FUBP1 (far upstream element binding protein 1) - Rat Genome Database

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Gene: FUBP1 (far upstream element binding protein 1) Pan paniscus
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Symbol: FUBP1
Name: far upstream element binding protein 1
RGD ID: 11923678
Description: ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); developmental cell growth (ortholog); hematopoietic stem cell proliferation (ortholog); ASSOCIATED WITH Brain Injuries, Traumatic (ortholog); breast ductal carcinoma (ortholog); sciatic neuropathy (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: far upstream element-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,244,892 - 79,280,448 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0177,162,675 - 77,198,486 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)
synapse  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
FUBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,244,892 - 79,280,448 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0177,162,675 - 77,198,486 (-)NCBIMhudiblu_PPA_v0panPan3
FUBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,944,055 - 77,979,110 (-)EnsemblGRCh38hg38GRCh38
GRCh38177,944,055 - 77,979,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37178,409,740 - 78,444,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,186,179 - 78,217,365 (-)NCBINCBI36hg18NCBI36
Build 34178,126,110 - 78,156,735NCBI
Celera176,652,669 - 76,683,855 (-)NCBI
Cytogenetic Map1p31.1NCBI
HuRef176,545,210 - 76,576,401 (-)NCBIHuRef
CHM1_1178,529,931 - 78,561,136 (-)NCBICHM1_1
Fubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,916,059 - 151,942,467 (+)NCBIGRCm39mm39
GRCm39 Ensembl3151,916,059 - 151,942,463 (+)Ensembl
GRCm383152,210,422 - 152,236,830 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,210,422 - 152,236,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv373151,873,422 - 151,899,794 (+)NCBIGRCm37mm9NCBIm37
MGSCv363152,147,907 - 152,174,212 (+)NCBImm8
Celera3158,688,293 - 158,714,689 (+)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.05NCBI
Fubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22241,159,481 - 241,186,591 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)Ensembl
Rnor_6.02257,425,676 - 257,452,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,102,238 - 276,129,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,749,095 - 250,777,521 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2233,094,240 - 233,117,161 (+)NCBICelera
Cytogenetic Map2q45NCBI
Fubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,245,610 - 15,278,628 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,245,645 - 15,278,628 (+)NCBIChiLan1.0ChiLan1.0
FUBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,923,215 - 68,963,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,580,919 - 71,621,261 (+)NCBI
ROS_Cfam_1.0669,508,282 - 69,548,642 (+)NCBI
UMICH_Zoey_3.1669,015,218 - 69,054,818 (+)NCBI
UNSW_CanFamBas_1.0668,959,769 - 69,000,118 (+)NCBI
UU_Cfam_GSD_1.0669,446,187 - 69,486,514 (+)NCBI
Fubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,218,777 - 89,250,519 (-)NCBI
SpeTri2.0NW_0049365714,729,135 - 4,760,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,281,521 - 135,318,714 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,281,474 - 135,319,055 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,463,226 - 125,500,521 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1chlSab2
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1chlSab2
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1chlSab2
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,194,743 - 55,230,277 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603362,279,926 - 62,320,345 (-)NCBIVero_WHO_p1.0
Fubp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474219,279,544 - 19,313,139 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008959919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024927046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034928995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_008959919   ⟹   XP_008958167
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1179,244,892 - 79,280,093 (-)NCBI
Mhudiblu_PPA_v0177,162,675 - 77,198,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024927046   ⟹   XP_024782814
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1179,249,240 - 79,280,163 (-)NCBI
Mhudiblu_PPA_v0177,166,765 - 77,198,094 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034928939   ⟹   XP_034784830
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,102 (-)NCBI
RefSeq Acc Id: XM_034928944   ⟹   XP_034784835
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,486 (-)NCBI
RefSeq Acc Id: XM_034928956   ⟹   XP_034784847
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,101 (-)NCBI
RefSeq Acc Id: XM_034928963   ⟹   XP_034784854
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,167,026 - 77,198,167 (-)NCBI
RefSeq Acc Id: XM_034928970   ⟹   XP_034784861
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,166,765 - 77,198,097 (-)NCBI
RefSeq Acc Id: XM_034928976   ⟹   XP_034784867
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,101 (-)NCBI
RefSeq Acc Id: XM_034928983   ⟹   XP_034784874
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,098 (-)NCBI
RefSeq Acc Id: XM_034928992   ⟹   XP_034784883
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,097 (-)NCBI
RefSeq Acc Id: XM_034928995   ⟹   XP_034784886
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,166,765 - 77,198,093 (-)NCBI
RefSeq Acc Id: XR_004664316
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,102 (-)NCBI
RefSeq Acc Id: XR_004664317
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,102 (-)NCBI
RefSeq Acc Id: XR_004664318
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,102 (-)NCBI
RefSeq Acc Id: XR_004664323
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,101 (-)NCBI
RefSeq Acc Id: XR_004664325
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,098 (-)NCBI
RefSeq Acc Id: XR_004664328
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,097 (-)NCBI
RefSeq Acc Id: XR_004664329
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0177,162,675 - 77,198,097 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008958167   ⟸   XM_008959919
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_024782814   ⟸   XM_024927046
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_034784835   ⟸   XM_034928944
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034784830   ⟸   XM_034928939
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034784847   ⟸   XM_034928956
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034784867   ⟸   XM_034928976
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034784874   ⟸   XM_034928983
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034784883   ⟸   XM_034928992
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034784861   ⟸   XM_034928970
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034784886   ⟸   XM_034928995
- Peptide Label: isoform X9
RefSeq Acc Id: XP_034784854   ⟸   XM_034928963
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038243 ENTREZGENE
Ensembl Protein ENSPPAP00000030791 ENTREZGENE
NCBI Gene FUBP1 ENTREZGENE