Cenpe (centromere protein E) - Rat Genome Database

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Gene: Cenpe (centromere protein E) Rattus norvegicus
Analyze
Symbol: Cenpe
Name: centromere protein E
RGD ID: 1307115
Description: Predicted to enable several functions, including kinetochore binding activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in several processes, including chromosome organization; positive regulation of protein kinase activity; and regulation of chromosome segregation. Predicted to act upstream of or within regulation of protein stability and spindle assembly involved in female meiosis I. Predicted to be located in several cellular components, including kinetochore; midbody; and spindle. Predicted to be part of outer kinetochore. Predicted to be active in microtubule. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 13. Orthologous to human CENPE (centromere protein E); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centromere-associated protein E; LOC362044
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82226,310,970 - 226,369,636 (+)NCBIGRCr8
mRatBN7.22223,637,035 - 223,695,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2223,636,998 - 223,695,669 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02240,395,974 - 240,454,785 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2240,396,152 - 240,454,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02258,915,861 - 258,974,288 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42232,699,627 - 232,758,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12232,710,935 - 232,745,069 (+)NCBI
Celera2215,851,430 - 215,910,100 (+)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-carotene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroethene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diallyl trisulfide  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dieldrin  (EXP)
dimethylarsinic acid  (EXP)
dioxygen  (EXP)
diquat  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
geraniol  (ISO)
heptachlor  (EXP)
hydrazine  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
lead diacetate  (EXP)
Licochalcone B  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
mirex  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-N-nitrosourea  (ISO)
N-nitrosomorpholine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenformin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
Senkirkine  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP,ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2022189   PMID:7889940   PMID:9763420   PMID:11084331   PMID:11682612   PMID:12361599   PMID:12925705   PMID:15843429   PMID:17938250   PMID:18765791   PMID:19283064   PMID:19465021  
PMID:19946888   PMID:23891108   PMID:24748105   PMID:25395579   PMID:25743205   PMID:25908662   PMID:25918224   PMID:26321640   PMID:38456964  


Genomics

Comparative Map Data
Cenpe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82226,310,970 - 226,369,636 (+)NCBIGRCr8
mRatBN7.22223,637,035 - 223,695,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2223,636,998 - 223,695,669 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02240,395,974 - 240,454,785 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2240,396,152 - 240,454,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02258,915,861 - 258,974,288 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42232,699,627 - 232,758,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12232,710,935 - 232,745,069 (+)NCBI
Celera2215,851,430 - 215,910,100 (+)NCBICelera
Cytogenetic Map2q43NCBI
CENPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384103,105,811 - 103,198,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4103,105,349 - 103,198,445 (-)EnsemblGRCh38hg38GRCh38
GRCh374104,026,968 - 104,119,500 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364104,246,412 - 104,339,015 (-)NCBINCBI36Build 36hg18NCBI36
Build 344104,384,807 - 104,477,170NCBI
Celera4101,324,102 - 101,416,733 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef499,760,728 - 99,853,482 (-)NCBIHuRef
CHM1_14104,003,436 - 104,096,014 (-)NCBICHM1_1
T2T-CHM13v2.04106,417,702 - 106,510,204 (-)NCBIT2T-CHM13v2.0
Cenpe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393134,918,324 - 134,979,301 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3134,918,298 - 134,979,372 (+)EnsemblGRCm39 Ensembl
GRCm383135,212,563 - 135,273,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3135,212,537 - 135,273,611 (+)EnsemblGRCm38mm10GRCm38
MGSCv373134,875,527 - 134,936,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363135,150,046 - 135,210,626 (+)NCBIMGSCv36mm8
Celera3141,624,886 - 141,686,752 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map362.55NCBI
Cenpe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554965,469,239 - 5,513,574 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554965,468,759 - 5,514,915 (+)NCBIChiLan1.0ChiLan1.0
CENPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23101,187,856 - 101,281,873 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14101,474,269 - 101,568,287 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0495,562,005 - 95,654,397 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14106,185,283 - 106,277,229 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4106,185,283 - 106,277,229 (-)Ensemblpanpan1.1panPan2
CENPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13224,447,373 - 24,530,407 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3224,447,358 - 24,530,382 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3217,493,941 - 17,576,730 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03224,666,991 - 24,749,806 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3224,669,640 - 24,739,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13224,747,174 - 24,766,742 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03224,427,319 - 24,510,138 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03215,352,573 - 15,435,369 (+)NCBIUU_Cfam_GSD_1.0
Cenpe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530116,845,104 - 16,922,570 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936520188,628 - 265,733 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936520188,601 - 265,904 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8117,888,970 - 117,965,252 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18117,888,968 - 117,965,325 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28126,761,254 - 126,838,996 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CENPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1751,212,266 - 51,300,153 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603729,724,191 - 29,812,118 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248304,930,555 - 4,986,076 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248304,930,533 - 4,986,437 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cenpe
220 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:31
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000034565
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat

Markers in Region
RH138965  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map10812.6UniSTS
Cytogenetic Map2q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 91 90 59 25 59 6 217 96 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000034565   ⟹   ENSRNOP00000032795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2223,636,998 - 223,695,669 (+)Ensembl
Rnor_6.0 Ensembl2240,396,152 - 240,454,747 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102011   ⟹   ENSRNOP00000092498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2223,637,110 - 223,695,669 (+)Ensembl
RefSeq Acc Id: NM_001421086   ⟹   NP_001408015
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82226,311,057 - 226,369,636 (+)NCBI
mRatBN7.22223,637,108 - 223,695,692 (+)NCBI
RefSeq Acc Id: XM_006233351   ⟹   XP_006233413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82226,310,970 - 226,369,633 (+)NCBI
mRatBN7.22223,637,035 - 223,695,692 (+)NCBI
Rnor_6.02240,395,975 - 240,454,785 (+)NCBI
Rnor_5.02258,915,861 - 258,974,288 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103858   ⟹   XP_038959786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82226,310,970 - 226,369,633 (+)NCBI
mRatBN7.22223,637,035 - 223,695,692 (+)NCBI
RefSeq Acc Id: XM_063282221   ⟹   XP_063138291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82226,310,970 - 226,369,633 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001408015 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233413 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959786 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138291 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032795.6
  ENSRNOP00000092498.1
RefSeq Acc Id: XP_006233413   ⟸   XM_006233351
- Peptide Label: isoform X2
- UniProtKB: D3ZV60 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032795   ⟸   ENSRNOT00000034565
RefSeq Acc Id: XP_038959786   ⟸   XM_039103858
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AVR3 (UniProtKB/TrEMBL),   D3ZV60 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092498   ⟸   ENSRNOT00000102011
RefSeq Acc Id: NP_001408015   ⟸   NM_001421086
- UniProtKB: D3ZV60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138291   ⟸   XM_063282221
- Peptide Label: isoform X3
- UniProtKB: D3ZV60 (UniProtKB/TrEMBL)
Protein Domains
Kinesin motor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZV60-F1-model_v2 AlphaFold D3ZV60 1-2439 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307115 AgrOrtholog
BioCyc Gene G2FUF-51144 BioCyc
Ensembl Genes ENSRNOG00000009339 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034565.7 UniProtKB/TrEMBL
  ENSRNOT00000102011.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 362044 ENTREZGENE
PANTHER CENTROMERE PROTEIN E UniProtKB/TrEMBL
  CENTROMERE-ASSOCIATED PROTEIN E UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PhenoGen Cenpe PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009339 RatGTEx
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6AVR3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZV60 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cenpe  centromere protein E   Cenpe_predicted  centromere protein E (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cenpe_predicted  centromere protein E (predicted)      Symbol and Name status set to approved 70820 APPROVED