Epfw6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Epfw6 (Epididymal fat weight QTL 6) Rattus norvegicus

Symbol: Epfw6
Name: Epididymal fat weight QTL 6
RGD ID: 9587428
Previously known as: percentage of epididymal fat
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 7.47
P Value: 0.001
Variance: 4.9
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22223,389,739 - 249,053,267RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02240,679,103 - 266,435,125RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02259,350,386 - 285,068,071RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42232,433,276 - 258,207,540RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6Ratabdominal obesity-metabolic syndrome  IAGP 8694157 RGD 
Epfw6RatWeight Gain  IAGP 8694157 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6Ratincreased body weight  IDA 8694157 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6Ratepididymal fat pad weight to body weight ratio  IDA 8694157 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6Ratcontrol condition  IDA 8694157 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6Ratdigital column scale  IDA 8694157 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6RatF344/IcoCrlf  IEA 8694157 RGD 
Epfw6RatLOU/NimrOlaHsd  IEA 8694157 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw6Ratepididymal fat pad mass  IDA 8694157 RGD 


#
Reference Title
Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.


1 to 20 of 249 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41360797LOC12010062140S ribosomal protein S26-like2223598382223598776Rat
1589432Myl12a-ps1myosin light chain 12A, pseudogene 12223610495223611007Rat
1307115Cenpecentromere protein E2223637035223695692Rat
1309898Bdh23-hydroxybutyrate dehydrogenase 22223702410223723076Rat
1598112Slc9b2solute carrier family 9 member B22223726982223761234Rat
1305087Slc9b1solute carrier family 9 member B12223769105223818359Rat
41037515LOC120101362small nucleolar RNA SNORA262223824846223824966Rat
1566242Cisd2CDGSH iron sulfur domain 22223828937223853768Rat
619912Ube2d3ubiquitin-conjugating enzyme E2D 32223868397223899606Rat
1305785Manbamannosidase beta2223910432224002988Rat
40993262LOC120101140U6 spliceosomal RNA2224015573224015679Rat
70498Nfkb1nuclear factor kappa B subunit 12224016214224132135Rat
41144425Rnu2-72RNA, U2 small nuclear 722224145615224145716Rat
1308236Slc39a8solute carrier family 39 member 82224171787224319326Rat
11462118LOC10835011660S ribosomal protein L7 pseudogene2224181434224222483Rat
1564639Bank1B-cell scaffold protein with ankyrin repeats 12224530475224800420Rat
9294131Rpl29l8ribosomal protein L29 like 82224815128224815436Rat
3382Ppp3caprotein phosphatase 3 catalytic subunit alpha2225165981225440978Rat
1588169Pacsin3-ps1protein kinase C and casein kinase substrate in neurons 3, pseudogene 12225474055225475975Rat
40939843LOC120100622uncharacterized LOC1201006222225885497225888436Rat

1 to 20 of 249 rows
1 to 20 of 349 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
34401D2Mgh221102237938229237938339Ratregion
34505D2Mgh161442240841095240841241Ratregion
34525D2Mgh181332243279173243279306Ratregion
11478D2Mgh131412235500980235501121Ratregion
36081D2Rat2941612227146480227146641Ratregion
36159D2Rat831202238443418238443538Ratregion
36241D2Rat721492247136021247136170Ratregion
37552D2Rat1851772229059610229059787Ratregion
35340D2Rat701712245889653245889826Ratregion
37796D2Rat1032092231871034231871243Ratregion
36574D2Rat681772235328134235328311Ratregion
36705D2Rat1511252231745742231745867Ratregion
34785D2Rat651622226102309226102471Ratregion
34864D2Rat671652234244455234244620Ratregion
34906D2Rat2461282227573870227573998Ratregion
35100D2Rat851592232448220232448379Ratregion
35755D2Rat661822232634286232634457Ratregion
39892D2Rat2631242239452335239452461Ratregion
40540D2Rat2491392226814878226815018Ratregion
38418D2Rat1062342241180224241180458Ratregion
1 to 20 of 349 rows

Peak: (D2Rat70)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22245,889,653 - 245,889,826 (+)MAPPER
Rnor_6.02263,179,018 - 263,179,188NCBI
Rnor_5.02281,850,301 - 281,850,471UniSTS
RGSC_v3.42254,933,192 - 254,933,362UniSTS
RGSC_v3.42254,933,191 - 254,933,362RGD
RGSC_v3.12254,947,787 - 254,948,141RGD
Celera2237,707,980 - 237,708,150UniSTS
RH 3.4 Map21633.1RGD
RH 3.4 Map21633.1UniSTS
RH 2.0 Map21203.5RGD
SHRSP x BN Map2112.4798RGD
FHH x ACI Map2113.0199RGD
Cytogenetic Map2q45UniSTS


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat

1 to 10 of 39 rows


Note Type Note Reference
qtl_general confidence interval 192.6-255.0 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken; epididymal fat was removed and weighed and percentage was calculated 8694157
qtl_general software package used: MultiQTL software 8694157