Msh4 (mutS homolog 4) - Rat Genome Database

Name: Msh4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Msh4 (mutS homolog 4) Rattus norvegicus

Analyze

Symbol:

Msh4

Name:

mutS homolog 4

RGD ID:

1309190

Description:

Predicted to enable double-stranded DNA binding activity. Predicted to be involved in reciprocal meiotic recombination. Predicted to act upstream of or within several processes, including homologous chromosome pairing at meiosis; ovarian follicle development; and spermatogenesis. Predicted to be located in recombination nodule and synaptonemal complex. Predicted to be part of MutSalpha complex. Predicted to be active in nucleus. Orthologous to human MSH4 (mutS homolog 4); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; 17beta-estradiol (ortholog).

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

LOC295541; mutS homolog 4 (E. coli); mutS protein homolog 4

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MSH4 (mutS homolog 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Msh4 (mutS homolog 4)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Msh4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MSH4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MSH4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Msh4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MSH4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MSH4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Msh4 (mutS homolog 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MSH4 (mutS homolog 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Msh4 (mutS homolog 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	msh4 (mutS homolog 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MSH4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	him-14	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	242,785,392 - 242,844,609 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	242,792,661 - 242,843,487 (-)	Ensembl
Rnor_6.0	2	260,057,708 - 260,108,897 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	260,057,855 - 260,108,897 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	278,716,760 - 278,773,060 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	251,801,090 - 251,851,133 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	251,815,109 - 251,866,523 (-)	NCBI
Celera	2	234,728,057 - 234,775,779 (-)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

medium chain acyl-CoA dehydrogenase deficiency (ISO)

oligospermia (ISO)

primary ovarian insufficiency (ISO)

Primary Ovarian Insufficiency 20 (ISO)

spermatogenic failure 2 (ISO)

spermatogenic failure 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

formaldehyde (ISO)

methapyrilene (ISO)

PCB138 (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

female gamete generation (ISO)

homologous chromosome pairing at meiosis (ISO)

meiotic cell cycle (ISO)

mismatch repair (IEA)

ovarian follicle development (ISO)

reciprocal meiotic recombination (IBA)

spermatogenesis (ISO)

Cellular Component

cellular_component (ND)

chromosome (ISO)

condensed chromosome (ISO)

condensed nuclear chromosome (ISO)

nucleus (IBA,ISO)

recombination nodule (ISO)

synaptonemal complex (ISO)

Molecular Function

ATP binding (IEA)

ATP-dependent DNA damage sensor activity (IEA)

double-stranded DNA binding (IBA)

mismatched DNA binding (IEA)

molecular_function (ND)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10809667	PMID:15467367	PMID:16260499	PMID:18316482	PMID:22164254	PMID:23555294	PMID:27760146

Genomics

Comparative Map Data

Msh4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	242,785,392 - 242,844,609 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	242,792,661 - 242,843,487 (-)	Ensembl
Rnor_6.0	2	260,057,708 - 260,108,897 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	260,057,855 - 260,108,897 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	278,716,760 - 278,773,060 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	251,801,090 - 251,851,133 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	251,815,109 - 251,866,523 (-)	NCBI
Celera	2	234,728,057 - 234,775,779 (-)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

MSH4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	75,796,882 - 75,913,242 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	75,796,882 - 75,913,242 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	76,262,567 - 76,378,927 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	76,035,218 - 76,151,511 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	75,974,650 - 76,090,944	NCBI
Celera	1	74,502,536 - 74,619,128 (+)	NCBI
Cytogenetic Map	1	p31.1	NCBI
HuRef	1	74,392,386 - 74,509,072 (+)	NCBI		HuRef
CHM1_1	1	76,377,843 - 76,494,293 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	75,633,544 - 75,751,219 (+)	NCBI

Msh4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	153,562,778 - 153,611,775 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	153,562,786 - 153,611,775 (-)	Ensembl
GRCm38	3	153,857,141 - 153,906,138 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	153,857,149 - 153,906,138 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	153,520,111 - 153,569,102 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	153,794,533 - 153,843,524 (-)	NCBI			mm8
Celera	3	160,320,812 - 160,369,813 (-)	NCBI		Celera
Cytogenetic Map	3	H3	NCBI

Msh4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	17,093,573 - 17,154,910 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	17,093,573 - 17,154,910 (-)	NCBI	ChiLan1.0	ChiLan1.0

MSH4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	76,983,852 - 77,099,896 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	76,983,852 - 77,099,896 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	75,011,947 - 75,130,036 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MSH4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	70,745,777 - 70,822,507 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	70,746,634 - 70,823,004 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	73,406,292 - 73,487,796 (-)	NCBI
ROS_Cfam_1.0	6	71,334,444 - 71,416,137 (-)	NCBI
UMICH_Zoey_3.1	6	70,834,791 - 70,912,065 (-)	NCBI
UNSW_CanFamBas_1.0	6	70,780,166 - 70,856,995 (-)	NCBI
UU_Cfam_GSD_1.0	6	71,269,093 - 71,350,596 (-)	NCBI

Msh4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	87,311,249 - 87,388,210 (+)	NCBI
SpeTri2.0	NW_004936571	2,827,283 - 2,898,562 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSH4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	137,410,691 - 137,534,233 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	137,410,820 - 137,524,459 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	127,382,425 - 127,496,604 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSH4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	57,283,723 - 57,397,871 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	20	57,284,575 - 57,396,797 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666033	60,112,696 - 60,228,261 (+)	NCBI	Vero_WHO_p1.0

Msh4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	21,098,101 - 21,167,398 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624742	21,098,102 - 21,167,472 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH127932

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	242,844,856 - 242,845,073 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	260,110,408 - 260,110,624	NCBI	Rnor6.0
Rnor_5.0	2	278,774,475 - 278,774,691	UniSTS	Rnor5.0
RGSC_v3.4	2	251,852,644 - 251,852,860	UniSTS	RGSC3.4
Celera	2	234,777,290 - 234,777,506	UniSTS
RH 3.4 Map	2	1629.8	UniSTS
Cytogenetic Map	2	q45	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
9587428	Epfw6	Epididymal fat weight QTL 6	7.47	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	2	223389739	249053267	Rat
7411555	Bw132	Body weight QTL 132		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	223389739	249053267	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		hepatic copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	229059610	249053267	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	14
Count of miRNA genes:	14
Interacting mature miRNAs:	14
Transcripts:	ENSRNOT00000014106
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										3
Low								22		20
Below cutoff	8	10	2	18	2	3	3	36	22	14	10	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000014106 ⟹ ENSRNOP00000014106

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	242,792,661 - 242,843,487 (-)	Ensembl
Rnor_6.0 Ensembl	2	260,057,855 - 260,108,897 (-)	Ensembl

RefSeq Acc Id:

NM_001106477 ⟹ NP_001099947

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	242,792,991 - 242,843,346 (-)	NCBI
Rnor_6.0	2	260,057,855 - 260,108,897 (-)	NCBI
Rnor_5.0	2	278,716,760 - 278,773,060 (-)	NCBI
RGSC_v3.4	2	251,801,090 - 251,851,133 (-)	RGD
Celera	2	234,728,057 - 234,775,779 (-)	RGD

Sequence:

show sequence

ATGCTGAGGCAGGAGGCTACTTCGCTCTCGAGTTCCCCACGGTGGACGCCATCCCGGAGGGAGG
TCCCCCGCCGGAGGACGCCGGCCTCCGCGTCCAGGCCGAGCACAGAAGGTGCCGTGGCCGACAG
GAGCAGCAGCAGCAGCAGCAGCAGCCCGGCGCCGGCGGCCGCTCCAGGTTCATCATTTGGAAAC
AAAAGATCTTACACTACACACAAAGCTGCATCCAATTTTCCTGTTGGTACGAGCTCGTCTTCTG
CACAAGATACCACGTATCCACATACGTTTAGAACTCCGTTATCTGCTGGAAATCCCCAGAGATC
ATATAAAGGTTGGACACCACAAGTAGGACTTTCAGCCACATCCTCCGCGGTGTCTGCACATGCC
CCGTCAGTCATTGTAGCAGTGGTGGAAGGAAGAGGGCTGGCTAGAGGCGAGATAGGAATGGCAA
GCATCGATTTAAAAAGCCCACAGATTATGTTGTCACAGTTTGCAGACAACACAACATATGCAAA
GGTGATCACTAAACTCCAAGTTTTATCACCTTTAGAAATAATAATGTCAAATACTGCTTGTGTT
GTGGGAAATTCAACCAAGTTATTTACTCTGATCACAGAAAATTTTAAGAACGTTAATTTCACTA
CAGTCCAAAGGAAATACTTCAACGAAACAAAGGGCTTAGAGTACATTGAACAGTTGTGCATAGC
TGAGTTCAGCTCTGTCCTAATGGAGGTTCAGTCCAGGTATTACTGCCTTGCAGCTGCCGCAGCC
TTATTAAAATATGTTGAATTTATTCAAAATTCAGTGTATGCACCCAAATCGCTAAAGATTTATT
TCCAAGGTAGTGAGCAGACAGCCATGATAGATTCATCATCAGCCCAAAACCTGGAGCTGTTAGT
TAATAACCAGGACTACAGGAGTAATCACACTCTCTTTGGTGTTTTAAATTACACCAAGACTGCA
GGAGGGAGCAGAAGGCTGCGCTCCAACATCCTGGAGCCGCTGGTTGATGTGGAAACAATCAGCA
TGAGGCTGGACTGTGTCCAGGAGCTGCTTCAGGACGAGGAGCTCTTCTATGGACTCCAGTCAGT
CATATCAAGATTCCTGGACACAGAGCAGCTGCTTTCTGTTTTGGTTCAGATTCCAAAGCAAGAC
ACGGTTAATGCAGCTGAATCAAAGATAACAAACTTGATTTATCTGAAGCACACATTGGAACTTG
TGGATCCTTTAAAGGTTGCTTTAAAGAACTGTAGCACGCCTTTACTAAGAGCTTACTATGGCTC
CTTGGAAGACCATAGGTTTGGGCTAATACTTGAGAAGATTAAAACAGTGATAAATGATGATGCA
AGGTACATGAAGGGCTGCCTGAACATGCGGACTCAGAAGTGCTATGCAGTGCGCTCCAACATCA
GTGAGTTCCTGGACATAGCCAGGAGGACATACACAGAGATAGTGGACGACATAGCAGGAATGAT
ATCACAGCTCGCAGAGAAGTACAGTCTTCCCTTACGGACCAGCTTCAGCTCCGCGAGGGGGTTT
TTCATCCAGATGACCACAGACTGCGCTGCGCTCTCCAGTGACCAGCTTCCTTCAGAGTTTATTA
AGATTTCTAAAGTGAAAAACTCATATAGCTTTACATCAGCAGATTTAATTAAAATGAATGAAAG
ATGCCAAGAGTCTTTGCGAGAAATCTATCACATGACCTACATGATAGTGTGCAAGCTGCTCAGT
GAGATCTACGAGCACATCCATTGCTTGTACAAGCTCTCGGACACAGTGTCAATGCTGGACATGC
TGCTGTCGTTTGCTCATGCCTGCACTCTCTCTGACTACGTTCGACCAGAGTTTACTGACACTTT
AGCCATCAAACAAGGATGGCATCCCATTCTTGAAAAAATATCTGCAGAGAAACCTGTTGCAAAC
AATACATATATCACAGAAGGGAGTAACGTTCTGATCATCACTGGACCAAATATGAGTGGAAAGT
CCACGTTCTTAAAGCAGATTGCTCTTTGTCAGATCATGGCCCAGATCGGCTCCTTCGTCCCAGC
ACAGTACGCCTCCTTCAGGATTGCTGCGCAGATCTTTACGAGAATCAGCACTGATGATGATATT
GAAACAAACTCTTCAACATTTATGAAAGAAATGAAAGAGATAGCATATATTCTTCACAATGCTA
ACGACAAGTCACTCATACTGATTGATGAGCTTGGCAGAGGCACTAATACAGAAGAAGGGACTGG
TATTTCTTATGCTGTCTGTGAGCATCTGCTGAGCACAAAGGCATTTACACTCTTCACTACCCAT
TTCCTGGAACTGTGCCATATAGACACCCTGTATCTTAATGTAGAAAACATGCATTTTGAAGTTC
AGCATGTGAAGAATACCTCAAGAAATAAGGATGCAATTTTGTATACTTACAAACTTTCCAGGGG
ACTCACAGAAGAAAAACACTATGGATTAAAAGCTGCAGAAGCCTCCTCACTTCCACCATCAATT
GTCTTGGATGCCAGAGAGATCACAACACAAATTACAAGGCAAATCTCGCAAAACCGAAGGAGTT
CCCCTGAGATGGATAGACAGAGAGCTGTGTACCATCTGGCTACAAGGCTTGTCCAGGTCGCTCG
AAACTCTCAGTTGGAGCCGGACAGGCTGCGGACATATCTGAGTAATCTCAAGAAGAAGTATGAA
GGGGACTTTCCCAGGGCTGCGGACCTTCCAGAGAAGACTGAGGAGTGA

hide sequence

RefSeq Acc Id:

XM_039102112 ⟹ XP_038958040

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	242,785,392 - 242,844,609 (-)	NCBI

RefSeq Acc Id:

XM_039102113 ⟹ XP_038958041

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	242,792,772 - 242,826,500 (-)	NCBI

RefSeq Acc Id:

XM_039102114 ⟹ XP_038958042

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	242,792,772 - 242,816,557 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099947	(Get FASTA)	NCBI Sequence Viewer
	XP_038958040	(Get FASTA)	NCBI Sequence Viewer
	XP_038958041	(Get FASTA)	NCBI Sequence Viewer
	XP_038958042	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82522	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001099947 ⟸ NM_001106477

- UniProtKB:

F1M9U4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLRQEATSLSSSPRWTPSRREVPRRRTPASASRPSTEGAVADRSSSSSSSSPAPAAAPGSSFGN
KRSYTTHKAASNFPVGTSSSSAQDTTYPHTFRTPLSAGNPQRSYKGWTPQVGLSATSSAVSAHA
PSVIVAVVEGRGLARGEIGMASIDLKSPQIMLSQFADNTTYAKVITKLQVLSPLEIIMSNTACV
VGNSTKLFTLITENFKNVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEVQSRYYCLAAAAA
LLKYVEFIQNSVYAPKSLKIYFQGSEQTAMIDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTA
GGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFYGLQSVISRFLDTEQLLSVLVQIPKQD
TVNAAESKITNLIYLKHTLELVDPLKVALKNCSTPLLRAYYGSLEDHRFGLILEKIKTVINDDA
RYMKGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMISQLAEKYSLPLRTSFSSARGF
FIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLS
EIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILEKISAEKPVAN
NTYITEGSNVLIITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQYASFRIAAQIFTRISTDDDI
ETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTGISYAVCEHLLSTKAFTLFTTH
FLELCHIDTLYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGLTEEKHYGLKAAEASSLPPSI
VLDAREITTQITRQISQNRRSSPEMDRQRAVYHLATRLVQVARNSQLEPDRLRTYLSNLKKKYE
GDFPRAADLPEKTEE

hide sequence

RefSeq Acc Id:

ENSRNOP00000014106 ⟸ ENSRNOT00000014106

RefSeq Acc Id:	XP_038958040 ⟸ XM_039102112
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958041 ⟸ XM_039102113
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958042 ⟸ XM_039102114
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M9U4-F1-model_v2	AlphaFold	F1M9U4	1-911	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309190	AgrOrtholog
BioCyc Gene	G2FUF-50777	BioCyc
Ensembl Genes	ENSRNOG00000010431	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000014106	ENTREZGENE
	ENSRNOP00000014106.5	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014106	ENTREZGENE
	ENSRNOT00000014106.6	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.110	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	DNA_mismatch_repair_MutS	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_C	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_clamp	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_core	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_sf	UniProtKB/TrEMBL
	DNA_mmatch_repair_MutS_con_dom	UniProtKB/TrEMBL
	MutS_con_dom_sf	UniProtKB/TrEMBL
	MutS_family	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	rno:295541	UniProtKB/TrEMBL
NCBI Gene	295541	ENTREZGENE
PANTHER	PTHR11361	UniProtKB/TrEMBL
Pfam	MutS_II	UniProtKB/TrEMBL
	MutS_III	UniProtKB/TrEMBL
	MutS_IV	UniProtKB/TrEMBL
	MutS_V	UniProtKB/TrEMBL
PhenoGen	Msh4	PhenoGen
PIRSF	MSH2	UniProtKB/TrEMBL
PROSITE	DNA_MISMATCH_REPAIR_2	UniProtKB/TrEMBL
SMART	MUTSac	UniProtKB/TrEMBL
	MUTSd	UniProtKB/TrEMBL
Superfamily-SCOP	DNA_mismatch_repair_MutS_connt	UniProtKB/TrEMBL
	DNA_repair_MutS_domIII	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	F1M9U4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-19	Msh4	mutS homolog 4	Msh4	mutS homolog 4 (E. coli)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Msh4	mutS homolog 4 (E. coli)	Msh4_predicted	mutS homolog 4 (E. coli) (predicted)	'predicted' is removed	2292626	APPROVED
2008-01-09	Msh4_predicted	mutS homolog 4 (E. coli) (predicted)	LOC688159	similar to mutS homolog 4	Data Merged	1643240	APPROVED
2006-11-20	LOC688159	similar to mutS homolog 4			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Msh4_predicted	mutS homolog 4 (E. coli) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM