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Gene: Clca1 (chloride channel accessory 1) Rattus norvegicus
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Symbol: Clca1
Name: chloride channel accessory 1
Description: Predicted to have intracellular calcium activated chloride channel activity. Involved in cellular response to hypoxia. Localizes to the zymogen granule membrane. Human ortholog(s) of this gene implicated in asthma and chronic obstructive pulmonary disease. Orthologous to human CLCA1 (chloride channel accessory 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: calcium-activated chloride channel regulator 1; chloride channel calcium activated 3; Clca3; LOC308015
Orthologs:
Homo sapiens (human) : CLCA1 (chloride channel accessory 1)  HGNC  Alliance
Mus musculus (house mouse) : Clca1 (chloride channel accessory 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clca1 (chloride channel accessory 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLCA1 (chloride channel accessory 1)
Canis lupus familiaris (dog) : CLCA1 (chloride channel accessory 1)
Sus scrofa (pig) : CLCA1 (chloride channel accessory 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02250,897,980 - 250,923,711 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02269,425,672 - 269,451,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,057,135 - 243,084,146 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12243,043,871 - 243,070,886 (-)NCBI
Celera2225,927,785 - 225,953,924 (-)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Clca1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306258
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.