LOC120101140 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120101140 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120101140 (Ensembl: LOC120095498)
Name: U6 spliceosomal RNA
RGD ID: 40993262
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82226,689,104 - 226,689,210 (-)NCBIGRCr8
mRatBN7.22224,015,573 - 224,015,679 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,415,389 - 26,415,495 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl175,938,436 - 75,938,542 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2224,015,573 - 224,015,679 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX26,937,453 - 26,937,559 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl836,157,434 - 36,157,540 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl772,666,497 - 72,666,603 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl339,629,133 - 39,629,239 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1421,391,651 - 21,391,757 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1116,655,090 - 16,655,196 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl950,425,749 - 50,425,855 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl6104,314,104 - 104,314,210 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl282,944,492 - 82,944,598 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1745,438,594 - 45,438,700 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1596,681,691 - 96,681,797 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl69,344,990 - 9,345,096 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1815,518,520 - 15,518,626 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1085,918,001 - 85,918,107 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl283,782,193 - 83,782,299 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1630,667,601 - 30,667,707 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl434,210,184 - 34,210,290 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1573,008,673 - 73,008,779 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2228,059,072 - 228,059,178 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl557,985,035 - 57,985,141 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl941,123,228 - 41,123,334 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl863,594,040 - 63,594,146 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl182,497,262 - 2,497,368 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl148,330,468 - 8,330,574 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3118,319,647 - 118,319,753 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1412,026,689 - 12,026,795 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl141,153,338 - 1,153,444 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1058,702,564 - 58,702,670 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl670,813,893 - 70,813,999 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl689,930,717 - 89,930,823 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl168,791,097 - 68,791,203 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1847,142,396 - 47,142,502 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5141,522,271 - 141,522,377 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl235,528,616 - 35,528,722 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1326,963,303 - 26,963,409 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl773,233,178 - 73,233,284 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX15,390,052 - 15,390,158 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl6120,492,486 - 120,492,592 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1576,173,011 - 76,173,117 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1648,041,919 - 48,042,025 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX131,991,651 - 131,991,757 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1741,675,625 - 41,675,731 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5129,832,346 - 129,832,452 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005501537
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82226,689,104 - 226,689,210 (-)NCBI
mRatBN7.22224,015,573 - 224,015,679 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-51128 BioCyc
Ensembl Genes ENSRNOG00000062872 Ensembl
  ENSRNOG00000063323 Ensembl
  ENSRNOG00000063428 Ensembl
  ENSRNOG00000063622 Ensembl
  ENSRNOG00000063963 Ensembl
  ENSRNOG00000064256 Ensembl
  ENSRNOG00000064676 Ensembl
  ENSRNOG00000064804 Ensembl
  ENSRNOG00000065299 Ensembl
  ENSRNOG00000065540 Ensembl
  ENSRNOG00000065588 Ensembl
  ENSRNOG00000065625 Ensembl
  ENSRNOG00000066032 Ensembl
  ENSRNOG00000066053 Ensembl
  ENSRNOG00000066073 Ensembl
  ENSRNOG00000066360 Ensembl
  ENSRNOG00000066819 Ensembl
  ENSRNOG00000066905 Ensembl
  ENSRNOG00000066923 Ensembl
  ENSRNOG00000067206 Ensembl
  ENSRNOG00000067348 Ensembl
  ENSRNOG00000067349 Ensembl
  ENSRNOG00000067418 Ensembl
  ENSRNOG00000067456 Ensembl
  ENSRNOG00000067488 Ensembl
  ENSRNOG00000067580 Ensembl
  ENSRNOG00000067906 Ensembl
  ENSRNOG00000068007 Ensembl
  ENSRNOG00000068385 Ensembl
  ENSRNOG00000068454 Ensembl
  ENSRNOG00000068463 Ensembl
  ENSRNOG00000068558 Ensembl
  ENSRNOG00000068782 Ensembl
  ENSRNOG00000068819 Ensembl
  ENSRNOG00000068957 Ensembl
  ENSRNOG00000069081 Ensembl
  ENSRNOG00000069131 Ensembl
  ENSRNOG00000069228 Ensembl
  ENSRNOG00000069322 Ensembl
  ENSRNOG00000069677 Ensembl
  ENSRNOG00000069745 Ensembl
  ENSRNOG00000069934 Ensembl
  ENSRNOG00000070235 Ensembl
  ENSRNOG00000070552 Ensembl
  ENSRNOG00000070649 Ensembl
  ENSRNOG00000070790 Ensembl
NCBI Gene LOC120101140 ENTREZGENE
PhenoGen LOC120101140 PhenoGen
RatGTEx ENSRNOG00000069322 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120101140  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:150343107 737654 PROVISIONAL
2021-08-31 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-26 LOC120101140  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL