Odf2l (outer dense fiber of sperm tails 2-like) - Rat Genome Database

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Gene: Odf2l (outer dense fiber of sperm tails 2-like) Rattus norvegicus
Analyze
Symbol: Odf2l
Name: outer dense fiber of sperm tails 2-like
RGD ID: 1593831
Description: Predicted to be involved in negative regulation of cilium assembly. Predicted to be located in centriolar satellite. Predicted to be active in centrosome and ciliary basal body. Orthologous to human ODF2L (outer dense fiber of sperm tails 2 like); INTERACTS WITH 17beta-estradiol; bisphenol A; bromobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685425; outer dense fiber protein 2-like; RGD1308397; similar to outer dense fiber of sperm tails 2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22234,036,049 - 234,072,751 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2234,033,652 - 234,072,747 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2241,824,994 - 241,861,711 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02239,718,271 - 239,755,983 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02234,582,620 - 234,619,340 (+)NCBIRnor_WKY
Rnor_6.02250,995,018 - 251,032,908 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,995,517 - 251,048,566 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02269,522,263 - 269,560,140 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,156,191 - 243,192,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2226,024,231 - 226,060,686 (+)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17485331   PMID:21399614   PMID:28775150   PMID:31904090  


Genomics

Comparative Map Data
Odf2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22234,036,049 - 234,072,751 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2234,033,652 - 234,072,747 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2241,824,994 - 241,861,711 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02239,718,271 - 239,755,983 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02234,582,620 - 234,619,340 (+)NCBIRnor_WKY
Rnor_6.02250,995,018 - 251,032,908 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,995,517 - 251,048,566 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02269,522,263 - 269,560,140 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,156,191 - 243,192,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2226,024,231 - 226,060,686 (+)NCBICelera
Cytogenetic Map2q44NCBI
ODF2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38186,346,837 - 86,396,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl186,346,824 - 86,396,342 (-)EnsemblGRCh38hg38GRCh38
GRCh37186,812,520 - 86,862,006 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36186,587,008 - 86,634,591 (-)NCBINCBI36Build 36hg18NCBI36
Celera185,056,509 - 85,106,021 (-)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef184,923,290 - 84,973,009 (-)NCBIHuRef
CHM1_1186,927,376 - 86,976,883 (-)NCBICHM1_1
T2T-CHM13v2.0186,186,869 - 86,236,344 (-)NCBIT2T-CHM13v2.0
Odf2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393144,824,330 - 144,859,676 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3144,824,349 - 144,859,676 (+)EnsemblGRCm39 Ensembl
GRCm383145,118,569 - 145,153,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3145,118,588 - 145,153,915 (+)EnsemblGRCm38mm10GRCm38
MGSCv373144,781,553 - 144,816,879 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363145,055,986 - 145,091,273 (+)NCBIMGSCv36mm8
Celera3151,561,362 - 151,596,730 (+)NCBICelera
Cytogenetic Map3H2NCBI
cM Map369.36NCBI
Odf2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554237,780,176 - 7,821,938 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554237,777,791 - 7,819,095 (+)NCBIChiLan1.0ChiLan1.0
ODF2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1187,731,664 - 87,780,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,733,578 - 87,771,501 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01118,879,250 - 118,927,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ODF2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1661,637,855 - 61,779,337 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl661,726,730 - 61,757,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0662,118,171 - 62,298,108 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl662,262,532 - 62,297,414 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1661,651,252 - 61,830,138 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0661,614,431 - 61,793,844 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0662,235,135 - 62,299,897 (+)NCBIUU_Cfam_GSD_1.0
Odf2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505896,840,116 - 96,877,846 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936865252,859 - 290,657 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936865252,865 - 290,595 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODF2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4129,721,291 - 129,758,495 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14129,396,051 - 129,805,612 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24141,913,970 - 142,322,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ODF2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12047,033,643 - 47,079,603 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2047,033,452 - 47,079,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603370,731,219 - 70,778,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Odf2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474211,245,390 - 11,280,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474211,241,962 - 11,286,756 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Odf2l
156 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:31
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000018905
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 26 10 16 10 8 8 51 20 33 8 8
Low 3 33 31 31 3 31 2 23 15 8 3
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB767200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018905   ⟹   ENSRNOP00000018905
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2234,036,049 - 234,072,747 (+)Ensembl
Rnor_6.0 Ensembl2250,995,517 - 251,032,894 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080600   ⟹   ENSRNOP00000074178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2234,036,049 - 234,072,747 (+)Ensembl
Rnor_6.0 Ensembl2251,002,213 - 251,048,566 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106125   ⟹   ENSRNOP00000083735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2234,033,652 - 234,072,747 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119248   ⟹   ENSRNOP00000084766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2234,036,339 - 234,072,747 (+)Ensembl
RefSeq Acc Id: NM_001134708   ⟹   NP_001128180
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,049 - 234,072,751 (+)NCBI
Rnor_6.02250,995,517 - 251,032,896 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
RGSC_v3.42243,156,191 - 243,192,892 (+)RGD
Celera2226,024,231 - 226,060,686 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233439   ⟹   XP_006233501
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,246 - 234,072,735 (+)NCBI
Rnor_6.02250,995,701 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233440   ⟹   XP_006233502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,246 - 234,072,735 (+)NCBI
Rnor_6.02250,995,701 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233441   ⟹   XP_006233503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,082 - 234,072,735 (+)NCBI
Rnor_6.02250,995,018 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233443   ⟹   XP_006233505
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,076 - 234,072,735 (+)NCBI
Rnor_6.02250,995,018 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233445   ⟹   XP_006233507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,057 - 234,072,735 (+)NCBI
Rnor_6.02250,995,019 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233446   ⟹   XP_006233508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,245 - 234,072,735 (+)NCBI
Rnor_6.02250,995,701 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233447   ⟹   XP_006233509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,248 - 234,072,735 (+)NCBI
Rnor_6.02250,995,703 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233449   ⟹   XP_006233511
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,249 - 234,072,735 (+)NCBI
Rnor_6.02250,995,704 - 251,032,908 (+)NCBI
Rnor_5.02269,522,263 - 269,560,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591110   ⟹   XP_017446599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,246 - 234,072,735 (+)NCBI
Rnor_6.02250,995,701 - 251,032,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103138   ⟹   XP_038959066
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,248 - 234,072,735 (+)NCBI
RefSeq Acc Id: XM_039103139   ⟹   XP_038959067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,239 - 234,067,759 (+)NCBI
RefSeq Acc Id: XR_005500369
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22234,036,055 - 234,072,751 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001128180   ⟸   NM_001134708
- UniProtKB: B2RYL6 (UniProtKB/TrEMBL),   G3V7S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233505   ⟸   XM_006233443
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006233503   ⟸   XM_006233441
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233507   ⟸   XM_006233445
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K7F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233502   ⟸   XM_006233440
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233501   ⟸   XM_006233439
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233508   ⟸   XM_006233446
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006233509   ⟸   XM_006233447
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZXN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233511   ⟸   XM_006233449
- Peptide Label: isoform X6
- UniProtKB: G3V7S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446599   ⟸   XM_017591110
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000074178   ⟸   ENSRNOT00000080600
RefSeq Acc Id: ENSRNOP00000018905   ⟸   ENSRNOT00000018905
RefSeq Acc Id: XP_038959067   ⟸   XM_039103139
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038959066   ⟸   XM_039103138
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000083735   ⟸   ENSRNOT00000106125
RefSeq Acc Id: ENSRNOP00000084766   ⟸   ENSRNOT00000119248

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K7F1-F1-model_v2 AlphaFold A0A0G2K7F1 1-642 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691806
Promoter ID:EPDNEW_R2331
Type:single initiation site
Name:Odf2l_1
Description:outer dense fiber of sperm tails 2-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02250,995,472 - 250,995,532EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593831 AgrOrtholog
BioCyc Gene G2FUF-50930 BioCyc
Ensembl Genes ENSRNOG00000014059 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000018905 ENTREZGENE
  ENSRNOP00000018905.3 UniProtKB/TrEMBL
  ENSRNOP00000074178 ENTREZGENE
  ENSRNOP00000074178.1 UniProtKB/TrEMBL
  ENSRNOP00000083735 ENTREZGENE
  ENSRNOP00000083735.1 UniProtKB/TrEMBL
  ENSRNOP00000084766 ENTREZGENE
  ENSRNOP00000084766.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018905 ENTREZGENE
  ENSRNOT00000018905.6 UniProtKB/TrEMBL
  ENSRNOT00000080600 ENTREZGENE
  ENSRNOT00000080600.2 UniProtKB/TrEMBL
  ENSRNOT00000106125 ENTREZGENE
  ENSRNOT00000106125.1 UniProtKB/TrEMBL
  ENSRNOT00000119248 ENTREZGENE
  ENSRNOT00000119248.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8370140 IMAGE-MGC_LOAD
InterPro Odf2-like UniProtKB/TrEMBL
  Odf2-rel UniProtKB/TrEMBL
KEGG Report rno:685425 UniProtKB/TrEMBL
MGC_CLONE MGC:188703 IMAGE-MGC_LOAD
NCBI Gene 685425 ENTREZGENE
PANTHER PTHR23162 UniProtKB/TrEMBL
  PTHR23162:SF7 UniProtKB/TrEMBL
PhenoGen Odf2l PhenoGen
UniProt A0A0G2K7F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GC60_RAT UniProtKB/TrEMBL
  B2RYL6 ENTREZGENE, UniProtKB/TrEMBL
  G3V7S9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Odf2l  outer dense fiber of sperm tails 2-like  LOC685425  similar to outer dense fiber of sperm tails 2-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685425  similar to outer dense fiber of sperm tails 2-like  LOC687582  similar to outer dense fiber of sperm tails 2-like  Data Merged 1643240 APPROVED
2006-11-20 LOC685425  similar to outer dense fiber of sperm tails 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687582  similar to outer dense fiber of sperm tails 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL