Adgrl2 (adhesion G protein-coupled receptor L2) - Rat Genome Database
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Gene: Adgrl2 (adhesion G protein-coupled receptor L2) Rattus norvegicus
Analyze
Symbol: Adgrl2
Name: adhesion G protein-coupled receptor L2
RGD ID: 620835
Description: Exhibits PDZ domain binding activity. Involved in brain development. Localizes to neuron projection. Orthologous to human ADGRL2 (adhesion G protein-coupled receptor L2); INTERACTS WITH 2,4-dinitrotoluene; 3,4-methylenedioxymethamphetamine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: calcium-independent alpha-latrotoxin receptor 2; calcium-independent alpha-latrotoxin receptor homolog 2; Cirl-2; Cirl2; Cl2ac; latrophilin 2; latrophilin-2; Lphn2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.0 Ensembl2258,792,839 - 258,997,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02258,792,838 - 258,997,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02277,462,664 - 277,666,602 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02273,089,566 - 273,220,878 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42247,060,645 - 247,201,904 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12247,075,258 - 247,216,511 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
microcephaly  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:9830014   PMID:16641100   PMID:23012479   PMID:24613359   PMID:28972101  


Genomics

Comparative Map Data
Adgrl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.0 Ensembl2258,792,839 - 258,997,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02258,792,838 - 258,997,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02277,462,664 - 277,666,602 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02273,089,566 - 273,220,878 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42247,060,645 - 247,201,904 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12247,075,258 - 247,216,511 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBICelera
Cytogenetic Map2q45NCBI
ADGRL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl181,306,147 - 81,992,436 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl181,306,160 - 81,992,436 (+)EnsemblGRCh38hg38GRCh38
GRCh38181,306,104 - 81,993,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37181,771,877 - 82,459,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36182,038,670 - 82,230,695 (+)NCBINCBI36hg18NCBI36
Build 34181,978,102 - 82,170,127NCBI
Celera180,498,753 - 80,690,763 (+)NCBI
Cytogenetic Map1p31.1NCBI
HuRef180,397,423 - 80,589,511 (+)NCBIHuRef
CHM1_1182,280,429 - 82,573,464 (+)NCBICHM1_1
Adgrl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393148,521,222 - 148,695,808 (-)NCBIGRCm39mm39
GRCm39 Ensembl3148,521,219 - 148,696,191 (-)Ensembl
GRCm383148,815,586 - 148,989,096 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3148,815,583 - 148,990,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv373148,478,550 - 148,617,599 (-)NCBIGRCm37mm9NCBIm37
MGSCv363148,752,972 - 148,926,949 (-)NCBImm8
Celera3155,281,713 - 155,421,190 (-)NCBICelera
Cytogenetic Map3H3NCBI
Adgrl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542311,787,435 - 12,009,476 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542311,789,313 - 12,062,478 (-)NCBIChiLan1.0ChiLan1.0
ADGRL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1183,124,539 - 83,317,455 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl183,086,465 - 83,317,446 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0180,506,240 - 81,189,353 (+)NCBIMhudiblu_PPA_v0panPan3
ADGRL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl665,596,814 - 65,750,672 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1665,596,814 - 66,216,074 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Adgrl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366083,465,889 - 3,678,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6131,727,083 - 132,366,088 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16131,727,082 - 132,366,106 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26121,953,589 - 122,144,924 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADGRL2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12051,300,132 - 51,535,947 (-)NCBI
ChlSab1.1 Ensembl2051,305,336 - 51,496,007 (-)Ensembl
Adgrl2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474215,590,828 - 16,129,074 (-)NCBI

Position Markers
D2Mgh22  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02254,132,315 - 254,132,424NCBIRnor6.0
Rnor_5.02272,824,538 - 272,824,647UniSTSRnor5.0
RGSC_v3.42247,305,963 - 247,306,073RGDRGSC3.4
RGSC_v3.42247,305,964 - 247,306,073UniSTSRGSC3.4
RGSC_v3.12247,320,570 - 247,320,680RGD
Celera2229,889,633 - 229,889,742UniSTS
Cytogenetic Map2q45UniSTS
D2Rat69  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02254,121,593 - 254,121,739NCBIRnor6.0
Rnor_5.02272,813,816 - 272,813,962UniSTSRnor5.0
RGSC_v3.42247,295,669 - 247,295,816RGDRGSC3.4
RGSC_v3.42247,295,670 - 247,295,816UniSTSRGSC3.4
RGSC_v3.12247,310,276 - 247,310,423RGD
Celera2229,879,373 - 229,879,519UniSTS
RH 2.0 Map21076.7RGD
SHRSP x BN Map2106.7499RGD
Cytogenetic Map2q45UniSTS
D2Got169  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02254,350,865 - 254,350,998NCBIRnor6.0
Rnor_5.02273,041,480 - 273,041,613UniSTSRnor5.0
RGSC_v3.42247,529,189 - 247,529,323RGDRGSC3.4
RGSC_v3.42247,529,190 - 247,529,323UniSTSRGSC3.4
RGSC_v3.12247,543,797 - 247,543,930RGD
Celera2230,097,868 - 230,098,009UniSTS
RH 3.4 Map21464.4RGD
RH 3.4 Map21464.4UniSTS
Cytogenetic Map2q45UniSTS
D2Got172  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02258,884,921 - 258,885,100NCBIRnor6.0
Rnor_5.02277,554,747 - 277,554,926UniSTSRnor5.0
RGSC_v3.42247,152,328 - 247,152,507RGDRGSC3.4
RGSC_v3.42247,152,329 - 247,152,508UniSTSRGSC3.4
RGSC_v3.12247,166,935 - 247,167,114RGD
Celera2229,739,045 - 229,739,224UniSTS
Cytogenetic Map2q45UniSTS
D2Got173  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02258,873,269 - 258,873,406NCBIRnor6.0
Rnor_5.02277,543,095 - 277,543,232UniSTSRnor5.0
RGSC_v3.42247,140,842 - 247,140,980RGDRGSC3.4
RGSC_v3.42247,140,843 - 247,140,980UniSTSRGSC3.4
RGSC_v3.12247,155,449 - 247,155,587RGD
Celera2229,727,559 - 229,727,696UniSTS
Cytogenetic Map2q45UniSTS
D2Got175  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02254,164,316 - 254,164,408NCBIRnor6.0
Rnor_5.02272,856,539 - 272,856,631UniSTSRnor5.0
RGSC_v3.42247,339,292 - 247,339,385RGDRGSC3.4
RGSC_v3.42247,339,293 - 247,339,385UniSTSRGSC3.4
RGSC_v3.12247,353,899 - 247,353,992RGD
Celera2229,923,112 - 229,923,204UniSTS
Cytogenetic Map2q45UniSTS
AU049049  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02254,418,270 - 254,418,423NCBIRnor6.0
Rnor_5.02273,108,885 - 273,109,038UniSTSRnor5.0
RGSC_v3.42247,596,694 - 247,596,841UniSTSRGSC3.4
Celera2230,165,108 - 230,165,253UniSTS
Cytogenetic Map2q45UniSTS
RH127891  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02258,987,023 - 258,987,242NCBIRnor6.0
Rnor_5.02277,656,480 - 277,656,699UniSTSRnor5.0
RGSC_v3.42247,257,742 - 247,257,961UniSTSRGSC3.4
Celera2229,841,572 - 229,841,791UniSTS
Cytogenetic Map2q45UniSTS
BF386408  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02254,132,898 - 254,133,114NCBIRnor6.0
Rnor_5.02272,825,121 - 272,825,337UniSTSRnor5.0
RGSC_v3.42247,306,547 - 247,306,763UniSTSRGSC3.4
Celera2229,890,216 - 229,890,432UniSTS
Cytogenetic Map2q45UniSTS
RH138530  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02258,825,074 - 258,825,234NCBIRnor6.0
Rnor_5.02277,494,900 - 277,495,060UniSTSRnor5.0
RGSC_v3.42247,092,648 - 247,092,808UniSTSRGSC3.4
Celera2229,679,364 - 229,679,524UniSTS
Cytogenetic Map2q45UniSTS
MARC_13861-13862:1007063395:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02258,793,087 - 258,793,469NCBIRnor6.0
Rnor_5.02277,462,913 - 277,463,295UniSTSRnor5.0
RGSC_v3.42247,060,658 - 247,061,040UniSTSRGSC3.4
Celera2229,647,389 - 229,647,771UniSTS
Cytogenetic Map2q45UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2236318496264899009Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2236318496264899009Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2228712271266435125Rat
631563Hcuc3Hepatic copper content QTL 33.87hepatic copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2245893572266435125Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2229793522266435125Rat
631514Scl8Serum cholesterol level QTL84.4blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)2231621666266435125Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2229606682264899009Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2217743855262743855Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2228712271266435125Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2208594330263179188Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2240679103266435125Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2228712271266435125Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2240679103266435125Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2228712271266435125Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2228712271266435125Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:920
Count of miRNA genes:239
Interacting mature miRNAs:286
Transcripts:ENSRNOT00000040566, ENSRNOT00000042256, ENSRNOT00000045020, ENSRNOT00000045905
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 41 47 39 2 39 1 1 74 35 34 11 1
Low 2 2 10 2 17 2 7 10 7 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001190475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA899882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF063102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB579130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB608997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO556290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM039554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM068641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM099106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000042256   ⟹   ENSRNOP00000043979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2258,792,839 - 258,997,145 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000045020   ⟹   ENSRNOP00000041829
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2258,794,098 - 258,997,138 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000045905   ⟹   ENSRNOP00000042136
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2258,792,839 - 258,932,200 (-)Ensembl
RefSeq Acc Id: NM_001190475   ⟹   NP_001177404
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.02258,792,838 - 258,997,145 (-)NCBI
Rnor_5.02273,089,566 - 273,220,878 (-)NCBI
Rnor_5.02277,462,664 - 277,666,602 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302208   ⟹   NP_001289137
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.02258,792,838 - 258,997,145 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302209   ⟹   NP_001289138
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.02258,792,838 - 258,997,145 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302210   ⟹   NP_001289139
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.02258,792,838 - 258,997,145 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302211   ⟹   NP_001289140
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.02258,792,838 - 258,997,145 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302212   ⟹   NP_001289141
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 238,327,141 (-)NCBI
Rnor_6.02258,792,838 - 258,997,145 (-)NCBI
Celera2229,647,140 - 230,280,349 (-)NCBI
Sequence:
RefSeq Acc Id: NM_134408   ⟹   NP_599235
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,835,177 (-)NCBI
Rnor_6.02258,792,838 - 258,932,123 (-)NCBI
Rnor_5.02277,462,664 - 277,666,602 (-)NCBI
RGSC_v3.42247,060,645 - 247,201,904 (-)RGD
Celera2229,647,140 - 229,787,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101626   ⟹   XP_038957554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101627   ⟹   XP_038957555
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,870,252 (-)NCBI
RefSeq Acc Id: XM_039101628   ⟹   XP_038957556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,870,807 (-)NCBI
RefSeq Acc Id: XM_039101629   ⟹   XP_038957557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,900,262 (-)NCBI
RefSeq Acc Id: XM_039101630   ⟹   XP_038957558
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,853,178 (-)NCBI
RefSeq Acc Id: XM_039101631   ⟹   XP_038957559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,867,058 (-)NCBI
RefSeq Acc Id: XM_039101632   ⟹   XP_038957560
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101633   ⟹   XP_038957561
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101634   ⟹   XP_038957562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101635   ⟹   XP_038957563
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101636   ⟹   XP_038957564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101637   ⟹   XP_038957565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101638   ⟹   XP_038957566
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101639   ⟹   XP_038957567
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101640   ⟹   XP_038957568
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101641   ⟹   XP_038957569
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101642   ⟹   XP_038957570
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101644   ⟹   XP_038957572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,800 (-)NCBI
RefSeq Acc Id: XM_039101645   ⟹   XP_038957573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,800 (-)NCBI
RefSeq Acc Id: XM_039101646   ⟹   XP_038957574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101647   ⟹   XP_038957575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101648   ⟹   XP_038957576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,696,055 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101649   ⟹   XP_038957577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101650   ⟹   XP_038957578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,800 (-)NCBI
RefSeq Acc Id: XM_039101651   ⟹   XP_038957579
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,803 (-)NCBI
RefSeq Acc Id: XM_039101652   ⟹   XP_038957580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101653   ⟹   XP_038957581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101654   ⟹   XP_038957582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,395 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101655   ⟹   XP_038957583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,017 - 237,869,802 (-)NCBI
RefSeq Acc Id: XM_039101656   ⟹   XP_038957584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,989 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101657   ⟹   XP_038957585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,940 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101658   ⟹   XP_038957586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,017 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101659   ⟹   XP_038957587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,875 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101660   ⟹   XP_038957588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,875 - 237,869,800 (-)NCBI
RefSeq Acc Id: XM_039101661   ⟹   XP_038957589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,017 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101662   ⟹   XP_038957590
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,989 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101663   ⟹   XP_038957591
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,017 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101665   ⟹   XP_038957593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,018 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101666   ⟹   XP_038957594
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,054 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101667   ⟹   XP_038957595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,697,989 - 237,869,801 (-)NCBI
RefSeq Acc Id: XM_039101668   ⟹   XP_038957596
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,019 - 237,869,799 (-)NCBI
RefSeq Acc Id: XM_039101669   ⟹   XP_038957597
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,698,018 - 237,869,800 (-)NCBI
RefSeq Acc Id: XM_039101670   ⟹   XP_038957598
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,701,304 - 237,869,800 (-)NCBI
RefSeq Acc Id: XM_039101671   ⟹   XP_038957599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,707,523 - 237,869,801 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001177404 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289137 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289138 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289139 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289140 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289141 (Get FASTA)   NCBI Sequence Viewer  
  NP_599235 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957554 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957555 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957556 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957557 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957558 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957559 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957560 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957561 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957562 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957563 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957564 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957565 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957566 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957567 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957568 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957569 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957572 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957573 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957574 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957576 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957577 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957578 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957580 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957581 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957582 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957583 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957588 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957596 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957599 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC62654 (Get FASTA)   NCBI Sequence Viewer  
  AAC62655 (Get FASTA)   NCBI Sequence Viewer  
  AAC62656 (Get FASTA)   NCBI Sequence Viewer  
  AAC62657 (Get FASTA)   NCBI Sequence Viewer  
  AAC62658 (Get FASTA)   NCBI Sequence Viewer  
  AAC62659 (Get FASTA)   NCBI Sequence Viewer  
  AAC77815 (Get FASTA)   NCBI Sequence Viewer  
  EDL82446 (Get FASTA)   NCBI Sequence Viewer  
  EDL82447 (Get FASTA)   NCBI Sequence Viewer  
  EDL82448 (Get FASTA)   NCBI Sequence Viewer  
  EDL82449 (Get FASTA)   NCBI Sequence Viewer  
  EDL82450 (Get FASTA)   NCBI Sequence Viewer  
  EDL82451 (Get FASTA)   NCBI Sequence Viewer  
  EDL82452 (Get FASTA)   NCBI Sequence Viewer  
  EDL82453 (Get FASTA)   NCBI Sequence Viewer  
  EDL82454 (Get FASTA)   NCBI Sequence Viewer  
  EDL82455 (Get FASTA)   NCBI Sequence Viewer  
  EDL82456 (Get FASTA)   NCBI Sequence Viewer  
  EDL82457 (Get FASTA)   NCBI Sequence Viewer  
  EDL82458 (Get FASTA)   NCBI Sequence Viewer  
  EDL82459 (Get FASTA)   NCBI Sequence Viewer  
  EDL82460 (Get FASTA)   NCBI Sequence Viewer  
  O88923 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_599235   ⟸   NM_134408
- Peptide Label: isoform 1 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001177404   ⟸   NM_001190475
- Peptide Label: isoform 2 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289139   ⟸   NM_001302210
- Peptide Label: isoform 5 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289141   ⟸   NM_001302212
- Peptide Label: isoform 7 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot),   D3ZNG0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289138   ⟸   NM_001302209
- Peptide Label: isoform 4 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289137   ⟸   NM_001302208
- Peptide Label: isoform 3 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289140   ⟸   NM_001302211
- Peptide Label: isoform 6 precursor
- UniProtKB: O88923 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042136   ⟸   ENSRNOT00000045905
RefSeq Acc Id: ENSRNOP00000041829   ⟸   ENSRNOT00000045020
RefSeq Acc Id: ENSRNOP00000043979   ⟸   ENSRNOT00000042256
RefSeq Acc Id: XP_038957557   ⟸   XM_039101629
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957556   ⟸   XM_039101628
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957555   ⟸   XM_039101627
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957574   ⟸   XM_039101646
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038957562   ⟸   XM_039101634
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038957561   ⟸   XM_039101633
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957554   ⟸   XM_039101626
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957567   ⟸   XM_039101639
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038957560   ⟸   XM_039101632
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957576   ⟸   XM_039101648
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038957569   ⟸   XM_039101641
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038957568   ⟸   XM_039101640
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038957572   ⟸   XM_039101644
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038957559   ⟸   XM_039101631
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957558   ⟸   XM_039101630
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957579   ⟸   XM_039101651
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038957581   ⟸   XM_039101653
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038957582   ⟸   XM_039101654
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038957575   ⟸   XM_039101647
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038957563   ⟸   XM_039101635
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038957565   ⟸   XM_039101637
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038957580   ⟸   XM_039101652
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038957577   ⟸   XM_039101649
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038957566   ⟸   XM_039101638
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038957570   ⟸   XM_039101642
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038957564   ⟸   XM_039101636
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038957578   ⟸   XM_039101650
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038957573   ⟸   XM_039101645
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038957595   ⟸   XM_039101667
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038957590   ⟸   XM_039101662
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038957584   ⟸   XM_039101656
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038957583   ⟸   XM_039101655
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038957591   ⟸   XM_039101663
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038957589   ⟸   XM_039101661
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038957586   ⟸   XM_039101658
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038957593   ⟸   XM_039101665
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038957597   ⟸   XM_039101669
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038957596   ⟸   XM_039101668
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038957594   ⟸   XM_039101666
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038957587   ⟸   XM_039101659
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038957588   ⟸   XM_039101660
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038957585   ⟸   XM_039101657
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038957598   ⟸   XM_039101670
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038957599   ⟸   XM_039101671
- Peptide Label: isoform X39
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620835 AgrOrtholog
Ensembl Genes ENSRNOG00000032660 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000041829 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000042136 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000043979 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042256 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000045020 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000045905 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.740 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  4.10.1240.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GAIN_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_latrophilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_latrophilin_rcpt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Latrophilin-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lectin_gal-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lectin_gal-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171447 UniProtKB/Swiss-Prot
NCBI Gene 171447 ENTREZGENE
PANTHER PTHR12011:SF61 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gal_Lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Latrophilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Adgrl2 PhenoGen
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LATROPHILIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUEL_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HormR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AGRL2_RAT UniProtKB/Swiss-Prot
  D3ZBE9_RAT UniProtKB/TrEMBL
  D3ZNG0 ENTREZGENE, UniProtKB/TrEMBL
  F1M7T0_RAT UniProtKB/TrEMBL
  O88923 ENTREZGENE
UniProt Secondary O88918 UniProtKB/Swiss-Prot
  O88919 UniProtKB/Swiss-Prot
  O88920 UniProtKB/Swiss-Prot
  O88921 UniProtKB/Swiss-Prot
  O88922 UniProtKB/Swiss-Prot
  Q9Z174 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-16 Adgrl2  adhesion G protein-coupled receptor L2  Lphn2  latrophilin 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Lphn2  latrophilin 2  Cirl2  calcium-independent alpha-latrotoxin receptor homolog 2  Symbol and Name updated 1299863 APPROVED
2002-08-07 Cirl2  calcium-independent alpha-latrotoxin receptor homolog 2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in placenta, kidney, spleen, ovary, heart, and lung 632388
gene_product member of the CIRL family, a subfamily of large orphan receptors with structural features typical of both G-protein-coupled receptors and cell adhesion proteins 632388