Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pdha2 | Rat | spermatogenic failure 70 | | ISO | PDHA2 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pdha2 | Rat | spermatogenic failure 70 | | ISO | PDHA2 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Isolation and characterisation of the mouse pyruvate dehydrogenase E1 alpha genes. | Fitzgerald J, etal., Biochim Biophys Acta 1992 May 7;1131(1):83-90. |
2. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
3. | KEGG: Kyoto Encyclopedia of Genes and Genomes | KEGG |
4. | Pretranslational regulation of pyruvate dehydrogenase complex subunits in white adipose tissue during the suckling-weaning transition in the rat. | Maury J, etal., Biochem J. 1995 Oct 15;311 ( Pt 2):531-5. |
5. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
6. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
7. | Regulation of mammalian pyruvate dehydrogenase complex by phosphorylation: complexity of multiple phosphorylation sites and kinases. | Patel MS and Korotchkina LG, Exp Mol Med. 2001 Dec 31;33(4):191-7. |
8. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
9. | GOA pipeline | RGD automated data pipeline |
10. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:7916643 | PMID:12477932 | PMID:15489334 | PMID:16436377 | PMID:18614015 | PMID:21630459 |
Pdha2 (Rattus norvegicus - Norway rat) |
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PDHA2 (Homo sapiens - human) |
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Pdha2 (Mus musculus - house mouse) |
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Pdha2 (Chinchilla lanigera - long-tailed chinchilla) |
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PDHA2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PDHA2 (Canis lupus familiaris - dog) |
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Pdha2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PDHA2 (Sus scrofa - pig) |
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PDHA2 (Chlorocebus sabaeus - green monkey) |
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Pdha2 (Heterocephalus glaber - naked mole-rat) |
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The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RW2 |
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appendage
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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4 | 8 | 6 | 7 | 3 | 5 | 3 | 16 | 8 | 6 | 2 | 41 | 4 |
RefSeq Transcripts | NM_053994 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | BC078757 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000021719 ⟹ ENSRNOP00000071767 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_053994 ⟹ NP_446446 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_446446 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH78757 | (Get FASTA) | NCBI Sequence Viewer |
EDL82338 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00055015815 | ||
ENSRNOP00060037638 | |||
ENSRNOP00065037352 | |||
GenBank Protein | Q06437 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_446446 ⟸ NM_053994 |
- Peptide Label: | precursor |
- UniProtKB: | Q06437 (UniProtKB/Swiss-Prot), A6HW52 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000071767 ⟸ ENSRNOT00000021719 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q06437-F1-model_v2 | AlphaFold | Q06437 | 1-391 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13691792 | ||||||||
Promoter ID: | EPDNEW_R2316 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Pdha2_1 | ||||||||
Description: | pyruvate dehydrogenase E1 alpha 2 subunit | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:620095 | AgrOrtholog |
BioCyc Gene | G2FUF-51004 | BioCyc |
Ensembl Genes | ENSRNOG00000016223 | Ensembl |
ENSRNOG00055011529 | UniProtKB/Swiss-Prot | |
ENSRNOG00060026187 | UniProtKB/Swiss-Prot | |
ENSRNOG00065026402 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00055019595 | UniProtKB/Swiss-Prot |
ENSRNOT00060045333 | UniProtKB/Swiss-Prot | |
ENSRNOT00065045553 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 3.40.50.970 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7113421 | IMAGE-MGC_LOAD |
InterPro | DH_E1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PDH_E1_Alpha_Subunit | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pyrv_DH_E1_asu_subgrp-y | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
THDP-binding | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:117098 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:93262 | IMAGE-MGC_LOAD |
NCBI Gene | 117098 | ENTREZGENE |
PANTHER | PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, TESTIS-SPECIFIC FORM, MITOCHONDRIAL | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | E1_dh | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Pdha2 | PhenoGen |
RatGTEx | ENSRNOG00000016223 | RatGTEx |
ENSRNOG00055011529 | RatGTEx | |
ENSRNOG00060026187 | RatGTEx | |
ENSRNOG00065026402 | RatGTEx | |
Superfamily-SCOP | SSF52518 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A6HW52 | ENTREZGENE, UniProtKB/TrEMBL |
ODPAT_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2019-12-06 | Pdha2 | pyruvate dehydrogenase E1 subunit alpha 2 | Pdha2 | pyruvate dehydrogenase E1 alpha 2 subunit | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2017-08-23 | Pdha2 | pyruvate dehydrogenase E1 alpha 2 subunit | Pdha2 | pyruvate dehydrogenase alpha 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2017-06-20 | Pdha2 | pyruvate dehydrogenase alpha 2 | Pdha2 | pyruvate dehydrogenase (lipoamide) alpha 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-08-29 | Pdha2 | pyruvate dehydrogenase (lipoamide) alpha 2 | Pdha2 | pyruvate dehydrogenase E1 alpha 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2015-06-08 | Pdha2 | pyruvate dehydrogenase E1 alpha 2 | Pdha2 | pyruvate dehydrogenase (lipoamide) alpha 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2009-02-26 | Pdha2 | pyruvate dehydrogenase (lipoamide) alpha 2 | Pdha2 | pyruvate dehydrogenase E1 alpha 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2004-12-03 | Pdha2 | pyruvate dehydrogenase E1 alpha 2 | Pdhal | pyruvate dehydrogenase E1 alpha-like | Symbol and Name updated | 1299863 | APPROVED |
2002-08-07 | Pdhal | pyruvate dehydrogenase E1 alpha-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL |