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Gene: Rpf1 (ribosome production factor 1 homolog) Rattus norvegicus
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Symbol: Rpf1
Name: ribosome production factor 1 homolog
RGD ID: 1559755
Description: Predicted to have RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to localize to nucleolus and preribosome, large subunit precursor. Orthologous to human RPF1 (ribosome production factor 1 homolog); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: brix domain containing 5; brix domain-containing protein 5; Bxdc5; ribosome biogenesis protein RPF1; ribosome production factor 1; ribosome production factor 1 homolog (S. cerevisiae); RNA processing factor 1
Orthologs:
Homo sapiens (human) : RPF1 (ribosome production factor 1 homolog)  HGNC  Alliance
Mus musculus (house mouse) : Rpf1 (ribosome production factor 1 homolog)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rpf1 (ribosome production factor 1 homolog)
Pan paniscus (bonobo/pygmy chimpanzee) : RPF1 (ribosome production factor 1 homolog)
Canis lupus familiaris (dog) : RPF1 (ribosome production factor 1 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rpf1 (ribosome production factor 1 homolog)
Sus scrofa (pig) : RPF1 (ribosome production factor 1 homolog)
Chlorocebus sabaeus (African green monkey) : RPF1 (ribosome production factor 1 homolog)
Heterocephalus glaber (naked mole-rat) : Rpf1 (ribosome production factor 1 homolog)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02252,368,316 - 252,382,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,368,329 - 252,382,955 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02270,895,281 - 270,909,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42244,711,216 - 244,725,738 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2227,382,731 - 227,397,253 (-)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rpf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1559755
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.