Rap1gds1 (Rap1 GTPase-GDP dissociation stimulator 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rap1gds1 (Rap1 GTPase-GDP dissociation stimulator 1) Rattus norvegicus
Analyze
Symbol: Rap1gds1
Name: Rap1 GTPase-GDP dissociation stimulator 1
RGD ID: 1308558
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Involved in myosin filament assembly and vascular associated smooth muscle contraction. Predicted to be located in several cellular components, including endoplasmic reticulum; extracellular space; and mitochondrion. Predicted to be active in cytosol. Orthologous to human RAP1GDS1 (Rap1 GTPase-GDP dissociation stimulator 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC310909; RAP1, GTP-GDP dissociation stimulator 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Rap1gds1Tn(sb-T2/Bart3)2.251Mcwi  
Genetic Models: F344-Rap1gds1Tn(sb-T2/Bart3)2.251Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82230,173,713 - 230,318,555 (-)NCBIGRCr8
mRatBN7.22227,500,366 - 227,645,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2235,242,317 - 235,354,991 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02233,142,077 - 233,254,755 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02228,006,680 - 228,119,360 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,258,550 - 244,370,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,258,550 - 244,370,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,787,595 - 262,899,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42236,522,381 - 236,638,692 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12236,510,838 - 236,657,572 (-)NCBI
Celera2219,646,515 - 219,757,722 (-)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Identification and characterization of the unique guanine nucleotide exchange factor, SmgGDS, in vascular smooth muscle cells. Thill R, etal., J Cell Biochem. 2008 Aug 1;104(5):1760-70.
Additional References at PubMed
PMID:16954223   PMID:19056867   PMID:20190816   PMID:23155002   PMID:24349085  


Genomics

Comparative Map Data
Rap1gds1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82230,173,713 - 230,318,555 (-)NCBIGRCr8
mRatBN7.22227,500,366 - 227,645,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2235,242,317 - 235,354,991 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02233,142,077 - 233,254,755 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02228,006,680 - 228,119,360 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,258,550 - 244,370,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,258,550 - 244,370,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,787,595 - 262,899,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42236,522,381 - 236,638,692 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12236,510,838 - 236,657,572 (-)NCBI
Celera2219,646,515 - 219,757,722 (-)NCBICelera
Cytogenetic Map2q44NCBI
RAP1GDS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38498,261,384 - 98,443,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl498,261,384 - 98,443,858 (+)EnsemblGRCh38hg38GRCh38
GRCh37499,182,535 - 99,365,009 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36499,401,550 - 99,584,035 (+)NCBINCBI36Build 36hg18NCBI36
Build 34499,539,797 - 99,720,993NCBI
Celera496,477,193 - 96,659,685 (+)NCBICelera
Cytogenetic Map4q23NCBI
HuRef494,951,921 - 95,102,454 (+)NCBIHuRef
CHM1_1499,159,390 - 99,341,882 (+)NCBICHM1_1
T2T-CHM13v2.04101,576,339 - 101,758,825 (+)NCBIT2T-CHM13v2.0
Rap1gds1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,631,662 - 138,781,163 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,631,663 - 138,780,962 (-)EnsemblGRCm39 Ensembl
GRCm383138,925,897 - 139,075,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,925,902 - 139,075,201 (-)EnsemblGRCm38mm10GRCm38
MGSCv373138,588,870 - 138,738,163 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,863,297 - 139,012,457 (-)NCBIMGSCv36mm8
Celera3145,353,564 - 145,478,788 (-)NCBICelera
Cytogenetic Map3H1NCBI
cM Map364.52NCBI
Rap1gds1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554058,573,932 - 8,709,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554058,555,117 - 8,708,604 (+)NCBIChiLan1.0ChiLan1.0
RAP1GDS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2396,336,451 - 96,509,923 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1496,614,421 - 96,787,840 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0490,671,891 - 90,846,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14101,336,286 - 101,510,517 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4101,336,286 - 101,510,517 (+)Ensemblpanpan1.1panPan2
RAP1GDS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13220,536,812 - 20,690,433 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3220,534,699 - 20,688,950 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3221,241,083 - 21,401,128 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03220,718,694 - 20,878,364 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13220,687,721 - 20,847,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03220,513,396 - 20,672,839 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03219,224,102 - 19,383,998 (-)NCBIUU_Cfam_GSD_1.0
Rap1gds1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530121,016,077 - 21,163,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936717233,696 - 380,963 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936717233,696 - 380,963 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAP1GDS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8121,866,805 - 122,082,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18121,866,803 - 122,007,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28131,053,654 - 131,110,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAP1GDS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1746,410,057 - 46,581,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl746,410,084 - 46,583,028 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603724,841,556 - 25,014,216 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rap1gds1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475726,393,106 - 26,520,785 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475726,393,116 - 26,520,344 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rap1gds1
725 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:495
Count of miRNA genes:243
Interacting mature miRNAs:277
Transcripts:ENSRNOT00000021458
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat

Markers in Region
D2Rat246  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,573,870 - 227,573,998 (+)MAPPERmRatBN7.2
Rnor_6.02244,332,017 - 244,332,144NCBIRnor6.0
Rnor_5.02262,860,837 - 262,860,964UniSTSRnor5.0
RGSC_v3.42236,595,839 - 236,595,966UniSTSRGSC3.4
RGSC_v3.12236,582,578 - 236,582,706RGD
Celera2219,719,939 - 219,720,066UniSTS
FHH x ACI Map750.0199UniSTS
Cytogenetic Map2q44UniSTS
D7Rat232  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02262,860,835 - 262,860,964NCBIRnor5.0
Rnor_5.02262,860,836 - 262,860,964NCBIRnor5.0
RGSC_v3.42236,595,838 - 236,595,966RGDRGSC3.4
RGSC_v3.42236,595,839 - 236,595,966UniSTSRGSC3.4
RGSC_v3.12236,582,578 - 236,582,706RGD
Celera2219,719,939 - 219,720,066UniSTS
FHH x ACI Map750.0199RGD
D2Rat364  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,573,883 - 227,573,998 (+)MAPPERmRatBN7.2
Rnor_6.02244,332,030 - 244,332,144NCBIRnor6.0
Rnor_5.02262,860,850 - 262,860,964UniSTSRnor5.0
RGSC_v3.42236,595,851 - 236,595,966RGDRGSC3.4
RGSC_v3.42236,595,852 - 236,595,966UniSTSRGSC3.4
RGSC_v3.12236,582,591 - 236,582,706RGD
Celera2219,719,952 - 219,720,066UniSTS
SHRSP x BN Map298.9798RGD
SHRSP x BN Map298.9798UniSTS
Cytogenetic Map2q44UniSTS
RH140023  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,500,517 - 227,500,698 (+)MAPPERmRatBN7.2
Rnor_6.02244,258,701 - 244,258,881NCBIRnor6.0
Rnor_5.02262,787,747 - 262,787,927UniSTSRnor5.0
RGSC_v3.42236,522,532 - 236,522,712UniSTSRGSC3.4
Celera2219,646,666 - 219,646,846UniSTS
RH 3.4 Map21579.6UniSTS
Cytogenetic Map2q44UniSTS
RH143543  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,501,692 - 227,501,823 (+)MAPPERmRatBN7.2
Rnor_6.02244,259,875 - 244,260,005NCBIRnor6.0
Rnor_5.02262,788,921 - 262,789,051UniSTSRnor5.0
RGSC_v3.42236,523,706 - 236,523,836UniSTSRGSC3.4
Celera2219,647,840 - 219,647,970UniSTS
RH 3.4 Map21589.0UniSTS
Cytogenetic Map2q44UniSTS
AW535078  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,561,760 - 227,561,910 (+)MAPPERmRatBN7.2
Rnor_6.02244,319,908 - 244,320,057NCBIRnor6.0
Rnor_5.02262,848,728 - 262,848,877UniSTSRnor5.0
RGSC_v3.42236,583,729 - 236,583,878UniSTSRGSC3.4
Celera2219,707,862 - 219,708,011UniSTS
RH 3.4 Map21588.8UniSTS
Cytogenetic Map2q44UniSTS
RH135334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,500,996 - 227,501,199 (+)MAPPERmRatBN7.2
Rnor_6.02244,259,180 - 244,259,382NCBIRnor6.0
Rnor_5.02262,788,226 - 262,788,428UniSTSRnor5.0
RGSC_v3.42236,523,011 - 236,523,213UniSTSRGSC3.4
Celera2219,647,145 - 219,647,347UniSTS
RH 3.4 Map21579.8UniSTS
Cytogenetic Map2q44UniSTS


Genetic Models
This gene Rap1gds1 is modified in the following models/strains:


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 40 24 19 24 6 9 74 35 34 11 6
Low 9 17 17 17 2 2 7 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000021458   ⟹   ENSRNOP00000021457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)Ensembl
Rnor_6.0 Ensembl2244,258,550 - 244,370,983 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084860   ⟹   ENSRNOP00000071795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)Ensembl
Rnor_6.0 Ensembl2244,260,069 - 244,335,165 (-)Ensembl
RefSeq Acc Id: NM_001107728   ⟹   NP_001101198
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,538 (-)NCBI
mRatBN7.22227,500,366 - 227,645,200 (-)NCBI
Rnor_6.02244,258,550 - 244,370,983 (-)NCBI
Rnor_5.02262,787,595 - 262,899,803 (-)NCBI
RGSC_v3.42236,522,381 - 236,638,692 (-)RGD
Celera2219,646,515 - 219,757,722 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415062   ⟹   NP_001401991
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,538 (-)NCBI
mRatBN7.22227,500,366 - 227,645,200 (-)NCBI
RefSeq Acc Id: XM_039102469   ⟹   XP_038958397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,554 (-)NCBI
mRatBN7.22227,500,366 - 227,645,213 (-)NCBI
RefSeq Acc Id: XM_039102470   ⟹   XP_038958398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,555 (-)NCBI
mRatBN7.22227,500,366 - 227,645,213 (-)NCBI
RefSeq Acc Id: XM_039102473   ⟹   XP_038958401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,552 (-)NCBI
mRatBN7.22227,500,366 - 227,645,212 (-)NCBI
RefSeq Acc Id: XM_039102477   ⟹   XP_038958405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,206,629 (-)NCBI
mRatBN7.22227,500,366 - 227,533,285 (-)NCBI
RefSeq Acc Id: XM_063281978   ⟹   XP_063138048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,553 (-)NCBI
RefSeq Acc Id: NP_001101198   ⟸   NM_001107728
- Peptide Label: isoform 2
- UniProtKB: A6HW43 (UniProtKB/TrEMBL),   F1M7Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071795   ⟸   ENSRNOT00000084860
RefSeq Acc Id: ENSRNOP00000021457   ⟸   ENSRNOT00000021458
RefSeq Acc Id: XP_038958397   ⟸   XM_039102469
- Peptide Label: isoform X2
- UniProtKB: A6HW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958398   ⟸   XM_039102470
- Peptide Label: isoform X1
- UniProtKB: A6HW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958401   ⟸   XM_039102473
- Peptide Label: isoform X3
- UniProtKB: A6HW43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958405   ⟸   XM_039102477
- Peptide Label: isoform X5
- UniProtKB: A6HW43 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401991   ⟸   NM_001415062
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K1D2 (UniProtKB/TrEMBL),   A6HW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138048   ⟸   XM_063281978
- Peptide Label: isoform X4
- UniProtKB: A6HW43 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1D2-F1-model_v2 AlphaFold A0A0G2K1D2 1-527 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308558 AgrOrtholog
BioCyc Gene G2FUF-51043 BioCyc
Ensembl Genes ENSRNOG00000015987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021458 ENTREZGENE
  ENSRNOT00000021458.8 UniProtKB/TrEMBL
  ENSRNOT00000084860 ENTREZGENE
  ENSRNOT00000084860.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  RAP1GDS1 UniProtKB/TrEMBL
KEGG Report rno:310909 UniProtKB/TrEMBL
NCBI Gene 310909 ENTREZGENE
PANTHER PTHR10957 UniProtKB/TrEMBL
  RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PhenoGen Rap1gds1 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015987 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K1D2 ENTREZGENE, UniProtKB/TrEMBL
  A6HW43 ENTREZGENE, UniProtKB/TrEMBL
  A6HW44 ENTREZGENE, UniProtKB/TrEMBL
  F1M7Y3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rap1gds1  RAP1, GTP-GDP dissociation stimulator 1   Rap1gds1_predicted  RAP1, GTP-GDP dissociation stimulator 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rap1gds1_predicted  RAP1, GTP-GDP dissociation stimulator 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED