RPF1 (ribosome production factor 1 homolog) - Rat Genome Database

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Gene: RPF1 (ribosome production factor 1 homolog) Pan paniscus
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Symbol: RPF1
Name: ribosome production factor 1 homolog
RGD ID: 11767993
Description: ENCODES a protein that exhibits RNA binding (inferred); rRNA binding (inferred); rRNA primary transcript binding (inferred); INVOLVED IN maturation of 5.8S rRNA (inferred); maturation of LSU-rRNA (inferred); ribosome biogenesis (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleolus (inferred); preribosome, large subunit precursor (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribosome production factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21142,444,845 - 142,465,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11141,599,275 - 141,619,887 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,027,638 - 117,046,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1185,888,476 - 85,907,539 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl185,888,496 - 85,906,883 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RPF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21142,444,845 - 142,465,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11141,599,275 - 141,619,887 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,027,638 - 117,046,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1185,888,476 - 85,907,539 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl185,888,496 - 85,906,883 (+)Ensemblpanpan1.1panPan2
RPF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38184,479,266 - 84,498,352 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl184,479,259 - 84,498,352 (+)EnsemblGRCh38hg38GRCh38
GRCh37184,944,949 - 84,964,035 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36184,717,508 - 84,736,621 (+)NCBINCBI36Build 36hg18NCBI36
Celera183,189,094 - 83,208,206 (+)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef183,055,328 - 83,074,244 (+)NCBIHuRef
CHM1_1185,059,752 - 85,078,863 (+)NCBICHM1_1
T2T-CHM13v2.0184,319,649 - 84,338,734 (+)NCBIT2T-CHM13v2.0
Rpf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393146,212,099 - 146,227,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3146,211,711 - 146,227,184 (-)EnsemblGRCm39 Ensembl
GRCm383146,506,344 - 146,521,423 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3146,505,956 - 146,521,429 (-)EnsemblGRCm38mm10GRCm38
MGSCv373146,169,308 - 146,184,387 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363146,443,804 - 146,458,804 (-)NCBIMGSCv36mm8
Celera3152,956,530 - 152,971,609 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map371.57NCBI
Rpf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82238,063,294 - 238,077,817 (-)NCBIGRCr8
mRatBN7.22235,403,020 - 235,417,546 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,403,021 - 235,417,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2243,198,763 - 243,213,280 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02241,090,167 - 241,104,706 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,956,400 - 235,970,917 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02252,368,316 - 252,382,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,368,329 - 252,382,955 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02270,895,281 - 270,909,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42244,711,216 - 244,725,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2227,382,731 - 227,397,253 (-)NCBICelera
Cytogenetic Map2q44NCBI
Rpf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554239,394,780 - 9,412,105 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554239,394,780 - 9,412,001 (-)NCBIChiLan1.0ChiLan1.0
RPF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1663,399,102 - 63,419,407 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl663,399,102 - 63,419,373 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha666,046,093 - 66,067,574 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0663,937,676 - 63,959,213 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl663,937,682 - 63,959,199 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1663,465,720 - 63,487,197 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0663,434,448 - 63,455,926 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0663,940,417 - 63,961,931 (-)NCBIUU_Cfam_GSD_1.0
Rpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505895,180,924 - 95,195,592 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366081,110,150 - 1,125,127 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366081,110,100 - 1,125,097 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6129,256,042 - 129,271,043 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16129,256,040 - 129,271,038 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12048,855,166 - 48,877,132 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603368,890,876 - 68,909,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474212,969,808 - 12,994,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474212,972,948 - 12,994,605 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003805279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000054202   ⟹   ENSPPAP00000031338
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl185,888,496 - 85,906,883 (+)Ensembl
RefSeq Acc Id: XM_003805279   ⟹   XP_003805327
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,444,845 - 142,465,459 (-)NCBI
NHGRI_mPanPan11141,599,275 - 141,619,887 (-)NCBI
Mhudiblu_PPA_v01117,027,638 - 117,046,940 (+)NCBI
PanPan1.1185,888,476 - 85,907,539 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003805327 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031338
  ENSPPAP00000031338.1
RefSeq Acc Id: XP_003805327   ⟸   XM_003805279
- UniProtKB: A0A2R9BSD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000031338   ⟸   ENSPPAT00000054202
Protein Domains
Brix


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038610 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054202.1 UniProtKB/TrEMBL
Gene3D-CATH Probable brix-domain ribosomal biogenesis protein UniProtKB/TrEMBL
InterPro Brix UniProtKB/TrEMBL
  IMP4/RPF1 UniProtKB/TrEMBL
KEGG Report pps:100972282 UniProtKB/TrEMBL
NCBI Gene RPF1 ENTREZGENE
PANTHER PTHR22734 UniProtKB/TrEMBL
  RIBOSOME PRODUCTION FACTOR 1 UniProtKB/TrEMBL
Pfam Brix UniProtKB/TrEMBL
PROSITE BRIX UniProtKB/TrEMBL
SMART Brix UniProtKB/TrEMBL
Superfamily-SCOP Class II aaRS ABD-related UniProtKB/TrEMBL
UniProt A0A2R9BSD1 ENTREZGENE, UniProtKB/TrEMBL