Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: St6galnac5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5) Rattus norvegicus
Analyze
Symbol: St6galnac5
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
RGD ID: 1564252
Description: Predicted to have alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide biosynthetic process. Predicted to localize to Golgi apparatus and integral component of membrane. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase V; GalNAc alpha-2,6-sialyltransferase V; GD1 alpha synthase; LOC680513; sialyltransferase 7E; Siat7E; similar to Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E); ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; ST6 GalNAc alpha-2,6-sialyltransferase 5; ST6GalNAcV
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: There is an assembly problem in the Rnor_6.0 reference genome assembly, and therefore, annotation of this gene is split across NW_007905725.1 and NW_007905726.1 in NCBI's Rattus norvegicus Annotation Release 105. [18 Jun 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02258,025,177 - 259,150,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2258,025,177 - 258,052,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02277,817,171 - 277,818,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02276,689,490 - 276,717,145 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2233,679,302 - 233,847,270 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on St6galnac5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564252
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.