Negr1 (neuronal growth regulator 1) - Rat Genome Database

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Gene: Negr1 (neuronal growth regulator 1) Ictidomys tridecemlineatus
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Symbol: Negr1
Name: neuronal growth regulator 1
RGD ID: 12553468
Description: INVOLVED IN brain development (ortholog); cell-cell adhesion (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); obesity (ortholog); scrapie (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuronal growth regulator 1, transcript variant X1; neuronal growth regulator 1, transcript variant X2; neuronal growth regulator 1, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505883,586,504 - 84,376,744 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936591113,013 - 899,271 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936591112,864 - 903,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Negr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505883,586,504 - 84,376,744 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936591113,013 - 899,271 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936591112,864 - 903,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38171,395,943 - 72,282,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl171,395,943 - 72,282,539 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,861,626 - 72,748,222 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,641,213 - 72,520,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 34171,583,838 - 72,460,205NCBI
Celera170,157,555 - 71,037,580 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef169,978,580 - 70,860,342 (-)NCBIHuRef
CHM1_1171,983,975 - 72,863,635 (-)NCBICHM1_1
T2T-CHM13v2.0171,273,677 - 72,161,473 (-)NCBIT2T-CHM13v2.0
Negr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393156,266,082 - 157,022,101 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3156,267,431 - 157,022,082 (+)EnsemblGRCm39 Ensembl
GRCm383156,561,790 - 157,316,464 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3156,561,794 - 157,316,445 (+)EnsemblGRCm38mm10GRCm38
MGSCv373156,224,758 - 156,979,411 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363156,497,087 - 157,251,740 (+)NCBIMGSCv36mm8
Celera3163,010,595 - 163,778,314 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map380.6NCBI
Negr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82248,283,164 - 249,015,538 (+)NCBIGRCr8
mRatBN7.22245,624,460 - 246,359,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2245,624,435 - 246,356,730 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2253,337,355 - 254,073,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02251,231,168 - 251,967,387 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02246,210,200 - 246,948,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02262,914,240 - 263,650,441 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2262,914,327 - 263,650,441 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02281,586,109 - 282,319,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42254,666,633 - 255,426,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12254,681,239 - 255,440,985 (+)NCBI
Celera2237,443,428 - 238,169,037 (+)NCBICelera
Cytogenetic Map2q45NCBI
Negr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542320,011,615 - 20,813,879 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542320,011,488 - 20,816,686 (+)NCBIChiLan1.0ChiLan1.0
NEGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21154,602,246 - 155,488,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11153,764,106 - 154,647,525 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0170,628,093 - 71,503,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1172,609,803 - 73,484,442 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl172,613,516 - 73,484,240 (-)Ensemblpanpan1.1panPan2
NEGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1673,823,686 - 74,637,906 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl673,823,826 - 74,634,764 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha676,497,030 - 77,310,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0674,414,385 - 75,225,455 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl674,414,525 - 75,225,455 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1673,963,931 - 74,777,540 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0673,862,655 - 74,675,458 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0674,358,166 - 75,172,342 (+)NCBIUU_Cfam_GSD_1.0
NEGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6140,780,723 - 141,647,820 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16140,780,397 - 141,652,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26130,680,413 - 130,791,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12060,848,712 - 61,731,563 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603355,940,383 - 56,522,362 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Negr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474224,054,701 - 24,877,957 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474224,054,340 - 24,881,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000010905   ⟹   ENSSTOP00000009780
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936591113,013 - 737,366 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000040681   ⟹   ENSSTOP00000025884
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936591113,013 - 899,271 (+)Ensembl
RefSeq Acc Id: XM_005332336   ⟹   XP_005332393
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505883,586,504 - 84,376,738 (-)NCBI
SpeTri2.0NW_004936591112,864 - 903,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731059   ⟹   XP_021586734
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505883,586,504 - 84,376,740 (-)NCBI
SpeTri2.0NW_004936591112,864 - 903,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288863   ⟹   XP_040144797
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505883,586,504 - 84,376,744 (-)NCBI
RefSeq Acc Id: XM_040288864   ⟹   XP_040144798
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505883,586,504 - 84,376,741 (-)NCBI
RefSeq Acc Id: XP_005332393   ⟸   XM_005332336
- Peptide Label: isoform X4
- UniProtKB: A0A287CX97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586734   ⟸   XM_021731059
- Peptide Label: isoform X2
- UniProtKB: A0A287CX97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144797   ⟸   XM_040288863
- Peptide Label: isoform X1
- UniProtKB: A0A287CX97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144798   ⟸   XM_040288864
- Peptide Label: isoform X3
- UniProtKB: A0A287CX97 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000025884   ⟸   ENSSTOT00000040681
Ensembl Acc Id: ENSSTOP00000009780   ⟸   ENSSTOT00000010905
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010905 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010905.3 UniProtKB/TrEMBL
  ENSSTOT00000040681.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IgLON_domain UniProtKB/TrEMBL
NCBI Gene Negr1 ENTREZGENE
PANTHER IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/TrEMBL
  NEUROTRIMIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287CX97 ENTREZGENE, UniProtKB/TrEMBL
  I3MGB9_ICTTR UniProtKB/TrEMBL