Negr1 (neuronal growth regulator 1) - Rat Genome Database

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Gene: Negr1 (neuronal growth regulator 1) Rattus norvegicus
Analyze
Symbol: Negr1
Name: neuronal growth regulator 1
RGD ID: 708416
Description: Involved in regulation of synapse assembly. Located in dendrite and neuronal cell body. Orthologous to human NEGR1 (neuronal growth regulator 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: kilon; kindred of IgLON; LOC59318
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82248,283,164 - 249,015,538 (+)NCBIGRCr8
mRatBN7.22245,624,460 - 246,359,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2245,624,435 - 246,356,730 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2253,337,355 - 254,073,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02251,231,168 - 251,967,387 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02246,210,200 - 246,948,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02262,914,240 - 263,650,441 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2262,914,327 - 263,650,441 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02281,586,109 - 282,319,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42254,666,633 - 255,426,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12254,681,239 - 255,440,985 (+)NCBI
Celera2237,443,428 - 238,169,037 (+)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. IG-molecule Kilon shows differential expression pattern from LAMP in the developing and adult rat hippocampus. Bräuer AU, etal., Hippocampus. 2000;10(6):632-44. doi: 10.1002/1098-1063(2000)10:6<632::AID-HIPO1001>3.0.CO;2-6.
2. Characterization of a novel rat brain glycosylphosphatidylinositol-anchored protein (Kilon), a member of the IgLON cell adhesion molecule family. Funatsu N, etal., J Biol Chem 1999 Mar 19;274(12):8224-30.
3. IgLON cell adhesion molecule Kilon is a crucial modulator for synapse number in hippocampal neurons. Hashimoto T, etal., Brain Res. 2008 Aug 11;1224:1-11. doi: 10.1016/j.brainres.2008.05.069. Epub 2008 Jun 5.
4. Proteomic Screen of Brain Glycoproteome Reveals Prion Specific Marker of Pathogenesis. Lamoureux L, etal., Proteomics. 2018 Jan;18(1). doi: 10.1002/pmic.201700296.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:21700703   PMID:22627920   PMID:22844493   PMID:23376485  


Genomics

Comparative Map Data
Negr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82248,283,164 - 249,015,538 (+)NCBIGRCr8
mRatBN7.22245,624,460 - 246,359,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2245,624,435 - 246,356,730 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2253,337,355 - 254,073,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02251,231,168 - 251,967,387 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02246,210,200 - 246,948,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02262,914,240 - 263,650,441 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2262,914,327 - 263,650,441 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02281,586,109 - 282,319,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42254,666,633 - 255,426,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12254,681,239 - 255,440,985 (+)NCBI
Celera2237,443,428 - 238,169,037 (+)NCBICelera
Cytogenetic Map2q45NCBI
NEGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38171,395,943 - 72,282,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl171,395,943 - 72,282,539 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,861,626 - 72,748,222 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,641,213 - 72,520,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 34171,583,838 - 72,460,205NCBI
Celera170,157,555 - 71,037,580 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef169,978,580 - 70,860,342 (-)NCBIHuRef
CHM1_1171,983,975 - 72,863,635 (-)NCBICHM1_1
T2T-CHM13v2.0171,273,677 - 72,161,473 (-)NCBIT2T-CHM13v2.0
Negr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393156,266,082 - 157,022,101 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3156,267,431 - 157,022,082 (+)EnsemblGRCm39 Ensembl
GRCm383156,561,790 - 157,316,464 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3156,561,794 - 157,316,445 (+)EnsemblGRCm38mm10GRCm38
MGSCv373156,224,758 - 156,979,411 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363156,497,087 - 157,251,740 (+)NCBIMGSCv36mm8
Celera3163,010,595 - 163,778,314 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map380.6NCBI
Negr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542320,011,615 - 20,813,879 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542320,011,488 - 20,816,686 (+)NCBIChiLan1.0ChiLan1.0
NEGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21154,602,246 - 155,488,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11153,764,106 - 154,647,525 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0170,628,093 - 71,503,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1172,609,803 - 73,484,442 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl172,613,516 - 73,484,240 (-)Ensemblpanpan1.1panPan2
NEGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1673,823,686 - 74,637,906 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl673,823,826 - 74,634,764 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha676,497,030 - 77,310,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0674,414,385 - 75,225,455 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl674,414,525 - 75,225,455 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1673,963,931 - 74,777,540 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0673,862,655 - 74,675,458 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0674,358,166 - 75,172,342 (+)NCBIUU_Cfam_GSD_1.0
Negr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505883,586,504 - 84,376,744 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936591113,013 - 899,271 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936591112,864 - 903,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6140,780,723 - 141,647,820 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16140,780,397 - 141,652,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26130,680,413 - 130,791,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12060,848,712 - 61,731,563 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603355,940,383 - 56,522,362 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Negr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474224,054,701 - 24,877,957 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474224,054,340 - 24,881,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Negr1
5044 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:65
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000029312
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat

Markers in Region
D2Rat70  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22245,889,653 - 245,889,826 (+)MAPPERmRatBN7.2
Rnor_6.02263,179,018 - 263,179,188NCBIRnor6.0
Rnor_5.02281,850,301 - 281,850,471UniSTSRnor5.0
RGSC_v3.42254,933,192 - 254,933,362UniSTSRGSC3.4
RGSC_v3.42254,933,191 - 254,933,362RGDRGSC3.4
RGSC_v3.12254,947,787 - 254,948,141RGD
Celera2237,707,980 - 237,708,150UniSTS
RH 3.4 Map21633.1RGD
RH 3.4 Map21633.1UniSTS
RH 2.0 Map21203.5RGD
SHRSP x BN Map2112.4798RGD
FHH x ACI Map2113.0199RGD
Cytogenetic Map2q45UniSTS
D2Got393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22246,229,994 - 246,230,118 (+)MAPPERmRatBN7.2
Rnor_6.02263,518,807 - 263,518,932NCBIRnor6.0
Rnor_5.02282,187,965 - 282,188,090UniSTSRnor5.0
RGSC_v3.42255,287,754 - 255,287,879UniSTSRGSC3.4
Celera2238,047,903 - 238,048,029UniSTS
Cytogenetic Map2q45UniSTS
D2Got420  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22245,650,141 - 245,650,414 (+)MAPPERmRatBN7.2
Rnor_6.02262,939,797 - 262,940,069NCBIRnor6.0
Rnor_5.02281,611,213 - 281,611,485UniSTSRnor5.0
RGSC_v3.42254,692,741 - 254,693,013UniSTSRGSC3.4
Celera2237,468,995 - 237,469,267UniSTS
Cytogenetic Map2q45UniSTS
47.MMHAP35FRH11.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22245,624,799 - 245,624,965 (+)MAPPERmRatBN7.2
Rnor_6.02262,914,447 - 262,914,612NCBIRnor6.0
Rnor_5.02281,586,316 - 281,586,481UniSTSRnor5.0
RGSC_v3.42254,666,840 - 254,667,005UniSTSRGSC3.4
Celera2237,443,635 - 237,443,800UniSTS
Cytogenetic Map2q45UniSTS
AU048123  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22245,728,032 - 245,728,291 (+)MAPPERmRatBN7.2
Rnor_6.02263,017,942 - 263,018,200NCBIRnor6.0
Rnor_5.02281,689,225 - 281,689,483UniSTSRnor5.0
RGSC_v3.42254,770,310 - 254,770,568UniSTSRGSC3.4
Celera2237,546,860 - 237,547,118UniSTS
Cytogenetic Map2q45UniSTS
RH138127  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22245,935,228 - 245,935,366 (+)MAPPERmRatBN7.2
Rnor_6.02263,224,475 - 263,224,612NCBIRnor6.0
Rnor_5.02281,895,758 - 281,895,895UniSTSRnor5.0
RGSC_v3.42254,978,741 - 254,978,878UniSTSRGSC3.4
Celera2237,753,543 - 237,753,680UniSTS
RH 3.4 Map21635.6UniSTS
Cytogenetic Map2q45UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 2 64 4 5
Low 1 24 54 39 18 39 8 10 10 29 32 10 8
Below cutoff 2 19 1 1 2 3 1

Sequence


RefSeq Acc Id: ENSRNOT00000029312   ⟹   ENSRNOP00000035271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2245,624,435 - 246,263,845 (+)Ensembl
Rnor_6.0 Ensembl2262,914,327 - 263,649,764 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089396   ⟹   ENSRNOP00000072152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2245,624,435 - 246,356,730 (+)Ensembl
Rnor_6.0 Ensembl2263,212,051 - 263,650,441 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101457   ⟹   ENSRNOP00000094089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2245,624,435 - 246,322,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116115   ⟹   ENSRNOP00000094558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2245,624,435 - 246,211,790 (+)Ensembl
RefSeq Acc Id: NM_021682   ⟹   NP_067714
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82248,283,476 - 249,015,538 (+)NCBI
mRatBN7.22245,624,593 - 246,356,730 (+)NCBI
Rnor_6.02262,914,240 - 263,650,441 (+)NCBI
Rnor_5.02281,586,109 - 282,319,649 (+)NCBI
RGSC_v3.42254,666,633 - 255,426,378 (+)RGD
Celera2237,443,428 - 238,169,037 (+)RGD
Sequence:
RefSeq Acc Id: XM_039103007   ⟹   XP_038958935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82248,283,167 - 248,870,715 (+)NCBI
mRatBN7.22245,624,460 - 246,230,112 (+)NCBI
RefSeq Acc Id: XM_063282428   ⟹   XP_063138498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82248,283,164 - 248,926,288 (+)NCBI
RefSeq Acc Id: NP_067714   ⟸   NM_021682
- Peptide Label: precursor
- UniProtKB: Q9Z0J8 (UniProtKB/Swiss-Prot),   A6HWR8 (UniProtKB/TrEMBL),   A6HWR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072152   ⟸   ENSRNOT00000089396
RefSeq Acc Id: ENSRNOP00000035271   ⟸   ENSRNOT00000029312
RefSeq Acc Id: XP_038958935   ⟸   XM_039103007
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJV3 (UniProtKB/TrEMBL),   A6HWS0 (UniProtKB/TrEMBL),   A6HWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094089   ⟸   ENSRNOT00000101457
RefSeq Acc Id: ENSRNOP00000094558   ⟸   ENSRNOT00000116115
RefSeq Acc Id: XP_063138498   ⟸   XM_063282428
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0J8-F1-model_v2 AlphaFold Q9Z0J8 1-348 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708416 AgrOrtholog
BioCyc Gene G2FUF-50722 BioCyc
Ensembl Genes ENSRNOG00000021410 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055028721 UniProtKB/Swiss-Prot
  ENSRNOG00060001794 UniProtKB/Swiss-Prot
  ENSRNOG00065002582 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029312.6 UniProtKB/TrEMBL
  ENSRNOT00000089396 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000089396.2 UniProtKB/Swiss-Prot
  ENSRNOT00000101457.1 UniProtKB/TrEMBL
  ENSRNOT00000116115.1 UniProtKB/TrEMBL
  ENSRNOT00055049730 UniProtKB/Swiss-Prot
  ENSRNOT00060002775 UniProtKB/Swiss-Prot
  ENSRNOT00065003425 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:59318 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 59318 ENTREZGENE
PANTHER CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DPR-INTERACTING PROTEIN KAPPA, ISOFORM A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Negr1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021410 RatGTEx
  ENSRNOG00055028721 RatGTEx
  ENSRNOG00060001794 RatGTEx
  ENSRNOG00065002582 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K293_RAT UniProtKB/TrEMBL
  A0A8I6AH09_RAT UniProtKB/TrEMBL
  A0A8I6AJV3 ENTREZGENE, UniProtKB/TrEMBL
  A6HWR8 ENTREZGENE, UniProtKB/TrEMBL
  A6HWR9 ENTREZGENE, UniProtKB/TrEMBL
  A6HWS0 ENTREZGENE, UniProtKB/TrEMBL
  D4A2V0_RAT UniProtKB/TrEMBL
  NEGR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Negr1  neuronal growth regulator 1  LOC59318  kilon  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization glycosylphosphatidylinositol (GPI)-anchored to the membrane 1299429
gene_expression expression is restricted to brain 1299429