Negr1 (neuronal growth regulator 1) - Rat Genome Database

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Gene: Negr1 (neuronal growth regulator 1) Mus musculus
Analyze
Symbol: Negr1
Name: neuronal growth regulator 1
RGD ID: 1332157
MGI Page MGI
Description: Predicted to enable transmembrane transporter binding activity. Acts upstream of or within several processes, including cholesterol homeostasis; lipid droplet formation; and nervous system development. Located in plasma membrane. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human NEGR1 (neuronal growth regulator 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5330422G01Rik; KILON; kindred of IgLON; mKIAA3001; N; neurotractin; Ntra
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393156,266,082 - 157,022,101 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3156,267,431 - 157,022,082 (+)EnsemblGRCm39 Ensembl
GRCm383156,561,790 - 157,316,464 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3156,561,794 - 157,316,445 (+)EnsemblGRCm38mm10GRCm38
MGSCv373156,224,758 - 156,979,411 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363156,497,087 - 157,251,740 (+)NCBIMGSCv36mm8
Celera3163,010,595 - 163,778,314 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map380.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic Screen of Brain Glycoproteome Reveals Prion Specific Marker of Pathogenesis. Lamoureux L, etal., Proteomics. 2018 Jan;18(1). doi: 10.1002/pmic.201700296.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10330412   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12693553   PMID:14610273   PMID:14681479   PMID:15142957   PMID:15328020  
PMID:15457338   PMID:15946856   PMID:16141072   PMID:16141073   PMID:16602821   PMID:19521566   PMID:21677750   PMID:22844493   PMID:24194600   PMID:24382801   PMID:24496616   PMID:25826454  
PMID:26723899   PMID:26839965   PMID:27626380   PMID:27940359   PMID:29479305   PMID:29794059   PMID:30013108   PMID:30651602   PMID:30932003   PMID:31086253   PMID:31944180   PMID:32325033  
PMID:32581705   PMID:34321999   PMID:34599206   PMID:35526561   PMID:37142655   PMID:37216094   PMID:38355793   PMID:39289460   PMID:39349721  


Genomics

Comparative Map Data
Negr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393156,266,082 - 157,022,101 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3156,267,431 - 157,022,082 (+)EnsemblGRCm39 Ensembl
GRCm383156,561,790 - 157,316,464 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3156,561,794 - 157,316,445 (+)EnsemblGRCm38mm10GRCm38
MGSCv373156,224,758 - 156,979,411 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363156,497,087 - 157,251,740 (+)NCBIMGSCv36mm8
Celera3163,010,595 - 163,778,314 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map380.6NCBI
NEGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38171,395,943 - 72,282,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl171,395,943 - 72,282,539 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,861,626 - 72,748,222 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,641,213 - 72,520,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 34171,583,838 - 72,460,205NCBI
Celera170,157,555 - 71,037,580 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef169,978,580 - 70,860,342 (-)NCBIHuRef
CHM1_1171,983,975 - 72,863,635 (-)NCBICHM1_1
T2T-CHM13v2.0171,273,677 - 72,161,473 (-)NCBIT2T-CHM13v2.0
Negr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82248,283,164 - 249,015,538 (+)NCBIGRCr8
mRatBN7.22245,624,460 - 246,359,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2245,624,435 - 246,356,730 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2253,337,355 - 254,073,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02251,231,168 - 251,967,387 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02246,210,200 - 246,948,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02262,914,240 - 263,650,441 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2262,914,327 - 263,650,441 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02281,586,109 - 282,319,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42254,666,633 - 255,426,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12254,681,239 - 255,440,985 (+)NCBI
Celera2237,443,428 - 238,169,037 (+)NCBICelera
Cytogenetic Map2q45NCBI
Negr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542320,011,615 - 20,813,879 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542320,011,488 - 20,816,686 (+)NCBIChiLan1.0ChiLan1.0
NEGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21154,602,246 - 155,488,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11153,764,106 - 154,647,525 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0170,628,093 - 71,503,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1172,609,803 - 73,484,442 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl172,613,516 - 73,484,240 (-)Ensemblpanpan1.1panPan2
NEGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1673,823,686 - 74,637,906 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl673,823,826 - 74,634,764 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha676,497,030 - 77,310,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0674,414,385 - 75,225,455 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl674,414,525 - 75,225,455 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1673,963,931 - 74,777,540 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0673,862,655 - 74,675,458 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0674,358,166 - 75,172,342 (+)NCBIUU_Cfam_GSD_1.0
Negr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505883,586,504 - 84,376,744 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936591113,013 - 899,271 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936591112,864 - 903,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6140,780,723 - 141,647,820 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16140,780,397 - 141,652,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26130,680,413 - 130,791,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12060,848,712 - 61,731,563 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603355,940,383 - 56,522,362 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Negr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474224,054,701 - 24,877,957 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474224,054,340 - 24,881,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Negr1
38672 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1373
Count of miRNA genes:722
Interacting mature miRNAs:894
Transcripts:ENSMUST00000041425, ENSMUST00000074015, ENSMUST00000106065, ENSMUST00000175773
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301222Scc7_mcolon tumor susceptibility 7 (mouse)Not determined3143352986156364108Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse

Markers in Region
04.MMHAP16FLB1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,704,776 - 156,704,931UniSTSGRCm38
MGSCv373156,367,740 - 156,367,895UniSTSGRCm37
Celera3163,173,164 - 163,173,319UniSTS
Cytogenetic Map3H4UniSTS
Whitehead_YAC3 UniSTS
10.MMHAP86FLD1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,703,856 - 156,704,050UniSTSGRCm38
MGSCv373156,366,820 - 156,367,014UniSTSGRCm37
Celera3163,172,242 - 163,172,438UniSTS
Cytogenetic Map3H4UniSTS
Whitehead_YAC3 UniSTS
17.MMHAP82FRF8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,923,273 - 156,923,425UniSTSGRCm38
MGSCv373156,586,237 - 156,586,389UniSTSGRCm37
Celera3163,383,027 - 163,383,179UniSTS
Cytogenetic Map3H4UniSTS
Whitehead_YAC3 UniSTS
18.MMHAP62FRF9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,742,463 - 156,742,613UniSTSGRCm38
MGSCv373156,405,427 - 156,405,577UniSTSGRCm37
Cytogenetic Map3H4UniSTS
Whitehead_YAC3 UniSTS
40.MMHAP70FLF4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383157,053,409 - 157,053,606UniSTSGRCm38
MGSCv373156,716,373 - 156,716,570UniSTSGRCm37
Celera3163,514,660 - 163,514,847UniSTS
Celera3163,513,243 - 163,514,847UniSTS
Cytogenetic Map3H4UniSTS
Whitehead_YAC3 UniSTS
47.MMHAP35FRH11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,562,315 - 156,562,480UniSTSGRCm38
MGSCv373156,225,279 - 156,225,444UniSTSGRCm37
Celera3163,021,548 - 163,021,713UniSTS
Cytogenetic Map3H4UniSTS
Whitehead_YAC3 UniSTS
D3Mit163  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,658,328 - 156,658,471UniSTSGRCm38
MGSCv373156,321,292 - 156,321,435UniSTSGRCm37
Celera3163,120,191 - 163,120,338UniSTS
Cytogenetic Map3H4UniSTS
cM Map387.6UniSTS
Whitehead Genetic366.7UniSTS
Whitehead/MRC_RH31723.35UniSTS
D3Mit89  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,837,105 - 156,837,325UniSTSGRCm38
MGSCv373156,500,069 - 156,500,289UniSTSGRCm37
Celera3163,297,048 - 163,297,262UniSTS
Cytogenetic Map3H4UniSTS
cM Map386.1UniSTS
Whitehead Genetic365.6UniSTS
Whitehead/MRC_RH31730.29UniSTS
Whitehead_YAC3 UniSTS
RH139201  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383157,315,974 - 157,316,143UniSTSGRCm38
MGSCv373156,978,938 - 156,979,107UniSTSGRCm37
Celera3163,777,841 - 163,778,010UniSTS
Cytogenetic Map3H4UniSTS
RH115122  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383156,693,258 - 156,693,407UniSTSGRCm38
MGSCv373156,356,222 - 156,356,371UniSTSGRCm37
Celera3163,161,723 - 163,161,872UniSTS
Cytogenetic Map3H4UniSTS
cM Map385.0UniSTS
Negr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3H4UniSTS
cM Map380.6UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC170189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ487032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC146005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC146007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA884108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000041425   ⟹   ENSMUSP00000041132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3156,267,596 - 156,877,466 (+)Ensembl
GRCm38.p6 Ensembl3156,561,959 - 157,171,829 (+)Ensembl
Ensembl Acc Id: ENSMUST00000074015   ⟹   ENSMUSP00000073664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3156,267,431 - 157,022,082 (+)Ensembl
GRCm38.p6 Ensembl3156,561,794 - 157,316,445 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106065   ⟹   ENSMUSP00000101680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3156,267,606 - 156,904,865 (+)Ensembl
GRCm38.p6 Ensembl3156,561,969 - 157,199,228 (+)Ensembl
Ensembl Acc Id: ENSMUST00000175773   ⟹   ENSMUSP00000135531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3156,267,787 - 156,721,881 (+)Ensembl
GRCm38.p6 Ensembl3156,562,150 - 157,016,244 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3156,267,783 - 156,271,770 (+)Ensembl
GRCm38.p6 Ensembl3156,562,146 - 156,566,133 (+)Ensembl
RefSeq Acc Id: NM_001039094   ⟹   NP_001034183
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393156,267,431 - 157,022,101 (+)NCBI
GRCm383156,561,794 - 157,316,464 (+)NCBI
MGSCv373156,224,758 - 156,979,411 (+)RGD
Celera3163,010,595 - 163,778,331 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_177274   ⟹   NP_796248
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393156,267,431 - 156,877,466 (+)NCBI
GRCm383156,561,794 - 157,171,829 (+)NCBI
MGSCv373156,224,758 - 156,979,411 (+)RGD
Celera3163,010,595 - 163,778,331 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501577   ⟹   XP_006501640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393156,266,082 - 156,906,537 (+)NCBI
GRCm383156,561,790 - 157,200,900 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501578   ⟹   XP_006501641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393156,266,082 - 156,956,277 (+)NCBI
GRCm383156,561,790 - 157,250,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163133   ⟹   XP_036019026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393156,266,082 - 157,022,098 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001034183   ⟸   NM_001039094
- Peptide Label: isoform a precursor
- UniProtKB: Q3UHQ8 (UniProtKB/Swiss-Prot),   Q80T70 (UniProtKB/Swiss-Prot),   Q80Z24 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_796248   ⟸   NM_177274
- Peptide Label: isoform b precursor
- UniProtKB: A0A4W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501641   ⟸   XM_006501578
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006501640   ⟸   XM_006501577
- Peptide Label: isoform X2
- UniProtKB: D3Z4T6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000073664   ⟸   ENSMUST00000074015
Ensembl Acc Id: ENSMUSP00000101680   ⟸   ENSMUST00000106065
Ensembl Acc Id: ENSMUSP00000041132   ⟸   ENSMUST00000041425
Ensembl Acc Id: ENSMUSP00000135531   ⟸   ENSMUST00000175773
RefSeq Acc Id: XP_036019026   ⟸   XM_036163133
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80Z24-F1-model_v2 AlphaFold Q80Z24 1-348 view protein structure

Promoters
RGD ID:6833403
Promoter ID:MM_KWN:36489
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000106065,   NM_001039094,   OTTMUST00000058687,   OTTMUST00000058689,   UC008RUY.1,   UC008RUZ.1,   UC008RVB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363156,223,846 - 156,225,492 (-)MPROMDB
RGD ID:6882692
Promoter ID:EPDNEW_M4797
Type:initiation region
Name:Negr1_1
Description:Mus musculus neuronal growth regulator 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383156,561,835 - 156,561,895EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444846 AgrOrtholog
Ensembl Genes ENSMUSG00000040037 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041425 ENTREZGENE
  ENSMUST00000041425.12 UniProtKB/TrEMBL
  ENSMUST00000074015 ENTREZGENE
  ENSMUST00000074015.11 UniProtKB/Swiss-Prot
  ENSMUST00000106065 ENTREZGENE
  ENSMUST00000106065.2 UniProtKB/TrEMBL
  ENSMUST00000175773.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  IgLON_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:320840 UniProtKB/Swiss-Prot
MGD MGI:2444846 ENTREZGENE
NCBI Gene 320840 ENTREZGENE
PANTHER IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NEURONAL GROWTH REGULATOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PhenoGen Negr1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4W9 ENTREZGENE, UniProtKB/TrEMBL
  D3Z4T6 ENTREZGENE, UniProtKB/TrEMBL
  H3BKU7_MOUSE UniProtKB/TrEMBL
  NEGR1_MOUSE UniProtKB/Swiss-Prot
  Q3UHQ8 ENTREZGENE
  Q80T70 ENTREZGENE
  Q80Z24 ENTREZGENE
UniProt Secondary Q3UHQ8 UniProtKB/Swiss-Prot
  Q80T70 UniProtKB/Swiss-Prot