Epfw6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Epfw6 (Epididymal fat weight QTL 6) Rattus norvegicus

Symbol: Epfw6
Name: Epididymal fat weight QTL 6
RGD ID: 9587428
Previously known as: percentage of epididymal fat
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 7.47
P Value: 0.001
Variance: 4.9
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22223,389,739 - 249,053,267RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02240,679,103 - 266,435,125RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02259,350,386 - 285,068,071RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42232,433,276 - 258,207,540RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D2Rat70)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22245,889,653 - 245,889,826 (+)MAPPER
Rnor_6.02263,179,018 - 263,179,188NCBI
Rnor_5.02281,850,301 - 281,850,471UniSTS
RGSC_v3.42254,933,192 - 254,933,362UniSTS
RGSC_v3.42254,933,191 - 254,933,362RGD
RGSC_v3.12254,947,787 - 254,948,141RGD
Celera2237,707,980 - 237,708,150UniSTS
RH 3.4 Map21633.1RGD
RH 3.4 Map21633.1UniSTS
RH 2.0 Map21203.5RGD
SHRSP x BN Map2112.4798RGD
FHH x ACI Map2113.0199RGD
Cytogenetic Map2q45UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general confidence interval 192.6-255.0 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken; epididymal fat was removed and weighed and percentage was calculated 8694157
qtl_general software package used: MultiQTL software 8694157