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Gene: St6galnac5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5) Rattus norvegicus

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Symbol:

St6galnac5

Name:

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

RGD ID:

1564252

Description:

Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide biosynthetic process. Predicted to be located in Golgi membrane. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase V; GalNAc alpha-2,6-sialyltransferase V; GD1 alpha synthase; LOC680513; sialyltransferase 7E; Siat7E; similar to Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E); ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; ST6 GalNAc alpha-2,6-sialyltransferase 5; ST6GalNAcV

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

NCBI Annotation Information:

Note: There is an assembly problem in the Rnor_6.0 reference genome assembly, and therefore, annotation of this gene is split across NW_007905725.1 and NW_007905726.1 in NCBI's Rattus norvegicus Annotation Release 105. [18 Jun 2015]

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	244,398,604 - 244,571,100 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	244,402,589 - 244,571,097 (-)	Ensembl				GRCr8
mRatBN7.2	2	241,741,933 - 241,911,214 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	241,742,688 - 241,911,208 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	249,554,339 - 249,722,560 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	247,441,354 - 247,609,586 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	242,354,046 - 242,521,845 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	258,025,177 - 259,150,709 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	258,025,177 - 258,052,835 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	277,817,171 - 277,818,389 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	276,689,490 - 276,717,145 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	2	233,679,302 - 233,847,270 (-)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

Cuprizon (EXP)

DDE (ISO)

Didecyldimethylammonium (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

formaldehyde (ISO)

genistein (ISO)

glyphosate (EXP)

hydroquinone (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paraquat (ISO)

parathion (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

potassium chromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

terbufos (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ganglioside biosynthetic process (IBA)

glycosphingolipid biosynthetic process (ISO)

lipid metabolic process (IEA)

oligosaccharide biosynthetic process (ISO)

oligosaccharide metabolic process (IBA)

protein glycosylation (IEA)

Cellular Component

Golgi apparatus (IEA)

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity (IBA,ISO)

glycosyltransferase activity (IEA)

sialyltransferase activity (IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ganglioside metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10521438	PMID:12668675	PMID:15843597

Genomics

Comparative Map Data

St6galnac5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	244,398,604 - 244,571,100 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	244,402,589 - 244,571,097 (-)	Ensembl				GRCr8
mRatBN7.2	2	241,741,933 - 241,911,214 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	241,742,688 - 241,911,208 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	249,554,339 - 249,722,560 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	247,441,354 - 247,609,586 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	242,354,046 - 242,521,845 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	258,025,177 - 259,150,709 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	258,025,177 - 258,052,835 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	277,817,171 - 277,818,389 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	276,689,490 - 276,717,145 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	2	233,679,302 - 233,847,270 (-)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

ST6GALNAC5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	76,867,480 - 77,067,546 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	76,867,480 - 77,067,546 (+)	Ensembl			hg38	GRCh38
GRCh37	1	77,333,165 - 77,533,231 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	77,105,774 - 77,302,325 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	77,045,206 - 77,241,756	NCBI
Celera	1	75,572,629 - 75,769,169 (+)	NCBI		Celera
Cytogenetic Map	1	p31.1	NCBI
HuRef	1	75,463,113 - 75,660,214 (+)	NCBI		HuRef
CHM1_1	1	77,448,510 - 77,645,048 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	76,705,077 - 76,905,729 (+)	NCBI		T2T-CHM13v2.0

St6galnac5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	152,525,522 - 152,687,847 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	152,522,718 - 152,687,883 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	152,819,885 - 152,982,210 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	152,817,081 - 152,982,246 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	152,483,673 - 152,645,171 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	152,757,272 - 152,919,596 (-)	NCBI		MGSCv36	mm8
Celera	3	159,273,952 - 159,435,518 (-)	NCBI		Celera
Cytogenetic Map	3	H3	NCBI
cM Map	3	77.16	NCBI

ST6GALNAC5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	149,826,258 - 150,027,714 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	148,984,098 - 149,188,156 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	76,080,706 - 76,284,836 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	78,167,466 - 78,370,516 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	78,167,280 - 78,366,180 (+)	Ensembl			panPan2	panpan1.1

ST6GALNAC5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	69,706,717 - 69,867,760 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	69,709,114 - 69,867,648 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	72,366,015 - 72,525,097 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	70,295,425 - 70,454,897 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	70,296,050 - 70,455,316 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	69,798,107 - 69,957,045 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	69,744,317 - 69,903,731 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	70,230,805 - 70,390,076 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

St6galnac5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	88,305,513 - 88,462,943 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936571	3,815,823 - 3,973,328 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936571	3,815,867 - 3,971,219 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ST6GALNAC5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	136,204,374 - 136,390,995 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	136,207,838 - 136,391,083 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	126,450,055 - 126,451,320 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ST6GALNAC5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	56,110,411 - 56,299,639 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	56,113,473 - 56,131,866 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	61,222,546 - 61,409,715 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

St6galnac5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	20,023,494 - 20,188,072 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624742	20,021,252 - 20,188,542 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in St6galnac5
1437 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	92
Count of miRNA genes:	75
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000072899
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631563	Hcuc3	Hepatic copper content QTL 3	3.87		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	229059610	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
7411555	Bw132	Body weight QTL 132		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	223389739	249053267	Rat
9587428	Epfw6	Epididymal fat weight QTL 6	7.47	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	2	223389739	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat

Markers in Region

D2Got177

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,791,857 - 241,792,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	259,031,675 - 259,031,950	NCBI	Rnor6.0
Rnor_5.0	2	277,701,132 - 277,701,407	UniSTS	Rnor5.0
Celera	2	233,728,384 - 233,728,659	UniSTS
RH 3.4 Map	2	1654.8	RGD
RH 3.4 Map	2	1654.8	UniSTS
RH 2.0 Map	2	1228.0	RGD

D2Got409

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,791,874 - 241,792,155 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	259,031,692 - 259,031,972	NCBI	Rnor6.0
Rnor_5.0	2	277,701,149 - 277,701,429	UniSTS	Rnor5.0
Celera	2	233,728,401 - 233,728,681	UniSTS

RH143111

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,910,370 - 241,910,524 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	259,149,873 - 259,150,026	NCBI	Rnor6.0
Rnor_5.0	2	277,817,553 - 277,817,706	UniSTS	Rnor5.0
Celera	2	233,846,433 - 233,846,587	UniSTS
RH 3.4 Map	2	1649.01	UniSTS

BF409913

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,742,940 - 241,743,109 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	258,025,430 - 258,025,598	NCBI	Rnor6.0
Rnor_5.0	2	276,689,743 - 276,689,911	UniSTS	Rnor5.0
Celera	2	233,679,555 - 233,679,723	UniSTS
RH 3.4 Map	2	1651.02	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	8	40	136	77	76	47	87	47	6	273	144	1	118	63	76	29	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ646872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072899 ⟹ ENSRNOP00000066049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	244,402,589 - 244,571,097 (-)	Ensembl
mRatBN7.2 Ensembl	2	241,742,688 - 241,911,208 (-)	Ensembl
Rnor_6.0 Ensembl	2	258,025,177 - 258,052,835 (-)	Ensembl

RefSeq Acc Id:

NM_001271361 ⟹ NP_001258290

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	244,402,589 - 244,571,097 (-)	NCBI
mRatBN7.2	2	241,742,688 - 241,911,208 (-)	NCBI
Rnor_6.0	2	258,025,177 - 259,150,709 (-)	NCBI
Rnor_5.0	2	276,689,490 - 276,717,145 (-)	NCBI
Rnor_5.0	2	277,817,171 - 277,818,389 (-)	NCBI
Celera	2	233,679,302 - 233,847,270 (-)	NCBI

Sequence:

show sequence

AGTGTGTGGATCGCTGAGACTCGGAGGGTCCGGCTCAGTTTTAATTCTCCTCTAATCTCCGCAA
CAGCAGCGCTTCCCGGGTCCCGCGGCTCCTGCTCCCGCTCAGCCGCCCTCACTGCCAGGTGAGC
ATCTGAGCAGCCTCCGCCCCATCACCCGCCATGGACAACCTCCAAGAAAAAGTGGCTCCGGACG
CGCTTGCCTGAGAATTCCGCACAAAAGAGGAGCCCAAAATGAAGACCCTGATGCGCCATGGTCT
GGCAGTGTGTTTAGTGCTCACTACCATGTGCACCAGCTTGTTGCTCGTGTACAGCAGCCTCGGC
AGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGCGACTGCGACTGGCAGCACGCAGCTTGTGGAGAGCAGTCCCCAGCCACATAGAACCGC
CCCCGTAGGACCCCGGCAGCTAGACGGATACCTCGGTGTAGCAGACCACAAGCCCTTGAAAATG
CATTGCAAGGATTGCGCCCTGGTGACCAGCTCGGGGCACCTGCTGCGTAGTCAGCAGGGCCCCC
ACATCGACCAGACAGAGTGTGTTATCCGTATGAATGACGCCCCCACCCGAGGCTACGGGCTTGA
CGTGGGCAACCGCACAAGCCTGCGAGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAAC
CGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACA
TGCGGCGGGATGGCAAGGGCCAGGTGTACAATAACCTGCAGCTCCTCAGCCAAGTGCTGCCGCG
GCTGAAGGCCTTCATGATCACGCGCCACAAGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAG
ACTGGCAAAGACAGGAAGATCTCCAACACTTGGCTGAGCACTGGCTGGTTCACCATGACAATTG
CTCTGGAGCTCTGTGACAGGATCGATGTTTACGGCATGGTGCCCCCAGACTTCTGCAGGGACCC
AAAGCACCCTTCCGTACCCTATCATTACTATGAGCCTTCTGGACCCGATGAATGTACAATGTAC
CTCTCTCACGAACGAGGACGCAAGGGCAGTCACCACCGTTTCATTACAGAGAAACGGGTATTTA
AGAACTGGGCACGGACCTTCAACATTCACTTTTTCCAACCAGACTGGAAACCAGAACCACCCGC
TGTGAATCCTGCTGAGGATAAGCCTGTGTTCTGAGGGGTGAACGTGATGGATAGCATCCCTGCT
GTCTGGCAGAAGAACTTGACCTCTGGCAGGGAAATGGGAACTGAATGGGTGGCTGAGAAGAGCG
GCGTCCTTCAGCACCGTGGACAGAACCCGGCGGCCAGCGAACATTCCGGAATGCATACATTCTA
ATCAGTATTGTCTCTTGGAAAGAGCAACTGTAGCCACTGCCATAGCTAGGAACACTTCCAGGTC
TCTGAAGTATTGCCTTCAAATCTGAAACAGGAGCAGCCCAACTCTTAGTTGCGTTTCTTTACAG
ACATCCACGTCAAAGGATTTTTCTATCAGGCTGTAACCTAACCTGACCTGTAATCTTTGCCATT
TGTCAGACAAATTTGTGATTTGTAAAAGGCCTGAAAGTGTGGACGTGTTTCTGAAGAGCACATC
TCCAATGATTTTCATAAAGCAAATGTCTGCTATTTATTTATTGAGAGTTTTTTAGTGTACTCTA
GGCAGTATTTTTATAGATTATGATTATGTGGCAATTTATTCCTCCTGACTGTTTAATCCTGATC
GGTGGTCGGAATGGGCTAGGATTGGGCTGATGAGTTACTGAATTCACAAGGCTCGTTATTAGCT
TGAAATCGGTATTTGACGTGGAAGAGTGCACGTGAGAGTTGAACCTCT

hide sequence

RefSeq Acc Id:

XM_039102815 ⟹ XP_038958743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	244,398,604 - 244,571,100 (-)	NCBI
mRatBN7.2	2	241,741,933 - 241,911,214 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258290	(Get FASTA)	NCBI Sequence Viewer
	XP_038958743	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAG26701	(Get FASTA)	NCBI Sequence Viewer
	EDL82513	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066049
	ENSRNOP00000066049.2

RefSeq Acc Id:

NP_001258290 ⟸ NM_001271361

- UniProtKB:

Q6ZXY9 (UniProtKB/TrEMBL), M0R986 (UniProtKB/TrEMBL), A0A9K3Y7N2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKTLMRHGLAVCLVLTTMCTSLLLVYSSLGSQKERPPQQQQQQQQQQQQQQQQATATGSTQLVE
SSPQPHRTAPVGPRQLDGYLGVADHKPLKMHCKDCALVTSSGHLLRSQQGPHIDQTECVIRMND
APTRGYGLDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNL
QLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKISNTWLSTGWFTMTIALELCDRIDVYGM
VPPDFCRDPKHPSVPYHYYEPSGPDECTMYLSHERGRKGSHHRFITEKRVFKNWARTFNIHFFQ
PDWKPEPPAVNPAEDKPVF

hide sequence

Ensembl Acc Id:

ENSRNOP00000066049 ⟸ ENSRNOT00000072899

RefSeq Acc Id:	XP_038958743 ⟸ XM_039102815
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R986-F1-model_v2	AlphaFold	M0R986	1-250	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564252	AgrOrtholog
BioCyc Gene	G2FUF-50786	BioCyc
Ensembl Genes	ENSRNOG00000049676	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000072899	ENTREZGENE
	ENSRNOT00000072899.3	UniProtKB/TrEMBL
Gene3D-CATH	3.90.1480.20	UniProtKB/TrEMBL
InterPro	Glyco_trans_29	UniProtKB/TrEMBL
	GT29-like_sf	UniProtKB/TrEMBL
	Sialyl_trans	UniProtKB/TrEMBL
KEGG Report	rno:365984	UniProtKB/TrEMBL
NCBI Gene	365984	ENTREZGENE
PANTHER	ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 5	UniProtKB/TrEMBL
	PTHR45906	UniProtKB/TrEMBL
Pfam	Glyco_transf_29	UniProtKB/TrEMBL
PhenoGen	St6galnac5	PhenoGen
PIRSF	Sialyl_trans	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000049676	RatGTEx
UniProt	A0A9K3Y7N2	ENTREZGENE, UniProtKB/TrEMBL
	M0R986	ENTREZGENE
	Q6ZXY9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	M0R986	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-05	St6galnac5	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	St6galnac5	ST6 GalNAc alpha-2,6-sialyltransferase 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-04-27	St6galnac5	ST6 GalNAc alpha-2,6-sialyltransferase 5	St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	LOC680513	similar to Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E)	Data merged from RGD:1590647	737654	PROVISIONAL
2013-08-07	St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Siat7E	sialyltransferase 7E	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC680513	similar to Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	Siat7E	sialyltransferase 7E			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)