5PDZ and LIM domain 52230952251231120329Rat
41040699Rpl39-ps9ribosomal protein L39, pseudogene 92231154550231158955Rat
1311040Gbp5guanylate binding protein 52231237748231257071Rat
1583235Gbp7guanylate binding protein 72231275521231297289Rat
1310579Gbp4guanylate binding protein 42231304910231318883Rat
621810Gbp2guanylate binding protein 22231332488231348573Rat
1311877Gbp1guanylate binding protein 12231398136231432773Rat
1597766Gbp3guanylate binding protein 32231460032231500266Rat
41121145LOC120101154U6 spliceosomal RNA2231513755231513861Rat
1560801Gbp1-ps1guanylate binding protein 1, pseudogene 12231517485231525865Rat
1584233Gbp6-ps2guanylate binding protein 6, pseudogene 22231643579231672818Rat
1359262Kyat3kynurenine aminotransferase 32231701881231747462Rat
11361756LOC108350125uncharacterized LOC1083501252231759164231767187Rat
619735Gtf2bgeneral transcription factor IIB2231767317231785626Rat
41219769Rnu6-503RNA, U6 small nuclear 5032231776535231776641Rat
620146Pkn2protein kinase N22231793584231898953Rat
7740925LOC102546591uncharacterized LOC1025465912231915170231944275Rat
41182245LOC120100957uncharacterized LOC1201009572231978621231987035Rat
11452044LOC108350126uncharacterized LOC1083501262232084651232087782Rat
41097702LOC120100959uncharacterized LOC1201009592232435038232454741Rat
41187575LOC120100958uncharacterized LOC1201009582232439706232462245Rat
7633711LOC102546938uncharacterized LOC1025469382232552428232604876Rat
41208624LOC120100960uncharacterized LOC1201009602233102614233153460Rat
41287178LOC120100961uncharacterized LOC1201009612233138097233143134Rat
1305670Lmo4LIM domain only 42233264180233280881Rat
11484619LOC108350128uncharacterized LOC1083501282233470949233477899Rat
7597955LOC102549483uncharacterized LOC1025494832233490907233505798Rat
1305366Hs2st1heparan sulfate 2-O-sulfotransferase 12233508018233641769Rat
621291Selenofselenoprotein F2233642075233674853Rat
41169203LOC120100962uncharacterized LOC1201009622233642432233645492Rat
40954943LOC120100963uncharacterized LOC1201009632233732380233740609Rat
1304859Sh3glb1SH3 domain -containing GRB2-like endophilin B12233750838233784817Rat
621100Clca5chloride channel accessory 52233796569233818867Rat
1591945Clca4lchloride channel calcium activated 4-like2233826133233846137Rat
7715322LOC102549543uncharacterized LOC1025495432233826602233865540Rat
1303234Clca4chloride channel accessory 42233883625233904993Rat
1306258Clca1chloride channel accessory 12233938677233964369Rat
1304894Clca2chloride channel accessory 22233993619234022691Rat
1593831Odf2louter dense fiber of sperm tails 2-like2234036049234072751Rat
1565539Col24a1collagen type XXIV alpha 1 chain2234212256234469445Rat
1308723Znhit6zinc finger, HIT-type containing 62234486686234517952Rat
41217598LOC120101145U6 spliceosomal RNA2234500049234500155Rat
620763Ccn1cellular communication network factor 12234562410234565370Rat
7709092LOC102553018uncharacterized LOC1025530182234565400234641070Rat
70968Ddah1dimethylarginine dimethylaminohydrolase 12234667499234800322Rat
40962343LOC120100964uncharacterized LOC1201009642234780480234783439Rat
620544Bcl10BCL10, immune signaling adaptor2234840880234850520Rat
1560065C2h1orf52similar to human chromosome 1 open reading frame 522234853378234860045Rat
41195544Rnu5e-5RNA, U5E small nuclear 52234864277234864392Rat
1564206Syde2synapse defective Rho GTPase homolog 22234897975234930994Rat
1563105Dnai3dynein axonemal intermediate chain 32234947910235006173Rat
1308420Mcoln3mucolipin TRP cation channel 32235008716235042885Rat
1308884Mcoln2mucolipin TRP cation channel 22235053816235102703Rat
620565Lpar3lysophosphatidic acid receptor 32235125234235193916Rat
41114961Rnu6-777RNA, U6 small nuclear 7772235281040235281138Rat
708490Ssx2ipSSX family member 2 interacting protein2235298012235330750Rat
621338Ctbschitobiase2235340520235355091Rat
1359500Spata1spermatogenesis associated 12235349126235394578Rat
620807Gng5G protein subunit gamma 52235394680235403177Rat
1559755Rpf1ribosome production factor 12235403020235417546Rat
70901Dnase2bdeoxyribonuclease 2 beta2235470915235515211Rat
621369Uoxurate oxidase2235486867235523053Rat
708544Samd13sterile alpha motif domain containing 132235534699235540527Rat
41364636LOC120100965uncharacterized LOC1201009652235540646235542542Rat
40988647LOC120100966uncharacterized LOC1201009662235554316235556702Rat
1310574Prkacbprotein kinase cAMP-activated catalytic subunit beta2235636878235726928Rat
1566117Ttll7tubulin tyrosine ligase like 72235765786235889047Rat
11471726LOC108350293uncharacterized LOC1083502932236209335236213311Rat
40936735LOC120100967uncharacterized LOC1201009672236345988236352811Rat
41063911LOC120100969uncharacterized LOC1201009692236842537236851959Rat
41330340LOC120100968uncharacterized LOC1201009682236847492236881086Rat
2320955Esd-ps1esterase D, pseudogene 12237054176237055006Rat
41340482LOC120101330small nucleolar RNA SNORA172237234034237234163Rat
620835Adgrl2adhesion G protein-coupled receptor L22237696055238327141Rat
41141506LOC120101103uncharacterized LOC1201011032237751769237771224Rat
7705196LOC102547720uncharacterized LOC1025477202237932068237940538Rat
7526141LOC102547649uncharacterized LOC1025476492238137914238161725Rat
41251367LOC120101209U6 spliceosomal RNA2238220051238220154Rat
41294353LOC120101101uncharacterized LOC1201011012238222160238235082Rat
7563133LOC102547779uncharacterized LOC1025477792238387843238393363Rat
7603781LOC102547949uncharacterized LOC1025479492238524961238644513Rat
40941651LOC120101360small nucleolar RNA SNORA172238885848238885934Rat
7566012LOC102548042uncharacterized LOC1025480422239209201239226143Rat
11376688LOC108350139uncharacterized LOC1083501392239342624239423222Rat
41361361LOC120100970uncharacterized LOC1201009702239423440239435136Rat
7508827LOC102548237uncharacterized LOC1025482372239641025239655905Rat
2265Calm2-ps1calmodulin 2, pseudogene 12239897888239899007Rat
9285423LOC103691735uncharacterized LOC1036917352240213258240214625Rat
621136Adgrl4adhesion G protein-coupled receptor L42240354909240457231Rat
7682235LOC102548445uncharacterized LOC1025484452240490785240503872Rat
1310523Ifi44interferon-induced protein 442240626058240643879Rat
1595861Ifi44linterferon-induced protein 44-like2240668742240706425Rat
3436Ptgfrprostaglandin F receptor2240731185240766674Rat
9349957LOC103691736proteasome maturation protein pseudogene2240786521240786947Rat
1585253Ptp4a1l2protein tyrosine phosphatase 4A1 like 22240806880240807884Rat
41037774LOC120101214U7 small nuclear RNA2240874055240874116Rat
11426388LOC10835029540S ribosomal protein S6 pseudogene2240913042240913845Rat
7588281LOC102548701uncharacterized LOC1025487012240942249240945720Rat
1560751Gipc2GIPC PDZ domain containing family, member 22241030764241110236Rat
11512472LOC10835014240S ribosomal protein S10 pseudogene2241040365241053418Rat
1305826Dnajb4DnaJ heat shock protein family (Hsp40) member B42241129346241159272Rat
1591892Fubp1far upstream element binding protein 12241159481241186591Rat
708354Nexnnexilin (F actin binding protein)2241186783241218315Rat
40932417Tmem256-ps2transmembrane protein 256, pseudogene 22241195708241196382Rat
1559958Miga1mitoguardin 12241224118241279174Rat
41007032LOC120100974uncharacterized LOC1201009742241259660241260539Rat
1307848Usp33ubiquitin specific peptidase 332241283209241328479Rat
1565468Zzz3zinc finger, ZZ-type containing 32241330366241397308Rat
1590818Ak5adenylate kinase 52241397297241581483Rat
41050352LOC120100975uncharacterized LOC1201009752241435935241438090Rat
41112293LOC120100977uncharacterized LOC1201009772241610837241615471Rat
1306753Pigkphosphatidylinositol glycan anchor biosynthesis, class K2241630021241715493Rat
1564252St6galnac5ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 52241741933241911214Rat
3677St6galnac3ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 32242129755242645120Rat
41366662LOC120101318small nucleolar RNA SNORA172242630407242630539Rat
9399543LOC103691740uncharacterized LOC1036917402242660015242661299Rat
41181943LOC120101305small nucleolar RNA SNORA172242762713242762840Rat
1586533Asb17ankyrin repeat and SOCS box-containing 172242775887242786950Rat
1309190Msh4mutS homolog 42242785392242844609Rat
41325847LOC120101327small nucleolar RNA SNORA172242801939242802065Rat
3530RabggtbRab geranylgeranyltransferase subunit beta2242844758242850951Rat
40960960Snord45bsmall nucleolar RNA, C/D box 45B2242848622242848692Rat
41349006Snord45asmall nucleolar RNA, C/D box 45A2242849608242849688Rat
41213597Snord45csmall nucleolar RNA, C/D box 45C2242850124242850203Rat
2012Acadmacyl-CoA dehydrogenase medium chain2242858865242883036Rat
41382749LOC120101239small nucleolar RNA SNORA152242878456242878586Rat
1564620Slc44a5solute carrier family 44, member 52242911050243208018Rat
1308749Lhx8LIM homeobox 82243244958243269624Rat
41300494LOC120100978uncharacterized LOC1201009782243269842243273899Rat
41315350Rnu7-151RNA, U7 small nuclear 1512243301216243301272Rat
1590819Rpl13-ps20ribosomal protein L13, pseudogene 202243356863243357454Rat
41231495Vdac1-ps14voltage-dependent anion channel 1, pseudogene 142243473483243477418Rat
1559623Tyw3tRNA-yW synthesizing protein 3 homolog2243529912243552043Rat
1311639Cryzcrystallin zeta2243552037243580369Rat
11502150LOC10835016040S ribosomal protein S7 pseudogene2243559787243562735Rat
41274588LOC120100979uncharacterized LOC1201009792243595931243607433Rat
1593279Erich3glutamate-rich 32243615777243717973Rat
7727010LOC102555516uncharacterized LOC1025555162243649394243665399Rat
11366941LOC108350146transmembrane protein 14C pseudogene2243653655243658593Rat
41093625Ywhaq-ps3tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 32243734265243736074Rat
727908Tnni3kTNNI3 interacting kinase2243737346244005319Rat
7683241Lrrc53leucine rich repeat containing 532243781445243807037Rat
735121Fpgtfucose-1-phosphate guanylyltransferase2244099031244119967Rat
1591943Lrriq3leucine-rich repeats and IQ motif containing 32244119975244214590Rat
2320109Rpl32-ps7ribosomal protein L32, pseudogene 72244270448244271052Rat
41075016LOC120100982uncharacterized LOC1201009822245233503245267785Rat
708416Negr1neuronal growth regulator 12245624460246359605Rat
41370660LOC120101315small nucleolar RNA SNORA172246252385246252512Rat
61854Zranb2zinc finger RANBP2-type containing 22246573110246586942Rat
2325558Mir186microRNA 1862246582806246582891Rat
3435Ptger3prostaglandin E receptor 32246606131246750970Rat
41394165Vdac3-ps1voltage-dependent anion channel 3, pseudogene 12246631510246632409Rat
1564920Hnrnpa1-ps38heterogeneous nuclear ribonucleoprotein A1, pseudogene 382246756380246757470Rat
1590824Set-ps12Set nuclear proto-oncogene, pseudogene 122246862927246863842Rat
40932671LOC120100624protein transport protein Sec61 subunit gamma-like2246890088246890402Rat
41390013LOC120100983uncharacterized LOC1201009832246922222246928119Rat
2443Cthcystathionine gamma-lyase2246975888247002234Rat
1595074Ankrd13cankyrin repeat domain 13C2247023040247070433Rat
11372203Rpl36a-ps19ribosomal protein L36A, pseudogene 192247031466247032903Rat
1559953Srsf11serine and arginine rich splicing factor 112247074623247101460Rat
1562017Lrrc40leucine rich repeat containing 402247101518247131061Rat
708527Lrrc7leucine rich repeat containing 72247146616247634945Rat
41308751Trnaa-agc26transfer RNA alanine (anticodon AGC) 262247241437247241509Rat
41057256LOC120101167U6 spliceosomal RNA2247990725247990831Rat
7500603LOC102550475uncharacterized LOC1025504752248215070248251159Rat
41293749LOC120101263small nucleolar RNA SNORA482248341543248341685Rat
41248572LOC120101294small nucleolar RNA SNORA172248498585248498716Rat
41117277LOC120101196U6 spliceosomal RNA2248573434248573534Rat
1591100Vdac1-ps5voltage-dependent anion channel 1, pseudogene 52248593518248594926Rat
41181682Pgam5-ps1PGAM family member 5, mitochondrial serine/threonine protein phosphatase, pseudogene 12248628455248635482Rat
11494183LOC108350149uncharacterized LOC1083501492248643532248659512Rat
1306987Depdc1DEP domain containing 12248684508248717951Rat
621396Rpe65retinoid isomerohydrolase RPE652248766497248798403Rat
7709785LOC102556878uncharacterized LOC1025568782248822026248892610Rat
11375713Trnai-aau1transfer RNA isoleucine (anticodon AAU) 12248922273248922346Rat
735139WlsWnt ligand secretion mediator2248931885249047248Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34401D2Mgh221102237938229237938339Ratregion
34505D2Mgh161382240841095240841241Ratregion
34525D2Mgh181422243279173243279306Ratregion
11478D2Mgh131342235500980235501121Ratregion
36159D2Rat831292238443418238443538Ratregion
36241D2Rat721472247136021247136170Ratregion
37552D2Rat1851712229059610229059787Ratregion
35340D2Rat701712245889653245889826Ratregion
37796D2Rat1032352231871034231871243Ratregion
36574D2Rat681772235328134235328311Ratregion
36705D2Rat1511252231745742231745867Ratregion
34864D2Rat671712234244455234244620Ratregion
35100D2Rat851592232448220232448379Ratregion
35755D2Rat661822232634286232634457Ratregion
39892D2Rat2631242239452335239452461Ratregion
38418D2Rat1062482241180224241180458Ratregion
38460D2Rat1072342248498789248499013Ratregion
38524D2Rat1681052244101109244101256Ratregion
38554D2Rat1122042232374126232374340Ratregion
39526D2Rat2962002230469531230469773Ratregion
41470D2Rat2501632240579972240580154Ratregion
42629D2Rat2952182230963738230963986Ratregion
42631D2Rat3662082242450738242450940Ratregion
42633D2Rat3672082246974238246974460Ratregion
43309D2Got1681882233624675233624865Ratregion
43606D2Got1632132233098929233099142Ratregion
43608D2Got1772762241791857241792133Ratregion
60317D2Got2001502237431821237431971Ratregion
60318D2Got2012072238862804238863011Ratregion
60296D2Got1582222231473370231473592Ratregion
60299D2Got1612242230784226230784458Ratregion
60301D2Got1651972233226815233227012Ratregion
60302D2Got1662762234670004234670280Ratregion
60304D2Got1691342238147620238147754Ratregion
60306D2Got1721802237787974237788154Ratregion
60307D2Got1731382237776484237776622Ratregion
60308D2Got1741482236868236236868384Ratregion
60309D2Got175932237972097237972190Ratregion
60310D2Got1761762237431784237431960Ratregion
60311D2Got1781542245307252245307407Ratregion
60235D1Got2691882246970785246970973Ratregion
62467D2Uia101762243343125243343297Ratregion
67316D2Arb272232239568744239568967Ratregion
67796D2Uwm122712244639969244640239Ratregion
1630991D2Got3721112236901902236902013Ratregion
1631285D2Got4092812241791874241792155Ratregion
1628067D2Got3691552240561693240561848Ratregion
1639207D2Got4202732245650141245650414Ratregion
1633215D1Got4121792243324825243325004Ratregion
1640043D2Got4211582240483751240483902Ratregion
1637451D2Got3631502243780563243780713Ratregion
1637996D2Got4051382235168279235168417Ratregion
1638317D2Got3931262246229994246230118Ratregion
1633772D2Got413992237282013237282107Ratregion
7205980MARC_8975-8976:1025019065:38272230560856230561683Ratregion
7364909rs6637706202239562817239562817Ratregion
7206424stm516tctg.2-5B02238452237238453115Ratregion
5038618BE1991611002233996311233996411Ratregion
5038786RH1273322162233753013233753229Ratregion
5038792RH1273352052233674367233674572Ratregion
5038798RH1273381812249042476249042657Ratregion
5036605AU0485752452233464376233464619Ratregion
5036739AU0490491482238215116238215264Ratregion
5036785AU0491961272243322212243322339Ratregion
5036885AU0495122532231483912231484165Ratregion
5037049WI-188271222247075352247075474Ratregion
5035524UOX1062235501372235501478Ratregion
5035562ACADM1882242861648242861836Ratregion
5035659D5S19813222236556220236556542Ratregion
5033999RH1409791902249043273249043463Ratregion
5028659RH1258822512241328193241328444Ratregion
5031462AU0482441272235544197235544324Ratregion
5034055RH1411921982235372609235372807Ratregion
5034169RH1416312112235330075235330286Ratregion
5028777RH1422911772242859103242859280Ratregion
5031682AU0475011042237282007237282111Ratregion
5026318RH1317512112233826314233826525Ratregion
5031752AU0472691862235224639235224825Ratregion
5032645RH1347701922241224199241224391Ratregion
5027259AF0601781472233510084233510231Ratregion
5027261AI5056521462247068761247068907Ratregion
5032731RH1350931862241397424241397610Ratregion
5027573SHGC-1520703152246544811246545126Ratregion
5030069BI2920691742231468124231468298Ratregion
5030129BI2929911672232513351232513518Ratregion
5024980BB448270862231794764231794850Ratregion
5025258RH1276222052240706118240706323Ratregion
5030533BF4039701562243274106243274262Ratregion
5033335RH1384571302234569450234569580Ratregion
5025336RH1279262112242129804242130015Ratregion
8693416rs134484922241305619241305619Ratregion
5030641BE1139111722235349163235349335Ratregion
5028093X614341642235639593235639757Ratregion
5028232D3Mit2201482242927722242927870Ratregion
5030779AW5352591642235326426235326590Ratregion
5025750RH1295172092246586599246586808Ratregion
5028238D3Mit851572234862727234862884Ratregion
5025880RH1300531592234850298234850457Ratregion
5028426AI3856171382230541685230541823Ratregion
5051360AV2669431062235349286235349392Ratregion
505217109.mHAa3d9.seq1572246655483246655640Ratregion
5055939RH1440902102234520431234520641Ratregion
5056363RH1443351082241738846241738954Ratregion
5059454AI0598341282240734868240734996Ratregion
5059522AW5246681602247130491247130651Ratregion
5057986BF3864082172237938812237939029Ratregion
5056461RH1443922552247129997247130252Ratregion
505220127.MMHAP28FLA6.seq1582244929070244929228Ratregion
505222147.MMHAP35FRH11.seq1662245624799245624965Ratregion
5058128BF3866571502238393179238393329Ratregion
5056789RH1445811552230965009230965164Ratregion
5059760BE1031711532242598692242598845Ratregion
5059776BE0978371532241325402241325555Ratregion
5055587RH1438872032234527204234527407Ratregion
5058256BI2778582052234859076234859281Ratregion
5052377Z231431522230541635230541787Ratregion
5058488BI2904871902231827639231827829Ratregion
5050408RH1340392092231793678231793887Ratregion
5053525RH1426991432242917086242917230Ratregion
5059272BF3879132202235834375235834595Ratregion
5049896RH1337441872234562666234562851Ratregion
5054119RH1430412352247091682247091917Ratregion
5051358AI3250511272234562562234562689Ratregion
5054241RH1431111542241910370241910524Ratregion
5054279RH1431331202241361478241361598Ratregion
5054725RH1433891202233999648233999768Ratregion
5044078RH1303971942241186236241186430Ratregion
5044874RH1308532152240213391240213606Ratregion
5044890RH1308621892241396999241397188Ratregion
5045486RH1312061972243579419243579616Ratregion
5041514RH1289002122233756927233757139Ratregion
5045996RH1314991802232084697232084877Ratregion
5041750RH1290371902231019248231019438Ratregion
5048736RH1330751882235330555235330743Ratregion
5048764RH1330922062241329511241329719Ratregion
5046318RH1316831812249047008249047189Ratregion
5045518RH1312241612240731246240731407Ratregion
5046518RH1317992042235888744235888947Ratregion
5046078RH1315452142235193090235193304Ratregion
5047728RH1324941952245541954245542149Ratregion
5048878RH1331581952242879862242880059Ratregion
5048936RH1331911532230734261230734414Ratregion
5045722RH1313411822246649232246649414Ratregion
5046244RH1316411812249043716249043897Ratregion
5049002RH1332291812234507084234507265Ratregion
5047916RH1326032012235403613235403814Ratregion
5046832RH1319801692248717766248717936Ratregion
5046886RH1320111802242480607242480787Ratregion
5046926RH1320342052230952411230952616Ratregion
8663448rs639997392231019630231019630Ratregion
5039612RH1278061982240730965240731163Ratregion
5047354RH1322791972230965526230965723Ratregion
5048520RH1329501922243578997243579189Ratregion
5049534RH1335361842241272746241272930Ratregion
5039760RH1278912202237890162237890382Ratregion
5039832RH1279322162242844856242845073Ratregion
5043460RH1300381542244111220244111374Ratregion
5041344RH1288031922243737357243737549Ratregion
5075630RH1387052312247146500247146731Ratregion
5074188RH1378721442233509378233509522Ratregion
5074254RH1379102502231074716231074966Ratregion
5076150RH1390081292234271898234272027Ratregion
5072544RH1369111522234859825234859977Ratregion
5072590RH1369371892235522789235522978Ratregion
5074630RH1381271382245935228245935366Ratregion
5076622RH1392832422235640477235640719Ratregion
5075326RH1385301612237728291237728452Ratregion
5076002RH1389202182247023160247023378Ratregion
5076106RH1389821692244111959244112128Ratregion
5075084RH1383891282242874262242874390Ratregion
5077908RH1400292022234798808234799010Ratregion
5076482RH1392011692246359135246359304Ratregion
5078770RH1405421732231747212231747385Ratregion
5079984RH1413152162241715185241715401Ratregion
5073166RH1372781802243717727243717907Ratregion
5071028RH1348451912235102484235102675Ratregion
5071278RH1349901852235471116235471301Ratregion
5071702RH1352351852233510296233510481Ratregion
5072072RH1354492192249042999249043218Ratregion
5074868RH1382651582230533052230533210Ratregion
5066834AU0481232592245728032245728291Ratregion
5066914AU0480752762238646918238647189Ratregion
5066998AU0480261992243912810243913009Ratregion
5067502AU0477062692244412396244412665Ratregion
8693332rs657856262236660713236660713Ratregion
5068018AU0473982262232001765232001798Ratregion
5068470AU0471261802235224645235224825Ratregion
5068608AU0470431152237604546237604661Ratregion
5068232AU0472702402235224585235224825Ratregion
5070117RH944821612240734337240734498Ratregion
5070350AI5073821162231795904231796020Ratregion
5060118BF3885121652234524157234524322Ratregion
5060294AW5311571622241716753241716915Ratregion
5060670BE0988371802235375960235376140Ratregion
5062410BF4032111092241402707241402816Ratregion
5060922BI2869711792243700536243700715Ratregion
5061016BF3897141292231779971231780100Ratregion
5062522BF4033561042235345227235345331Ratregion
5065786BE1098652082246684059246684267Ratregion
5063736BF4049231102240357127240357237Ratregion
5065232AA9968312152231795477231795692Ratregion
5065412AI5023401812244117738244117919Ratregion
5065496BE1091071542234469227234469381Ratregion
5060694BE0989121582249048075249048233Ratregion
5064496BE1146771012243529983243530084Ratregion
5063296BI3016861622245562438245562600Ratregion
5064832AA9239282042231348293231348492Ratregion
5064840BF3998141922242629800242629992Ratregion
5064888BF4118091292235294014235294143Ratregion
5064892BF4118101232233490991233491114Ratregion
5066490AU0483251422244936247244936389Ratregion
5084102AI4083862292234930561234930790Ratregion
5086951AI0084541552233995619233995774Ratregion
5082141BF4099131692241742940241743109Ratregion
5082291BE1191111802235329540235329720Ratregion
5086274BE1054731982243273706243273904Ratregion
5086514BQ2056811752241130437241130612Ratregion
5082747BF3900181402236870556236870696Ratregion
5082951BF3904701502242519346242519496Ratregion
5083285BF417257932235702694235702787Ratregion
5088229AU0484431522240964511240964663Ratregion
5088313AU0484951762236562580236562758Ratregion
5089491AU0491872862243217822243218108Ratregion
5084086AI2332681192243048426243048545Ratregion
5084172AA799423962241186902241186998Ratregion
5084520AA8505611072240731878240731985Ratregion
5084630AI1699891652235503586235504335Ratregion
5084638AA852022922234873011234873103Ratregion
5084404AI100898902235543027235543117Ratregion
5084826AI178777932235354528235354621Ratregion
5085002AI1719911732231257295231257468Ratregion
5082381BI2746231402240626113240626253Ratregion
5090421AU0497401432230203710230203853Ratregion
5081220RH1420341822234523039234523221Ratregion
5086072AW5287481662231791898231792062Ratregion
5080876RH1418342202241030785241031005Ratregion
5084466AI0137351402235043282235043422Ratregion
5084838AI2371941852240456851240457036Ratregion
5084916AI236710922241328266241328358Ratregion
5083499BE1002891642243807263243807427Ratregion
5085956BF3875991502245535365245535515Ratregion
5503208ha203011982236168576236169774Ratregion
5505320Unc5c4232230534393230534816Ratregion
5507187UniSTS:2250951042247074673247074777Ratregion
5499581A62227834FB7302241184233241185481Ratregion
5499581A62227834FB7302241184233241185515Ratregion
5500565RH1360132392246586331246586570Ratregion
5499823UniSTS:2348482392241183678241183917Ratregion
5500288D21S195202243300928243301355Ratregion
5503001Prkacb802235655423235656709Ratregion
5500671RH1366051642231785304231785468Ratregion
5503370RW22082229872928229873136Ratregion
5501059PMC133668P24022235149301235149703Ratregion
5501810MARC_13861-13862:1007063395:13832237696303237696686Ratregion
5502723FUBP11562241182320241182476Ratregion
5502397RH1247261022241393635241393737Ratregion
Position Markers

Flank 1: (D2Rat185)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22229,059,610 - 229,059,787 (+)MAPPER
Rnor_6.02245,893,572 - 245,893,748NCBI
Rnor_5.02264,423,632 - 264,423,808UniSTS
RGSC_v3.42238,139,978 - 238,140,155RGD
RGSC_v3.42238,139,979 - 238,140,155UniSTS
RGSC_v3.12238,126,718 - 238,126,895RGD
Celera2221,149,549 - 221,149,731UniSTS
SHRSP x BN Map297.6898RGD
SHRSP x BN Map297.6898UniSTS
Flank 2: (D2Rat241)
Rat AssemblyChrPosition (strand)Source
Rnor_5.02242,993,235 - 242,993,417UniSTS
RGSC_v3.42217,985,399 - 217,985,582RGD
RGSC_v3.42217,985,400 - 217,985,582UniSTS
RGSC_v3.12217,948,461 - 217,948,644RGD
Celera2201,894,232 - 201,894,414UniSTS
SHRSP x BN Map283.0098UniSTS
SHRSP x BN Map283.0098RGD
Cytogenetic Map2 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Hcuc3

RGD Curation Notes
Note Type Note Reference