Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | rheumatoid arthritis | | ISO | ST6GALNAC5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17379860 and PMID:17568789 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | rheumatoid arthritis | | ISO | ST6GALNAC5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17379860 and PMID:17568789 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
St6galnac5 (Rattus norvegicus - Norway rat) |
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ST6GALNAC5 (Homo sapiens - human) |
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St6galnac5 (Mus musculus - house mouse) |
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ST6GALNAC5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ST6GALNAC5 (Canis lupus familiaris - dog) |
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St6galnac5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ST6GALNAC5 (Sus scrofa - pig) |
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ST6GALNAC5 (Chlorocebus sabaeus - green monkey) |
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St6galnac5 (Heterocephalus glaber - naked mole-rat) |
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Variants in St6galnac5
1427 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D2Got177 |
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D2Got409 |
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RH143111 |
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BF409913 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 60 | ||||||||||||
Low | 9 | 6 | 5 | 6 | 14 | 18 | 30 | 8 | |||||
Below cutoff | 3 | 29 | 37 | 24 | 14 | 24 | 8 | 8 | 14 | 9 | 3 | 8 |
RefSeq Transcripts | NM_001271361 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039102815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AJ646872 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000072899 ⟹ ENSRNOP00000066049 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001271361 ⟹ NP_001258290 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039102815 ⟹ XP_038958743 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001258290 | (Get FASTA) | NCBI Sequence Viewer |
XP_038958743 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | CAG26701 | (Get FASTA) | NCBI Sequence Viewer |
EDL82513 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000066049 | ||
ENSRNOP00000066049.2 |
RefSeq Acc Id: | NP_001258290 ⟸ NM_001271361 |
- UniProtKB: | Q6ZXY9 (UniProtKB/TrEMBL), M0R986 (UniProtKB/TrEMBL), A0A9K3Y7N2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000066049 ⟸ ENSRNOT00000072899 |
RefSeq Acc Id: | XP_038958743 ⟸ XM_039102815 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-M0R986-F1-model_v2 | AlphaFold | M0R986 | 1-250 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1564252 | AgrOrtholog |
BioCyc Gene | G2FUF-50786 | BioCyc |
Ensembl Genes | ENSRNOG00000049676 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000072899 | ENTREZGENE |
ENSRNOT00000072899.3 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.90.1480.20 | UniProtKB/TrEMBL |
InterPro | Glyco_trans_29 | UniProtKB/TrEMBL |
GT29-like_sf | UniProtKB/TrEMBL | |
Sialyl_trans | UniProtKB/TrEMBL | |
KEGG Report | rno:365984 | UniProtKB/TrEMBL |
NCBI Gene | 365984 | ENTREZGENE |
PANTHER | ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 5 | UniProtKB/TrEMBL |
PTHR45906 | UniProtKB/TrEMBL | |
Pfam | Glyco_transf_29 | UniProtKB/TrEMBL |
PhenoGen | St6galnac5 | PhenoGen |
PIRSF | Sialyl_trans | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000049676 | RatGTEx |
UniProt | A0A9K3Y7N2 | ENTREZGENE, UniProtKB/TrEMBL |
M0R986 | ENTREZGENE | |
Q6ZXY9 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | M0R986 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-05-05 | St6galnac5 | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 | St6galnac5 | ST6 GalNAc alpha-2,6-sialyltransferase 5 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-04-27 | St6galnac5 | ST6 GalNAc alpha-2,6-sialyltransferase 5 | St6galnac5 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2015-07-29 | St6galnac5 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 | LOC680513 | similar to Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E) | Data merged from RGD:1590647 | 737654 | PROVISIONAL |
2013-08-07 | St6galnac5 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 | Siat7E | sialyltransferase 7E | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-11-20 | LOC680513 | similar to Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E) | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2006-02-09 | Siat7E | sialyltransferase 7E | Symbol and Name status set to provisional | 70820 | PROVISIONAL |