Tspan5 (tetraspanin 5) - Rat Genome Database

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Gene: Tspan5 (tetraspanin 5) Rattus norvegicus
Analyze
Symbol: Tspan5
Name: tetraspanin 5
RGD ID: 1303176
Description: Predicted to enable enzyme binding activity. Predicted to be involved in several processes, including positive regulation of Notch signaling pathway; protein localization to plasma membrane; and regulation of membrane protein ectodomain proteolysis. Predicted to be located in nucleoplasm. Predicted to be active in plasma membrane. Orthologous to human TSPAN5 (tetraspanin 5); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: tetraspan 5; tetraspanin-5; Tm4sf9; transmembrane 4 superfamily member 9; Tspan-5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,967,521 - 230,139,012 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2229,967,235 - 230,142,685 (+)EnsemblGRCr8
mRatBN7.22227,294,180 - 227,469,361 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,294,217 - 227,465,664 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2235,044,298 - 235,207,548 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,944,059 - 233,107,310 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,808,665 - 227,971,910 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,058,186 - 244,224,059 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,058,186 - 244,224,058 (+)Ensemblrn6Rnor6.0
Rnor_5.02262,587,481 - 262,753,105 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42236,314,737 - 236,487,072 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2219,449,291 - 219,612,375 (+)NCBICelera
RGSC_v3.12236,436,906 - 236,471,800 (+)NCBI
Cytogenetic Map2q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
Licochalcone B  (ISO)
maneb  (ISO)
menadione  (ISO)
methoxychlor  (EXP)
mifepristone  (EXP)
N,N-diethyl-m-toluamide  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
nucleoplasm  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Specific tetraspanin functions. Hemler ME J Cell Biol 2001 Dec 24;155(7):1103-7. Epub 2001 Dec 24.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23035126   PMID:23091066   PMID:36795458  


Genomics

Comparative Map Data
Tspan5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,967,521 - 230,139,012 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2229,967,235 - 230,142,685 (+)EnsemblGRCr8
mRatBN7.22227,294,180 - 227,469,361 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,294,217 - 227,465,664 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2235,044,298 - 235,207,548 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,944,059 - 233,107,310 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,808,665 - 227,971,910 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,058,186 - 244,224,059 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,058,186 - 244,224,058 (+)Ensemblrn6Rnor6.0
Rnor_5.02262,587,481 - 262,753,105 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42236,314,737 - 236,487,072 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2219,449,291 - 219,612,375 (+)NCBICelera
RGSC_v3.12236,436,906 - 236,471,800 (+)NCBI
Cytogenetic Map2q44NCBI
TSPAN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38498,470,367 - 98,658,611 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl498,470,367 - 98,658,611 (-)Ensemblhg38GRCh38
GRCh37499,391,518 - 99,579,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36499,612,421 - 99,798,750 (-)NCBIBuild 36Build 36hg18NCBI36
Celera496,686,187 - 96,874,635 (-)NCBICelera
Cytogenetic Map4q23NCBI
HuRef495,128,912 - 95,317,094 (-)NCBIHuRef
CHM1_1499,368,380 - 99,556,673 (-)NCBICHM1_1
T2T-CHM13v2.04101,785,330 - 101,973,565 (-)NCBIT2T-CHM13v2.0
Tspan5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,447,609 - 138,610,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,447,956 - 138,613,666 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383138,741,848 - 138,904,433 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,742,195 - 138,907,905 (+)Ensemblmm10GRCm38
MGSCv373138,405,159 - 138,567,388 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363138,679,582 - 138,841,811 (+)NCBIMGSCv36mm8
Celera3145,169,944 - 145,332,005 (+)NCBICelera
Cytogenetic Map3H1NCBI
cM Map364.42NCBI
Tspan5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554058,725,761 - 8,759,785 (-)Ensembl
ChiLan1.0NW_0049554058,725,761 - 8,759,784 (-)NCBIChiLan1.0ChiLan1.0
TSPAN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2396,537,654 - 96,718,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1496,815,612 - 96,994,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0490,872,988 - 91,052,345 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14101,536,950 - 101,717,526 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4101,536,950 - 101,717,228 (-)EnsemblpanPan2panpan1.1
TSPAN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13220,707,449 - 20,878,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3220,709,539 - 20,878,426 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3221,053,555 - 21,228,770 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03220,890,676 - 21,061,654 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3220,890,676 - 21,061,716 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13220,859,415 - 21,029,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03220,685,159 - 20,855,851 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03219,041,028 - 19,211,757 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tspan5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530120,832,188 - 20,999,948 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493671749,752 - 217,654 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493671749,797 - 217,567 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8121,657,325 - 121,843,242 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18121,657,320 - 121,843,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,843,562 - 131,031,806 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1746,610,841 - 46,788,761 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl746,609,602 - 46,788,704 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603725,042,011 - 25,220,101 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475726,557,898 - 26,733,209 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475726,558,052 - 26,732,932 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan5
1293 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:688
Count of miRNA genes:297
Interacting mature miRNAs:378
Transcripts:ENSRNOT00000021381
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat

Markers in Region
RH137962  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,346,410 - 227,346,538 (+)MAPPERmRatBN7.2
Rnor_6.02244,109,646 - 244,109,773NCBIRnor6.0
Rnor_5.02262,638,938 - 262,639,065UniSTSRnor5.0
RGSC_v3.42236,367,438 - 236,367,565UniSTSRGSC3.4
Celera2219,501,347 - 219,501,474UniSTS
RH 3.4 Map21594.2UniSTS
Cytogenetic Map2q44UniSTS
RH143648  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,292,606 - 227,292,751 (+)MAPPERmRatBN7.2
Rnor_6.02244,056,582 - 244,056,726NCBIRnor6.0
Rnor_5.02262,585,877 - 262,586,021UniSTSRnor5.0
RGSC_v3.42236,313,131 - 236,313,275UniSTSRGSC3.4
Celera2219,447,687 - 219,447,831UniSTS
RH 3.4 Map21595.1UniSTS
Cytogenetic Map2q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
17 12 67 164 91 90 59 92 59 6 361 192 11 144 85 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021381   ⟹   ENSRNOP00000021381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,294,217 - 227,465,663 (+)Ensembl
Rnor_6.0 Ensembl2244,058,186 - 244,224,058 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109275   ⟹   ENSRNOP00000077542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,297,534 - 227,465,655 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109413   ⟹   ENSRNOP00000085734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,294,217 - 227,465,663 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111381   ⟹   ENSRNOP00000084759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2229,967,235 - 230,142,685 (+)Ensembl
mRatBN7.2 Ensembl2227,294,217 - 227,465,663 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119237   ⟹   ENSRNOP00000081518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,297,534 - 227,465,664 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000141716   ⟹   ENSRNOP00000101315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2229,967,241 - 230,139,011 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154137   ⟹   ENSRNOP00000100821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2229,967,241 - 230,139,011 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163282   ⟹   ENSRNOP00000098649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2230,003,313 - 230,139,011 (+)Ensembl
RefSeq Acc Id: NM_001004090   ⟹   NP_001004090
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,967,576 - 230,139,012 (+)NCBI
mRatBN7.22227,294,217 - 227,465,664 (+)NCBI
Rnor_6.02244,058,186 - 244,224,059 (+)NCBI
Rnor_5.02262,587,481 - 262,753,105 (+)NCBI
RGSC_v3.42236,314,737 - 236,487,072 (+)RGD
Celera2219,449,291 - 219,612,375 (+)RGD
Sequence:
RefSeq Acc Id: XM_039102726   ⟹   XP_038958654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,967,521 - 230,139,012 (+)NCBI
mRatBN7.22227,294,180 - 227,469,361 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001004090 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958654 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00136 (Get FASTA)   NCBI Sequence Viewer  
  AAQ11226 (Get FASTA)   NCBI Sequence Viewer  
  EDL82328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021381.4
  ENSRNOP00000084759
  ENSRNOP00000100821
GenBank Protein Q68VK5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001004090   ⟸   NM_001004090
- UniProtKB: Q498N9 (UniProtKB/Swiss-Prot),   Q68VK5 (UniProtKB/Swiss-Prot),   A6HW42 (UniProtKB/TrEMBL),   A0A8I6A0T6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021381   ⟸   ENSRNOT00000021381
RefSeq Acc Id: XP_038958654   ⟸   XM_039102726
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2L2 (UniProtKB/TrEMBL),   A0A8I6A0T6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081518   ⟸   ENSRNOT00000119237
Ensembl Acc Id: ENSRNOP00000085734   ⟸   ENSRNOT00000109413
Ensembl Acc Id: ENSRNOP00000084759   ⟸   ENSRNOT00000111381
Ensembl Acc Id: ENSRNOP00000077542   ⟸   ENSRNOT00000109275
Ensembl Acc Id: ENSRNOP00000098649   ⟸   ENSRNOT00000163282
Ensembl Acc Id: ENSRNOP00000100821   ⟸   ENSRNOT00000154137
Ensembl Acc Id: ENSRNOP00000101315   ⟸   ENSRNOT00000141716

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68VK5-F1-model_v2 AlphaFold Q68VK5 1-268 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303176 AgrOrtholog
BioCyc Gene G2FUF-51047 BioCyc
Ensembl Genes ENSRNOG00000015913 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021381.6 UniProtKB/Swiss-Prot
  ENSRNOT00000111381 ENTREZGENE
  ENSRNOT00000154137 ENTREZGENE
Gene3D-CATH 1.10.1450.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7315329 IMAGE-MGC_LOAD
InterPro Tetraspanin UniProtKB/Swiss-Prot
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot
  Tetraspanin_CS UniProtKB/Swiss-Prot
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot
KEGG Report rno:362048 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114212 IMAGE-MGC_LOAD
NCBI Gene 362048 ENTREZGENE
PANTHER PTHR19282 UniProtKB/Swiss-Prot
  TETRASPANIN-5 UniProtKB/Swiss-Prot
Pfam Tetraspanin UniProtKB/Swiss-Prot
PhenoGen Tspan5 PhenoGen
PIRSF Tetraspanin UniProtKB/Swiss-Prot
PRINTS TMFOUR UniProtKB/Swiss-Prot
PROSITE TM4_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015913 RatGTEx
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot
UniProt A0A8I5Y5Y9_RAT UniProtKB/TrEMBL
  A0A8I6A0T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G825_RAT UniProtKB/TrEMBL
  A6HW42 ENTREZGENE, UniProtKB/TrEMBL
  Q498N9 ENTREZGENE
  Q68VK5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q498N9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Tspan5  tetraspanin 5  Tm4sf9  transmembrane 4 superfamily member 9  Symbol and Name updated 1299863 APPROVED
2005-07-14 Tm4sf9  transmembrane 4 superfamily member 9      Symbol and Name status set to provisional 70820 PROVISIONAL