St6galnac3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3) - Rat Genome Database

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Gene: St6galnac3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3) Rattus norvegicus
Analyze
Symbol: St6galnac3
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
RGD ID: 3677
Description: Enables sialyltransferase activity. Involved in protein glycosylation. Predicted to be located in nucleoplasm. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3; galNAc alpha-2,6-sialyltransferase III; sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C; sialyltransferase 7 ((alpha-N-acetylneuraminyl 23-betagalactosyl-13)-N-acetyl galactosaminide alpha-26-sialyltransferase) C; sialyltransferase 7c; SIAT7-C; Siat7c; ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3; ST6 GalNAc alpha-2,6-sialyltransferase 3; ST6GalNAc III; ST6GalNAcIII; STY
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22242,129,755 - 242,645,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2249,942,272 - 250,461,906 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02247,829,012 - 248,348,657 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02242,739,510 - 243,254,284 (-)NCBIRnor_WKY
Rnor_6.02259,379,653 - 259,918,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02278,043,763 - 278,583,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42251,284,792 - 251,701,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12251,520,005 - 251,716,157 (-)NCBI
Celera2234,066,071 - 234,594,925 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Molecular cloning of a developmentally regulated N-acetylgalactosamine alpha2,6-sialyltransferase specific for sialylated glycoconjugates. Sjoberg ER, etal., J Biol Chem 1996 Mar 29;271(13):7450-9.
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:17123352  


Genomics

Comparative Map Data
St6galnac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22242,129,755 - 242,645,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2249,942,272 - 250,461,906 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02247,829,012 - 248,348,657 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02242,739,510 - 243,254,284 (-)NCBIRnor_WKY
Rnor_6.02259,379,653 - 259,918,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02278,043,763 - 278,583,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42251,284,792 - 251,701,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12251,520,005 - 251,716,157 (-)NCBI
Celera2234,066,071 - 234,594,925 (-)NCBICelera
Cytogenetic Map2q45NCBI
ST6GALNAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,074,746 - 76,637,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl176,074,746 - 76,634,603 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,540,431 - 77,103,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,312,992 - 76,869,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 34176,252,424 - 76,808,653NCBI
Celera174,780,500 - 75,336,477 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef174,670,490 - 75,226,897 (+)NCBIHuRef
CHM1_1176,656,258 - 77,212,341 (+)NCBICHM1_1
T2T-CHM13v2.0175,912,700 - 76,475,062 (+)NCBIT2T-CHM13v2.0
St6galnac3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393152,903,911 - 153,430,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3152,903,903 - 153,430,811 (-)EnsemblGRCm39 Ensembl
GRCm383153,198,274 - 153,725,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,198,266 - 153,725,174 (-)EnsemblGRCm38mm10GRCm38
MGSCv373152,865,473 - 153,388,097 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363153,139,895 - 153,662,519 (-)NCBIMGSCv36mm8
Celera3159,658,440 - 160,186,623 (-)NCBICelera
Cytogenetic Map3H3NCBI
St6galnac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542316,406,780 - 16,916,121 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542316,405,309 - 16,916,163 (-)NCBIChiLan1.0ChiLan1.0
ST6GALNAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,377,327 - 77,936,011 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,377,482 - 77,930,220 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0175,290,496 - 75,851,683 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ST6GALNAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,060,406 - 70,583,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,062,555 - 70,574,865 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha672,717,608 - 73,247,248 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0670,647,955 - 71,172,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl670,647,963 - 71,163,211 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1670,150,216 - 70,673,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,096,617 - 70,619,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0670,584,540 - 71,108,132 (-)NCBIUU_Cfam_GSD_1.0
St6galnac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505887,553,791 - 88,062,703 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365713,064,150 - 3,572,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GALNAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6136,633,441 - 137,201,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16136,633,410 - 137,201,213 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,002,391 - 127,117,890 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST6GALNAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12056,415,330 - 57,085,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603360,430,142 - 60,992,129 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St6galnac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474220,407,410 - 20,928,766 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474220,405,342 - 20,928,792 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D2Rat366  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,450,738 - 242,450,940 (+)MAPPERmRatBN7.2
Rnor_6.02259,705,194 - 259,705,395NCBIRnor6.0
Rnor_5.02278,371,515 - 278,371,716UniSTSRnor5.0
RGSC_v3.42251,604,993 - 251,605,195RGDRGSC3.4
RGSC_v3.42251,604,994 - 251,605,195UniSTSRGSC3.4
RGSC_v3.12251,619,601 - 251,619,802RGD
Celera2234,385,005 - 234,385,206UniSTS
RH 3.4 Map21639.9RGD
RH 3.4 Map21639.9UniSTS
RH 2.0 Map21209.8RGD
SHRSP x BN Map2110.2099RGD
Cytogenetic Map2q45UniSTS
RH127926  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,129,804 - 242,130,015 (+)MAPPERmRatBN7.2
Rnor_6.02259,379,555 - 259,379,765NCBIRnor6.0
Rnor_5.02278,043,665 - 278,043,875UniSTSRnor5.0
RGSC_v3.42251,284,694 - 251,284,904UniSTSRGSC3.4
Celera2234,065,973 - 234,066,183UniSTS
RH 3.4 Map21644.8UniSTS
Cytogenetic Map2q45UniSTS
RH132011  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,480,607 - 242,480,787 (+)MAPPERmRatBN7.2
Rnor_6.02259,734,440 - 259,734,619NCBIRnor6.0
Rnor_5.02278,400,997 - 278,401,176UniSTSRnor5.0
Celera2234,413,030 - 234,413,209UniSTS
RH 3.4 Map21629.8UniSTS
Cytogenetic Map2q45UniSTS
BE103171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,598,692 - 242,598,845 (+)MAPPERmRatBN7.2
Rnor_6.02259,852,859 - 259,853,011NCBIRnor6.0
Rnor_5.02278,517,623 - 278,517,775UniSTSRnor5.0
RGSC_v3.42251,641,857 - 251,642,009UniSTSRGSC3.4
Celera2234,530,073 - 234,530,225UniSTS
RH 3.4 Map21629.8UniSTS
Cytogenetic Map2q45UniSTS
BF399814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,629,800 - 242,629,992 (+)MAPPERmRatBN7.2
Rnor_6.02259,883,014 - 259,883,205NCBIRnor6.0
Rnor_5.02278,547,778 - 278,547,969UniSTSRnor5.0
RGSC_v3.42251,686,283 - 251,686,474UniSTSRGSC3.4
Celera2234,559,725 - 234,559,916UniSTS
RH 3.4 Map21630.2UniSTS
Cytogenetic Map2q45UniSTS
BF390470  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,519,346 - 242,519,496 (+)MAPPERmRatBN7.2
Rnor_6.02259,773,573 - 259,773,722NCBIRnor6.0
Rnor_5.02278,440,130 - 278,440,279UniSTSRnor5.0
Celera2234,451,744 - 234,451,893UniSTS
RH 3.4 Map21629.8UniSTS
Cytogenetic Map2q45UniSTS
D7S1602  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2234,327,078 - 234,328,380UniSTS
Cytogenetic Map2q45UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87hepatic copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:309
Count of miRNA genes:191
Interacting mature miRNAs:241
Transcripts:ENSRNOT00000034316, ENSRNOT00000065262
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 4 4 4 72 35 22 9
Low 3 43 52 36 15 36 8 9 2 18 2 8
Below cutoff 1 1 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000082253   ⟹   ENSRNOP00000073209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)Ensembl
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091407   ⟹   ENSRNOP00000075041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2242,129,763 - 242,479,606 (-)Ensembl
Rnor_6.0 Ensembl2259,379,513 - 259,382,765 (-)Ensembl
RefSeq Acc Id: NM_019123   ⟹   NP_061996
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22242,129,755 - 242,645,096 (-)NCBI
Rnor_6.02259,379,653 - 259,918,813 (-)NCBI
Rnor_5.02278,043,763 - 278,583,289 (-)NCBI
RGSC_v3.42251,284,792 - 251,701,550 (-)RGD
Celera2234,066,071 - 234,594,925 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102131   ⟹   XP_038958059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22242,129,755 - 242,645,115 (-)NCBI
RefSeq Acc Id: XM_039102132   ⟹   XP_038958060
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22242,284,602 - 242,645,120 (-)NCBI
Protein Sequences
Protein RefSeqs NP_061996 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH72501 (Get FASTA)   NCBI Sequence Viewer  
  EDL82516 (Get FASTA)   NCBI Sequence Viewer  
  Q64686 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_061996   ⟸   NM_019123
- UniProtKB: A0A096MK04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073209   ⟸   ENSRNOT00000082253
RefSeq Acc Id: ENSRNOP00000075041   ⟸   ENSRNOT00000091407
RefSeq Acc Id: XP_038958059   ⟸   XM_039102131
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958060   ⟸   XM_039102132
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64686-F1-model_v2 AlphaFold Q64686 1-305 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691828
Promoter ID:EPDNEW_R2353
Type:single initiation site
Name:St6galnac3_1
Description:ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02259,898,539 - 259,898,599EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3677 AgrOrtholog
BioCyc Gene G2FUF-50785 BioCyc
Ensembl Genes ENSRNOG00000056894 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000073209 ENTREZGENE
  ENSRNOP00000073209.1 UniProtKB/TrEMBL
  ENSRNOP00000075041.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082253 ENTREZGENE
  ENSRNOT00000082253.2 UniProtKB/TrEMBL
  ENSRNOT00000091407.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7099426 IMAGE-MGC_LOAD
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29758 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91713 IMAGE-MGC_LOAD
NCBI Gene 29758 ENTREZGENE
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St6galnac3 PhenoGen
TIGR TC207757
UniProt A0A096MK04 ENTREZGENE, UniProtKB/TrEMBL
  F1M6L7_RAT UniProtKB/TrEMBL
  Q64686 ENTREZGENE
  Q6IN13_RAT UniProtKB/TrEMBL
  SIA7C_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 St6galnac3  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3  St6galnac3  ST6 GalNAc alpha-2,6-sialyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-27 St6galnac3  ST6 GalNAc alpha-2,6-sialyltransferase 3  St6galnac3  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 St6galnac3  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3  Siat7c  sialyltransferase 7c  Symbol and Name updated 1299863 APPROVED
2002-06-10 Siat7c  sialyltransferase 7c      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expression is developmentally regulated in brain and constant expression is seen in spleen, kidney, and lung 69997
gene_protein 305 amino acids 69997