Epfw6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Epfw6 (Epididymal fat weight QTL 6) Rattus norvegicus

Symbol: Epfw6
Name: Epididymal fat weight QTL 6
RGD ID: 9587428
Previously known as: percentage of epididymal fat
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 7.47
P Value: 0.001
Variance: 4.9
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22223,389,739 - 249,053,267RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02240,679,103 - 266,435,125RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02259,350,386 - 285,068,071RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42232,433,276 - 258,207,540RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41360797LOC12010062140S ribosomal protein S26-like2223598382223598776Rat
1589432Myl12a-ps1myosin light chain 12A, pseudogene 12223610495223611007Rat
1307115Cenpecentromere protein E2223637035223695692Rat
1309898Bdh23-hydroxybutyrate dehydrogenase 22223702410223723076Rat
1598112Slc9b2solute carrier family 9 member B22223726982223761234Rat
1305087Slc9b1solute carrier family 9 member B12223769105223818359Rat
41037515LOC120101362small nucleolar RNA SNORA262223824846223824966Rat
1566242Cisd2CDGSH iron sulfur domain 22223828937223853768Rat
619912Ube2d3ubiquitin-conjugating enzyme E2D 32223868397223899606Rat
1305785Manbamannosidase beta2223910432224002988Rat
40993262LOC120101140U6 spliceosomal RNA2224015573224015679Rat
70498Nfkb1nuclear factor kappa B subunit 12224016214224132135Rat
41144425Rnu2-72RNA, U2 small nuclear 722224145615224145716Rat
1308236Slc39a8solute carrier family 39 member 82224171787224319326Rat
11462118LOC10835011660S ribosomal protein L7 pseudogene2224181434224222483Rat
1564639Bank1B-cell scaffold protein with ankyrin repeats 12224530475224800420Rat
9294131Rpl29l8ribosomal protein L29 like 82224815128224815436Rat
3382Ppp3caprotein phosphatase 3 catalytic subunit alpha2225165981225440978Rat
1588169Pacsin3-ps1protein kinase C and casein kinase substrate in neurons 3, pseudogene 12225474055225475975Rat
40939843LOC120100622uncharacterized LOC1201006222225885497225888436Rat
1303218Emcnendomucin2225891100225970932Rat
41011800LOC120100949uncharacterized LOC1201009492226057178226074795Rat
2322961Ddit4lDNA-damage-inducible transcript 4-like2226128273226131044Rat
11496584LOC108350121uncharacterized LOC1083501212226205496226207736Rat
11399629LOC108350122uncharacterized LOC1083501222226302496226318543Rat
7562111Rpl17-ps6ribosomal protein L17, pseudogene 62226326906226327481Rat
621464H2az1H2A.Z variant histone 12226355668226357984Rat
1591949Dnajb14DnaJ heat shock protein family (Hsp40) member B142226358988226409461Rat
1307133Lamtor3late endosomal/lysosomal adaptor, MAPK and MTOR activator 32226411389226423612Rat
1310189Dapp1dual adaptor of phosphotyrosine and 3-phosphoinositides 12226425890226475445Rat
41077741LOC120100950uncharacterized LOC1201009502226438865226442299Rat
41162421LOC120100951uncharacterized LOC1201009512226480844226485594Rat
1590827Nlk-ps1nemo like kinase, pseudogene 12226517676226519713Rat
1591948Mindy3-ps1MINDY lysine 48 deubiquitinase 3, pseudogene 12226521817226527142Rat
7750470LOC102555623uncharacterized LOC1025556232226558532226578601Rat
7695964C2h4orf54similar to human chromosome 4 open reading frame 542226580582226599354Rat
1308388Mttpmicrosomal triglyceride transfer protein2226613090226654239Rat
1594565Trmt10atRNA methyltransferase 10A2226669445226684166Rat
1309170C2h4orf17similar to human chromosome 4 open reading frame 172226693808226722277Rat
1584721Metap2-ps4methionyl aminopeptidase 2, pseudogene 42226738713226740586Rat
621638Adh7alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide2226748724226763183Rat
2044Adh1calcohol dehydrogenase 1C (class I), gamma polypeptide2226797303226808892Rat
1310029Adh6aalcohol dehydrogenase 6A (class V)2226823775226846005Rat
1595864Adh1-ps1alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 12226862836226881171Rat
11424141LOC108350123uncharacterized LOC1083501232226879275226881249Rat
1306313Adh6alcohol dehydrogenase 6 (class V)2226903208226934564Rat
71028Adh4alcohol dehydrogenase 4 (class II), pi polypeptide2226948717226966747Rat
2292706Adh5alcohol dehydrogenase 5 (class III), chi polypeptide2226975184226987591Rat
1305545Metap1methionyl aminopeptidase 12226991305227024360Rat
7699806LOC102556448uncharacterized LOC1025564482227046507227052126Rat
69647Eif4eeukaryotic translation initiation factor 4E2227066519227099261Rat
9685091Mir1956microRNA 19562227066526227066588Rat
7743957LOC102547266uncharacterized LOC1025472662227238591227271656Rat
1303176Tspan5tetraspanin 52227294180227469361Rat
1560590Hspa8-ps20heat shock protein family A (Hsp70) member 8, pseudogene 202227488250227490321Rat
1308558Rap1gds1Rap1 GTPase-GDP dissociation stimulator 12227500366227645213Rat
41024593LOC120100955uncharacterized LOC1201009552227530080227561990Rat
41206447Nme2-ps3NME/NM23 nucleoside diphosphate kinase 2, pseudogene 32227696512227697495Rat
41129485LOC120101272small nucleolar RNA SNORA482227718981227719125Rat
1591946Stpg2sperm-tail PG-rich repeat containing 22227764266228285664Rat
6496054Cycs-ps2cytochrome c, somatic, pseudogene 22228057525228059101Rat
41210344LOC120101136U6 spliceosomal RNA2228059072228059178Rat
41257633LOC120101162U6 spliceosomal RNA2228169721228169827Rat
1590825Rps10-ps14ribosomal protein S10, pseudogene 142228301082228301564Rat
41331959LOC120101220U7 small nuclear RNA2228491892228491955Rat
41253766LOC120101108U2 spliceosomal RNA2228566040228566192Rat
40946169Trnav-aac23transfer RNA valine (anticodon AAC) 232228767419228767489Rat
2321664Aspscr1-ps1ASPSCR1 tether for SLC2A4, UBX domain containing, pseudogene 12228792286228793721Rat
41096450LOC120100956uncharacterized LOC1201009562229528518229545145Rat
9089379LOC103691720uncharacterized LOC1036917202229741900229876749Rat
620095Pdha2pyruvate dehydrogenase E1 subunit alpha 22229872300229873848Rat
735109Unc5cunc-5 netrin receptor C2230180353230535219Rat
1595863Bmpr1bbone morphogenetic protein receptor type 1B2230538252230871077Rat
621076Pdlim5PDZ and LIM domain 52230952251231120329Rat
41040699Rpl39-ps9ribosomal protein L39, pseudogene 92231154550231158955Rat
1311040Gbp5guanylate binding protein 52231237748231257071Rat
1583235Gbp7guanylate binding protein 72231275521231297289Rat
1310579Gbp4guanylate binding protein 42231304910231318883Rat
621810Gbp2guanylate binding protein 22231332488231348573Rat
1311877Gbp1guanylate binding protein 12231398136231432773Rat
1597766Gbp3guanylate binding protein 32231460032231500266Rat
41121145LOC120101154U6 spliceosomal RNA2231513755231513861Rat
1560801Gbp1-ps1guanylate binding protein 1, pseudogene 12231517485231525865Rat
1584233Gbp6-ps2guanylate binding protein 6, pseudogene 22231643579231672818Rat
1359262Kyat3kynurenine aminotransferase 32231701881231747462Rat
11361756LOC108350125uncharacterized LOC1083501252231759164231767187Rat
619735Gtf2bgeneral transcription factor IIB2231767317231785626Rat
41219769Rnu6-503RNA, U6 small nuclear 5032231776535231776641Rat
620146Pkn2protein kinase N22231793584231898953Rat
7740925LOC102546591uncharacterized LOC1025465912231915170231944275Rat
41182245LOC120100957uncharacterized LOC1201009572231978621231987035Rat
11452044LOC108350126uncharacterized LOC1083501262232084651232087782Rat
41097702LOC120100959uncharacterized LOC1201009592232435038232454741Rat
41187575LOC120100958uncharacterized LOC1201009582232439706232462245Rat
7633711LOC102546938uncharacterized LOC1025469382232552428232604876Rat
41208624LOC120100960uncharacterized LOC1201009602233102614233153460Rat
41287178LOC120100961uncharacterized LOC1201009612233138097233143134Rat
1305670Lmo4LIM domain only 42233264180233280881Rat
11484619LOC108350128uncharacterized LOC1083501282233470949233477899Rat
7597955LOC102549483uncharacterized LOC1025494832233490907233505798Rat
1305366Hs2st1heparan sulfate 2-O-sulfotransferase 12233508018233641769Rat
621291Selenofselenoprotein F2233642075233674853Rat
41169203LOC120100962uncharacterized LOC1201009622233642432233645492Rat
40954943LOC120100963uncharacterized LOC1201009632233732380233740609Rat
1304859Sh3glb1SH3 domain -containing GRB2-like endophilin B12233750838233784817Rat
621100Clca5chloride channel accessory 52233796569233818867Rat
1591945Clca4lchloride channel calcium activated 4-like2233826133233846137Rat
7715322LOC102549543uncharacterized LOC1025495432233826602233865540Rat
1303234Clca4chloride channel accessory 42233883625233904993Rat
1306258Clca1chloride channel accessory 12233938677233964369Rat
1304894Clca2chloride channel accessory 22233993619234022691Rat
1593831Odf2louter dense fiber of sperm tails 2-like2234036049234072751Rat
1565539Col24a1collagen type XXIV alpha 1 chain2234212256234469445Rat
1308723Znhit6zinc finger, HIT-type containing 62234486686234517952Rat
41217598LOC120101145U6 spliceosomal RNA2234500049234500155Rat
620763Ccn1cellular communication network factor 12234562410234565370Rat
7709092LOC102553018uncharacterized LOC1025530182234565400234641070Rat
70968Ddah1dimethylarginine dimethylaminohydrolase 12234667499234800322Rat
40962343LOC120100964uncharacterized LOC1201009642234780480234783439Rat
620544Bcl10BCL10, immune signaling adaptor2234840880234850520Rat
1560065C2h1orf52similar to human chromosome 1 open reading frame 522234853378234860045Rat
41195544Rnu5e-5RNA, U5E small nuclear 52234864277234864392Rat
1564206Syde2synapse defective Rho GTPase homolog 22234897975234930994Rat
1563105Dnai3dynein axonemal intermediate chain 32234947910235006173Rat
1308420Mcoln3mucolipin TRP cation channel 32235008716235042885Rat
1308884Mcoln2mucolipin TRP cation channel 22235053816235102703Rat
620565Lpar3lysophosphatidic acid receptor 32235125234235193916Rat
41114961Rnu6-777RNA, U6 small nuclear 7772235281040235281138Rat
708490Ssx2ipSSX family member 2 interacting protein2235298012235330750Rat
621338Ctbschitobiase2235340520235355091Rat
1359500Spata1spermatogenesis associated 12235349126235394578Rat
620807Gng5G protein subunit gamma 52235394680235403177Rat
1559755Rpf1ribosome production factor 12235403020235417546Rat
70901Dnase2bdeoxyribonuclease 2 beta2235470915235515211Rat
621369Uoxurate oxidase2235486867235523053Rat
708544Samd13sterile alpha motif domain containing 132235534699235540527Rat
41364636LOC120100965uncharacterized LOC1201009652235540646235542542Rat
40988647LOC120100966uncharacterized LOC1201009662235554316235556702Rat
1310574Prkacbprotein kinase cAMP-activated catalytic subunit beta2235636878235726928Rat
1566117Ttll7tubulin tyrosine ligase like 72235765786235889047Rat
11471726LOC108350293uncharacterized LOC1083502932236209335236213311Rat
40936735LOC120100967uncharacterized LOC1201009672236345988236352811Rat
41063911LOC120100969uncharacterized LOC1201009692236842537236851959Rat
41330340LOC120100968uncharacterized LOC1201009682236847492236881086Rat
2320955Esd-ps1esterase D, pseudogene 12237054176237055006Rat
41340482LOC120101330small nucleolar RNA SNORA172237234034237234163Rat
620835Adgrl2adhesion G protein-coupled receptor L22237696055238327141Rat
41141506LOC120101103uncharacterized LOC1201011032237751769237771224Rat
7705196LOC102547720uncharacterized LOC1025477202237932068237940538Rat
7526141LOC102547649uncharacterized LOC1025476492238137914238161725Rat
41251367LOC120101209U6 spliceosomal RNA2238220051238220154Rat
41294353LOC120101101uncharacterized LOC1201011012238222160238235082Rat
7563133LOC102547779uncharacterized LOC1025477792238387843238393363Rat
7603781LOC102547949uncharacterized LOC1025479492238524961238644513Rat
40941651LOC120101360small nucleolar RNA SNORA172238885848238885934Rat
7566012LOC102548042uncharacterized LOC1025480422239209201239226143Rat
11376688LOC108350139uncharacterized LOC1083501392239342624239423222Rat
41361361LOC120100970uncharacterized LOC1201009702239423440239435136Rat
7508827LOC102548237uncharacterized LOC1025482372239641025239655905Rat
2265Calm2-ps1calmodulin 2, pseudogene 12239897888239899007Rat
9285423LOC103691735uncharacterized LOC1036917352240213258240214625Rat
621136Adgrl4adhesion G protein-coupled receptor L42240354909240457231Rat
7682235LOC102548445uncharacterized LOC1025484452240490785240503872Rat
1310523Ifi44interferon-induced protein 442240626058240643879Rat
1595861Ifi44linterferon-induced protein 44-like2240668742240706425Rat
3436Ptgfrprostaglandin F receptor2240731185240766674Rat
9349957LOC103691736proteasome maturation protein pseudogene2240786521240786947Rat
1585253Ptp4a1l2protein tyrosine phosphatase 4A1 like 22240806880240807884Rat
41037774LOC120101214U7 small nuclear RNA2240874055240874116Rat
11426388LOC10835029540S ribosomal protein S6 pseudogene2240913042240913845Rat
7588281LOC102548701uncharacterized LOC1025487012240942249240945720Rat
1560751Gipc2GIPC PDZ domain containing family, member 22241030764241110236Rat
11512472LOC10835014240S ribosomal protein S10 pseudogene2241040365241053418Rat
1305826Dnajb4DnaJ heat shock protein family (Hsp40) member B42241129346241159272Rat
1591892Fubp1far upstream element binding protein 12241159481241186591Rat
708354Nexnnexilin (F actin binding protein)2241186783241218315Rat
40932417Tmem256-ps2transmembrane protein 256, pseudogene 22241195708241196382Rat
1559958Miga1mitoguardin 12241224118241279174Rat
41007032LOC120100974uncharacterized LOC1201009742241259660241260539Rat
1307848Usp33ubiquitin specific peptidase 332241283209241328479Rat
1565468Zzz3zinc finger, ZZ-type containing 32241330366241397308Rat
1590818Ak5adenylate kinase 52241397297241581483Rat
41050352LOC120100975uncharacterized LOC1201009752241435935241438090Rat
41112293LOC120100977uncharacterized LOC1201009772241610837241615471Rat
1306753Pigkphosphatidylinositol glycan anchor biosynthesis, class K2241630021241715493Rat
1564252St6galnac5ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 52241741933241911214Rat
3677St6galnac3ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 32242129755242645120Rat
41366662LOC120101318small nucleolar RNA SNORA172242630407242630539Rat
9399543LOC103691740uncharacterized LOC1036917402242660015242661299Rat
41181943LOC120101305small nucleolar RNA SNORA172242762713242762840Rat
1586533Asb17ankyrin repeat and SOCS box-containing 172242775887242786950Rat
1309190Msh4mutS homolog 42242785392242844609Rat
41325847LOC120101327small nucleolar RNA SNORA172242801939242802065Rat
3530RabggtbRab geranylgeranyltransferase subunit beta2242844758242850951Rat
40960960Snord45bsmall nucleolar RNA, C/D box 45B2242848622242848692Rat
41349006Snord45asmall nucleolar RNA, C/D box 45A2242849608242849688Rat
41213597Snord45csmall nucleolar RNA, C/D box 45C2242850124242850203Rat
2012Acadmacyl-CoA dehydrogenase medium chain2242858865242883036Rat
41382749LOC120101239small nucleolar RNA SNORA152242878456242878586Rat
1564620Slc44a5solute carrier family 44, member 52242911050243208018Rat
1308749Lhx8LIM homeobox 82243244958243269624Rat
41300494LOC120100978uncharacterized LOC1201009782243269842243273899Rat
41315350Rnu7-151RNA, U7 small nuclear 1512243301216243301272Rat
1590819Rpl13-ps20ribosomal protein L13, pseudogene 202243356863243357454Rat
41231495Vdac1-ps14voltage-dependent anion channel 1, pseudogene 142243473483243477418Rat
1559623Tyw3tRNA-yW synthesizing protein 3 homolog2243529912243552043Rat
1311639Cryzcrystallin zeta2243552037243580369Rat
11502150LOC10835016040S ribosomal protein S7 pseudogene2243559787243562735Rat
41274588LOC120100979uncharacterized LOC1201009792243595931243607433Rat
1593279Erich3glutamate-rich 32243615777243717973Rat
7727010LOC102555516uncharacterized LOC1025555162243649394243665399Rat
11366941LOC108350146transmembrane protein 14C pseudogene2243653655243658593Rat
41093625Ywhaq-ps3tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 32243734265243736074Rat
727908Tnni3kTNNI3 interacting kinase2243737346244005319Rat
7683241Lrrc53leucine rich repeat containing 532243781445243807037Rat
735121Fpgtfucose-1-phosphate guanylyltransferase2244099031244119967Rat
1591943Lrriq3leucine-rich repeats and IQ motif containing 32244119975244214590Rat
2320109Rpl32-ps7ribosomal protein L32, pseudogene 72244270448244271052Rat
41075016LOC120100982uncharacterized LOC1201009822245233503245267785Rat
708416Negr1neuronal growth regulator 12245624460246359605Rat
41370660LOC120101315small nucleolar RNA SNORA172246252385246252512Rat
61854Zranb2zinc finger RANBP2-type containing 22246573110246586942Rat
2325558Mir186microRNA 1862246582806246582891Rat
3435Ptger3prostaglandin E receptor 32246606131246750970Rat
41394165Vdac3-ps1voltage-dependent anion channel 3, pseudogene 12246631510246632409Rat
1564920Hnrnpa1-ps38heterogeneous nuclear ribonucleoprotein A1, pseudogene 382246756380246757470Rat
1590824Set-ps12Set nuclear proto-oncogene, pseudogene 122246862927246863842Rat
40932671LOC120100624protein transport protein Sec61 subunit gamma-like2246890088246890402Rat
41390013LOC120100983uncharacterized LOC1201009832246922222246928119Rat
2443Cthcystathionine gamma-lyase2246975888247002234Rat
1595074Ankrd13cankyrin repeat domain 13C2247023040247070433Rat
11372203Rpl36a-ps19ribosomal protein L36A, pseudogene 192247031466247032903Rat
1559953Srsf11serine and arginine rich splicing factor 112247074623247101460Rat
1562017Lrrc40leucine rich repeat containing 402247101518247131061Rat
708527Lrrc7leucine rich repeat containing 72247146616247634945Rat
41308751Trnaa-agc26transfer RNA alanine (anticodon AGC) 262247241437247241509Rat
41057256LOC120101167U6 spliceosomal RNA2247990725247990831Rat
7500603LOC102550475uncharacterized LOC1025504752248215070248251159Rat
41293749LOC120101263small nucleolar RNA SNORA482248341543248341685Rat
41248572LOC120101294small nucleolar RNA SNORA172248498585248498716Rat
41117277LOC120101196U6 spliceosomal RNA2248573434248573534Rat
1591100Vdac1-ps5voltage-dependent anion channel 1, pseudogene 52248593518248594926Rat
41181682Pgam5-ps1PGAM family member 5, mitochondrial serine/threonine protein phosphatase, pseudogene 12248628455248635482Rat
11494183LOC108350149uncharacterized LOC1083501492248643532248659512Rat
1306987Depdc1DEP domain containing 12248684508248717951Rat
621396Rpe65retinoid isomerohydrolase RPE652248766497248798403Rat
7709785LOC102556878uncharacterized LOC1025568782248822026248892610Rat
11375713Trnai-aau1transfer RNA isoleucine (anticodon AAU) 12248922273248922346Rat
735139WlsWnt ligand secretion mediator2248931885249047248Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34401D2Mgh221102237938229237938339Ratregion
34505D2Mgh161382240841095240841241Ratregion
34525D2Mgh181422243279173243279306Ratregion
11478D2Mgh131342235500980235501121Ratregion
36081D2Rat2941472227146480227146641Ratregion
36159D2Rat831292238443418238443538Ratregion
36241D2Rat721472247136021247136170Ratregion
37552D2Rat1851712229059610229059787Ratregion
35340D2Rat701712245889653245889826Ratregion
37796D2Rat1032352231871034231871243Ratregion
36574D2Rat681772235328134235328311Ratregion
36705D2Rat1511252231745742231745867Ratregion
34785D2Rat651562226102309226102471Ratregion
34864D2Rat671712234244455234244620Ratregion
34906D2Rat2461252227573870227573998Ratregion
35100D2Rat851592232448220232448379Ratregion
35755D2Rat661822232634286232634457Ratregion
39892D2Rat2631242239452335239452461Ratregion
40540D2Rat2491522226814878226815018Ratregion
38418D2Rat1062482241180224241180458Ratregion
38460D2Rat1072342248498789248499013Ratregion
38524D2Rat1681052244101109244101256Ratregion
38554D2Rat1122042232374126232374340Ratregion
39118D2Rat1391382223490383223490532Ratregion
39240D2Rat922002226936119226936289Ratregion
39526D2Rat2962002230469531230469773Ratregion
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5085956BF3875991502245535365245535515Ratregion
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5504468PMC213488P11032224053636224053739Ratregion
5505320Unc5c4232230534393230534816Ratregion
5506751G451521442228769406228769552Ratregion
5507187UniSTS:2250951042247074673247074777Ratregion
5499581A62227834FB7302241184233241185481Ratregion
5499581A62227834FB7302241184233241185515Ratregion
5500565RH1360132392246586331246586570Ratregion
5499823UniSTS:2348482392241183678241183917Ratregion
5500288D21S195202243300928243301355Ratregion
5503001Prkacb802235655423235656709Ratregion
5500671RH1366051642231785304231785468Ratregion
5503370RW22082229872928229873136Ratregion
5501059PMC133668P24022235149301235149703Ratregion
5501810MARC_13861-13862:1007063395:13832237696303237696686Ratregion
5502092MARC_31601-31602:1045759847:13712226357039226357678Ratregion
5502707PPP3CA1112225380592225380703Ratregion
5502723FUBP11562241182320241182476Ratregion
5502397RH1247261022241393635241393737Ratregion
Position Markers

Peak: (D2Rat70)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22245,889,653 - 245,889,826 (+)MAPPER
Rnor_6.02263,179,018 - 263,179,188NCBI
Rnor_5.02281,850,301 - 281,850,471UniSTS
RGSC_v3.42254,933,192 - 254,933,362UniSTS
RGSC_v3.42254,933,191 - 254,933,362RGD
RGSC_v3.12254,947,787 - 254,948,141RGD
Celera2237,707,980 - 237,708,150UniSTS
RH 3.4 Map21633.1RGD
RH 3.4 Map21633.1UniSTS
RH 2.0 Map21203.5RGD
SHRSP x BN Map2112.4798RGD
FHH x ACI Map2113.0199RGD
Cytogenetic Map2q45UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general confidence interval 192.6-255.0 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken; epididymal fat was removed and weighed and percentage was calculated 8694157
qtl_general software package used: MultiQTL software 8694157