Ptgfr (prostaglandin F receptor) - Rat Genome Database

Name: Ptgfr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ptgfr (prostaglandin F receptor) Rattus norvegicus

Analyze

Symbol:

Ptgfr

Name:

prostaglandin F receptor

RGD ID:

3436

Description:

Predicted to enable prostaglandin F receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling using intracellular calcium source; cellular response to prostaglandin D stimulus; and response to estradiol. Predicted to act upstream of or within negative regulation of apoptotic process and response to lipopolysaccharide. Predicted to be located in cytoplasm and extracellular region. Predicted to be active in plasma membrane. Orthologous to human PTGFR (prostaglandin F receptor); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

PF2AR; PGF receptor; PGF2 alpha receptor; PGF2-alpha receptor; prostaglandin F2-alpha receptor; prostanoid FP receptor

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PTGFR (prostaglandin F receptor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Ptgfr (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ptgfr (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PTGFR (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PTGFR (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ptgfr (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PTGFR (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PTGFR (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ptgfr (prostaglandin F receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ptgfr (prostaglandin F receptor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PTGFR (prostaglandin F receptor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ptgfr (prostaglandin F receptor (FP))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7497	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ptgfr	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	240,731,185 - 240,766,674 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	240,733,375 - 240,765,650 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	248,532,501 - 248,564,762 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	246,419,523 - 246,451,794 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	241,298,586 - 241,330,952 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	257,005,813 - 257,039,036 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	257,005,829 - 257,038,105 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	275,684,139 - 275,717,230 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	2	232,669,635 - 232,701,826 (-)	NCBI		Celera
RH 3.4 Map	2	1652.91	RGD
Cytogenetic Map	2	q45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Airway Obstruction (ISO)

endometriosis (ISO)

genetic disease (ISO)

myoepithelioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-diaminotoluene (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2-methoxyethanol (EXP)

3-chloropropane-1,2-diol (EXP)

3-methylcholanthrene (ISO)

4-tert-Octylphenol (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

AL 8810 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

asbestos (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

clothianidin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

diclofenac (ISO)

Dicyclohexyl phthalate (EXP)

dimethylarsinic acid (ISO)

dioxygen (ISO)

endosulfan (EXP)

fluprostenol (ISO)

furan (EXP)

GW 4064 (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

metformin (EXP)

methylarsonic acid (ISO)

N-nitrosodiethylamine (EXP)

Nonylphenol (EXP)

oxidopamine (ISO)

ozone (ISO)

p-tert-Amylphenol (EXP)

paraquat (EXP)

phorbol 13-acetate 12-myristate (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

progesterone (ISO)

prostaglandin F2alpha (EXP,ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IBA)

calcium-mediated signaling using intracellular calcium source (ISO)

cellular response to prostaglandin D stimulus (ISO)

inflammatory response (IBA)

negative regulation of apoptotic process (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of cytosolic calcium ion concentration (IBA)

positive regulation of gene expression (ISO)

regulation of multicellular organismal process (IEA)

response to estradiol (ISO)

response to lipopolysaccharide (ISO)

Cellular Component

cytoplasm (ISO)

extracellular region (ISO)

plasma membrane (IBA,ISO)

Molecular Function

prostaglandin F receptor activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium/calcium-mediated signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	NADPH oxidase is involved in prostaglandin F2alpha-induced hypertrophy of vascular smooth muscle cells: induction of NOX1 by PGF2alpha.	Katsuyama M, etal., J Biol Chem 2002 Apr 19;277(16):13438-42.
4.	Cloning and expression of a cDNA for rat prostaglandin F2 alpha receptor.	Kitanaka J, etal., Prostaglandins 1994 Jul;48(1):31-41.
5.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
6.	Cloning of the rat and human prostaglandin F2 alpha receptors and the expression of the rat prostaglandin F2 alpha receptor.	Lake S, etal., FEBS Lett 1994 Dec 5;355(3):317-25.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	Characterization and regulation of a mRNA encoding the prostaglandin F2alpha receptor in the rat ovary.	Olofsson JI, etal., Mol Cell Endocrinol 1996 Oct 14;123(1):45-52.
10.	Negative regulatory activity of a prostaglandin F2 alpha receptor associated protein (FPRP).	Orlicky DJ Prostaglandins Leukot Essent Fatty Acids 1996 Apr;54(4):247-59.
11.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
12.	GOA pipeline	RGD automated data pipeline
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:10575000	PMID:10684792	PMID:12606450	PMID:15834430	PMID:18508192	PMID:18587449	PMID:18703136	PMID:19429887	PMID:21668646	PMID:24136214	PMID:25341845

Genomics

Comparative Map Data

Ptgfr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	240,731,185 - 240,766,674 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	240,733,375 - 240,765,650 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	248,532,501 - 248,564,762 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	246,419,523 - 246,451,794 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	241,298,586 - 241,330,952 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	257,005,813 - 257,039,036 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	257,005,829 - 257,038,105 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	275,684,139 - 275,717,230 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	2	232,669,635 - 232,701,826 (-)	NCBI		Celera
RH 3.4 Map	2	1652.91	RGD
Cytogenetic Map	2	q45	NCBI

PTGFR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	78,490,974 - 78,540,701 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	78,303,884 - 78,540,701 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	78,956,659 - 79,006,386 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	78,729,316 - 78,778,974 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	78,668,748 - 78,716,495	NCBI
Celera	1	77,196,263 - 77,245,909 (+)	NCBI		Celera
Cytogenetic Map	1	p31.1	NCBI
HuRef	1	77,088,559 - 77,137,983 (+)	NCBI		HuRef
CHM1_1	1	79,073,150 - 79,122,783 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	78,329,334 - 78,379,549 (+)	NCBI		T2T-CHM13v2.0

Ptgfr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	151,504,247 - 151,543,165 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	151,502,139 - 151,543,267 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	151,798,610 - 151,837,528 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	151,796,502 - 151,837,630 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	151,461,574 - 151,500,492 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	151,737,371 - 151,774,818 (-)	NCBI		MGSCv36	mm8
Celera	3	158,277,266 - 158,316,906 (-)	NCBI		Celera
Cytogenetic Map	3	H3	NCBI
cM Map	3	76.96	NCBI

Ptgfr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	14,768,180 - 14,815,971 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	14,768,208 - 14,816,462 (-)	NCBI	ChiLan1.0	ChiLan1.0

PTGFR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	147,500,518 - 147,550,952 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	77,714,164 - 77,762,171 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	79,794,831 - 79,841,467 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	79,794,831 - 79,841,467 (+)	Ensembl	panpan1.1		panPan2

PTGFR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	68,460,107 - 68,498,793 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	68,460,107 - 68,499,789 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	71,118,473 - 71,157,160 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	69,042,081 - 69,085,711 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	69,042,099 - 69,085,710 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	68,552,458 - 68,591,140 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	68,497,489 - 68,536,279 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	68,982,324 - 69,021,011 (-)	NCBI		UU_Cfam_GSD_1.0

Ptgfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	89,724,967 - 89,764,078 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936571	5,235,687 - 5,274,432 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936571	5,235,678 - 5,274,417 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTGFR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	134,727,343 - 134,777,072 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	134,727,334 - 134,777,067 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	124,884,700 - 124,933,160 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	6	q31-q32	NCBI

PTGFR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	54,660,329 - 54,706,212 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	54,659,197 - 54,704,452 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	62,818,688 - 62,866,086 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptgfr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	18,723,458 - 18,768,083 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	18,723,558 - 19,031,578 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ptgfr
215 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	772
Count of miRNA genes:	312
Interacting mature miRNAs:	415
Transcripts:	ENSRNOT00000071195
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
1331767	Hrtrt12	Heart rate QTL 12	3.373		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	218414747	240841241	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
9587428	Epfw6	Epididymal fat weight QTL 6	7.47	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	2	223389739	249053267	Rat
7411555	Bw132	Body weight QTL 132		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	223389739	249053267	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	229059610	249053267	Rat

Markers in Region

AI059834

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	240,734,868 - 240,734,996 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	257,007,323 - 257,007,450	NCBI	Rnor6.0
Rnor_5.0	2	275,685,633 - 275,685,760	UniSTS	Rnor5.0
Celera	2	232,671,129 - 232,671,256	UniSTS
RH 3.4 Map	2	1650.32	UniSTS
Cytogenetic Map	2	q45	UniSTS

RH94482

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	240,734,337 - 240,734,498 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	257,006,792 - 257,006,952	NCBI	Rnor6.0
Rnor_5.0	2	275,685,102 - 275,685,262	UniSTS	Rnor5.0
Celera	2	232,670,598 - 232,670,758	UniSTS
RH 3.4 Map	2	1652.91	UniSTS
Cytogenetic Map	2	q45	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		42	10	10		10					5
Low	2	1	30	21	14	21	6	6	68	35	28	11	6
Below cutoff	1		17	10	5	10	2	5	6		5		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D28581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S74898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U26663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U47287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X83856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000071195 ⟹ ENSRNOP00000065253

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	240,733,375 - 240,765,650 (-)	Ensembl
Rnor_6.0 Ensembl	2	257,005,829 - 257,038,105 (-)	Ensembl

RefSeq Acc Id:

NM_013115 ⟹ NP_037247

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	240,733,375 - 240,765,650 (-)	NCBI
Rnor_6.0	2	257,005,829 - 257,038,105 (-)	NCBI
Rnor_5.0	2	275,684,139 - 275,717,230 (-)	NCBI
Celera	2	232,669,635 - 232,701,826 (-)	RGD

Sequence:

show sequence

GGCAATGTTGCAAGCTGAGGCCCCTTGGGGGTGTGGGCTCTGCAACTGGCAAAGTCAACTATGT
CTGCACTTCGAGGCTGCACAGTCGTGACAGAGAGATGACTTGAGGGGGACGGCGTTTATCTCCA
CAACGATGTCCATAAACAGTTCCAAGCAGCCGGCGTCCTCTGCAGCTGGACTCATCGCCAACAC
GACTTGCCAGACGGAGAACCGGCTTTCAGTGTTCTTTTCAATAATCTTCATGACGGTGGGGATT
GTATCTAACAGCCTGGCCATTGCCATCCTCATGAAGGCATATCAGAGATTTAGACGGAAGTCGA
AGGCTTCTTTCCTGCTCTTGGCTAGTGGCCTGGTGATCACAGACTTCTTCGGCCACCTCATCAA
CGGAGGGATAGCTGTCTTCGTATACGCTTCTGATAAAGACTGGATCCGCTTCGATCAATCGAAC
ATCCTGTGCAGTGTTTTTGGGATCTCCATGGTGTTCTCTGGCTTGTGCCCACTTTTCCTGGGCA
GTACGATGGCCATTGAGAGGTGCATCGGGGTCACCAACCCTCTATTCCACTCTACAAAGATCAC
GTCTAAGCATGTGAAAATGATACTGAGCGGTGTGTGCATGTTTGCTGTCTTCGTGGCCCTGTTG
CCCATCCTTGGACACCGAGATTATCAAATCCAAGCATCCAGAACTTGGTGCTTCTACAACACAG
AGCACATCGAAGACTGGGAAGACAGGTTCTATCTCTTGTTCTTTTCTTCCCTGGGACTCTTAGC
TCTCGGCATCTCATTCTCGTGCAACGCCGTCACGGGAGTCACACTTTTGAGAGTGAAGTTTAGA
AGTCAGCAGCACAGGCAAGGCAGGTCTCACCACCTGGAGATGGTCATTCAGCTCCTGGCCATAA
TGTGTGTCTCCTGCGTCTGCTGGAGTCCCTTTCTGGTGACGATGGCCAACATTGCAATCAATGG
AAATAATTCCCCAGTGACCTGTGAGACGACGCTCTTTGCTCTCCGAATGGCAACCTGGAACCAG
ATATTAGACCCCTGGGTCTACATTCTGCTACGGAAGGCTGTCCTTAGGAACCTGTACAAGCTTG
CCAGTCGCTGCTGTGGAGTGAACATCATCAGCTTGCACATCTGGGAACTCAGCTCCATCAAGAA
TTCCTTAAAGGTTGCTGCTATCTCTGAGTCACCGGCTGCAGAGAAGGAGAATCAGCAAGCATCT
AGTGAGGCTGGACTGTAAGTCAATGCACAGCTAGAAGAAAGTTATGGGAACTTCCGAAACATCT
TACCTGACCAGACTCAGAGCATAACTGGAACACTTGGACCTCTGTGTGTAGTTCGGGAGTACAC
TGGTCAGACAAAGCTTCTGACTTTTGTTATGCTGGCTGCTGCATGGTTGTGCATTTTCATTTGT
TGGTGTCAACAGGAGATTCAACATGGTGGAGTTAAGTAGAGTACACATTTTATCTGCGTGACTT
ATGTTTTTGGAATAAATGAATCTGTTGAGGCCCTGTGCCTTTATTTGACCTATTTTTCCAAGCA
CCTTAATGCTACCTGCACCGTGACATGGCCATTTGAGGAGCACTGACTTGCAGACAAAGCTTAA
AGTAACACAAGACTTTTTGTGTTTGTGTGTGCAGCTCTGCTCTGTTTACCAACCCACGTGTCCT
CAATGTCTGCATGACCATGACATCTGAGTCTCATGGTGACTTTGATGGCCACTATGTAGGCAGC
TCAGCTTGACATTGTGGGGCTGATGAGGATAATCATTCTTGTCACAACTCACATGTGTGGTTGC
TTGCATTTGTTGTTGTGAAGGTCAATTATTTTTTCCACATTGGCTGTCCTCCTATAAAGTCATA
GGTTTTCAGTGTCTAAGTAATCCCCCTTTCCTCTGAAAATTGTAGAGGAATACAGGCTTTATCT
TAGCACAGATTCAGCTCATGATAGCATATCATAAGCCCTATTGTGGATGATGCAAACATTGAAA
TCCCACTTACACATGCCAAGAACATGGCAGACATTGCTTTACCTGAGCTATCATTTCTGTGTCA
GAGAATAAAAAACGATCAAGACACATTCGAAGTCTCTTGGAGCTATTGTGTTTCTGCCTTACAC
ACACAGGCATAAGGGAGTTCTGTTAACAGTAATTTCACTAAATAAGTTGAACCACACTTCCAAA
AGCCTGTGTTATCAGTGAGGAGTGGAAAGATCTGAAATTAGCCAGGAGTTGGGATCACTGTTGT
GGTTAACCCGAGGCTAAGGGACAAGATTCTGTCGCCAAGTTTCCCAATCTTAATTCACACTTCT
CCTTTGTATAATTTAACACAAAGATACTCAATTTCAGTAATCACTCTAAACATTAGTTCCATCA
GTGGCTACGGTTAGTGGTTATATTTTATAAAGAAATGTATTTTCATATTTAAAAAATTCCTTTC
TTTTATCGTTTGTCTTTATTTAAAAATTTCTATTTTTTTCTTTGCTATATGTATGAGTGTTTCA
CCCGAATGTATTTCCGAGCATTACGTACCTTCCTAGAACTTACTTAAACCAGAAAAGGACATCG
GGTCCTTACAGATGGTTATAAGCTACCATGTGGATACTAGGAATTGAGCCCAGGTTCTCTGGAA
GAGCAGCTGTAGAGAGAATTTTAATCCAGCAATTTGTGAATTCAATAGACTTAAAATAGTACCT
CCAACATGGTTTCTCTGGCAAAAGATCACATCCGAAGAGCTTCTAGGTTTATATGATCTGGCTT
GAATGCAGACATTCTCTGGATTATAGTACAATCTGGCTGTAACACAGACACACCCTTAGTACAC
ACCTTTAATCCCTAACAGTGAAGGAAAGTTAGTTTGTAGAAGGAAGTAGTCACTTTTGAAATCG
ATGTCCAGTTGAGGGTCAGACAGAGTGACGAATCAGAGAAAGTTTTGACAGAATGAGTTAGAGA
AAAGATGTGCTCAATTCACGTGAGAACAGTACGGAAAGAGAGGATGCCGAAAAGGG

hide sequence

RefSeq Acc Id:

XM_006233486 ⟹ XP_006233548

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	240,731,185 - 240,766,674 (-)	NCBI
Rnor_6.0	2	257,005,813 - 257,039,036 (-)	NCBI
Rnor_5.0	2	275,684,139 - 275,717,230 (-)	NCBI

Sequence:

show sequence

GCCCTGATTTCTGTGTCCCTTTTTGGTTGGACTTGGAATTAACTCATTCCCCATAAGCTGTATC
CGACCACCCCACACACCAGCGTCTAGGCATGCCTTGGCTCTCCTCATTCATATCTGGCAGCTTC
AGAAATGACCTCTTTCATTTGGAAATGAGTTTAAATCAAAACTTTCCGTAGTTGTCTGGTGGCC
GAAAGCGTTGTTGTCTTGTGCTGCTTGGTGGCCAAAGCATCAGAGGACCATGCCACAGCCTCTC
GCTGCGAGGGTAGAGAAAGTGGGCGGAGAGGAGGGAGCCGAGGAAGGGCGGAGGTCACCCAGCC
CTCCAGCCTGCCAAGGCTGGGAGCATCTCTAGGTGCTCTGGAGTCCAGGACACAATAGGTCCTG
CCTGTGATTCAGCGCTCAGAAGGGTCCTAGGGAGGCGGTGGAACCAGGGGTTGCGGCTGCGCGG
GGCTGGTTGCGCCATGGAACACCGGGCTCCGCGCTCTTCTGCTCCGGACACAGCCACTCGATGG
CCCAGGATGCCGAGATGTCTGCACTTCGAGGCTGCACAGTCGTGACAGAGAGATGACTTGAGGG
GGACGGCGTTTATCTCCACAACGATGTCCATAAACAGTTCCAAGCAGCCGGCGTCCTCTGCAGC
TGGACTCATCGCCAACACGACTTGCCAGACGGAGAACCGGCTTTCAGTGTTCTTTTCAATAATC
TTCATGACGGTGGGGATTGTATCTAACAGCCTGGCCATTGCCATCCTCATGAAGGCATATCAGA
GATTTAGACGGAAGTCGAAGGCTTCTTTCCTGCTCTTGGCTAGTGGCCTGGTGATCACAGACTT
CTTCGGCCACCTCATCAACGGAGGGATAGCTGTCTTCGTATACGCTTCTGATAAAGACTGGATC
CGCTTCGATCAATCGAACATCCTGTGCAGTGTTTTTGGGATCTCCATGGTGTTCTCTGGCTTGT
GCCCACTTTTCCTGGGCAGTACGATGGCCATTGAGAGGTGCATCGGGGTCACCAACCCTCTATT
CCACTCTACAAAGATCACGTCTAAGCATGTGAAAATGATACTGAGCGGTGTGTGCATGTTTGCT
GTCTTCGTGGCCCTGTTGCCCATCCTTGGACACCGAGATTATCAAATCCAAGCATCCAGAACTT
GGTGCTTCTACAACACAGAGCACATCGAAGACTGGGAAGACAGGTTCTATCTCTTGTTCTTTTC
TTCCCTGGGACTCTTAGCTCTCGGCATCTCATTCTCGTGCAACGCCGTCACGGGAGTCACACTT
TTGAGAGTGAAGTTTAGAAGTCAGCAGCACAGGCAAGGCAGGTCTCACCACCTGGAGATGGTCA
TTCAGCTCCTGGCCATAATGTGTGTCTCCTGCGTCTGCTGGAGTCCCTTTCTGGTGACGATGGC
CAACATTGCAATCAATGGAAATAATTCCCCAGTGACCTGTGAGACGACGCTCTTTGCTCTCCGA
ATGGCAACCTGGAACCAGATATTAGACCCCTGGGTCTACATTCTGCTACGGAAGGCTGTCCTTA
GGAACCTGTACAAGCTTGCCAGTCGCTGCTGTGGAGTGAACATCATCAGCTTGCACATCTGGGA
ACTCAGCTCCATCAAGAATTCCTTAAAGGTTGCTGCTATCTCTGAGTCACCGGCTGCAGAGAAG
GAGAATCAGCAAGCATCTAGTGAGGCTGGACTGTAAGTCAATGCACAGCTAGAAGAAAGTTATG
GGAACTTCCGAAACATCTTACCTGACCAGACTCAGAGCATAACTGGAACACTTGGACCTCTGTG
TGTAGTTCAGGAGTACACTGGTCAGACAAAGCTTCTGACTTTTGTTATGCTGGCTGCTGCATGG
TTGTGCATTTTCATTTGTTGGTGTCAACAGGAGATTCAACATGGTGGAGTTAAGTAGAGTACAC
ATTTTATCTGCGTGACTTATGTTTTTGGAATAAATGAATCTGTTGAGGCCCTGTGCCTTTATTT
GACCTATTTTTCCAAGCACCTTAATGCTACCTGCACCGTGACATGGCCATTTGAGGAGCACTGA
CTTGCAGACAAAGCTTAAAGTAACACAAGACTTTTTGTGTTTGTGTGTGCAGCTCTGCTCTGTT
TACCAACCCACGTGTCCTCAATGTCTGCATGACCATGACATCTGAGTCTCGTGGTGACTTTGAT
GGCCACTATGTAGGCAGCTCAGCTTGACATTGTGGGGCTGATGAGGATAATCATTCTTGTCACA
ACTCACATGTGTGGTTGCTTGCATTTGTTGTTGTGAAGGTCAATTATTTTTTCCACATTGGCTG
TCCTCCTATAAAGTCATAGGTTTTCAGTGTCTAAGTAATCCCCCTTTCCTCTGAAAATTGTAGA
GGAATACAGGCTTTATCTTAGCACAGATTCAGCTCATGATAGCATATCATAAGCCCTATTGTGG
ATGATGCAAACATTGAAATCCCACTTACACATGCCAAGAACATGGCAGACATTGCTTTACCTGA
GCTATCATTTCTGTGTCAGAGAATAAAAAACGATCAAGACACATTCGAAGTCTCTTGGAGCTAT
TGTGTTTCTGCCTTACACACACAGGCATAAGGGAGTTCTGTTAACAGTAATTTCACTAAATAAG
TTGAACCACACTTCCAAAAGCCTGTGTTATCAGTGAGGAGTGGAAAGATCTGAAATTAGCCAGG
AGTTGGGATCCACTGTTGTGGTTAACCCGAGGCTAAGGGACAAGATTCTGTCGCCAAGTTTCCC
AATCTTAATTCACACTTCTCCTTTGTATAATTTAACACAAAGATACTCAATTTCAGTAATCACT
CTAAACATTAGTTCCATCAGTGACTACGGTTAGTGGTTATATTTTATAAAGAAATGTATTTTCA
TATTTAAAAAATTCCTTTCTTTTATCGTTTGTCTTTATTTAAAAATTTCTATTTTTTTCTTTGC
TATGTGTATGAGTGTTTCACCCGAATGTATTTCCGAGCATTACGTACCTTCCTAGAACTTACTT
AAACCAGAAAAGGACATCGGGTCCTTACAGATGGTTATAAGCTACCATGTGGATACTAGGAATT
GAGCCCAGGTTCTCTGGAAGAGCAGCTGTAGAGAGAATTTTAATCCAGCAATTTGTGAATTCAA
TAGACTTAAAATAGTACCTCCAACATGGTTTCTCTGGCAAAAGATCACATCCGAAGAGCTTCTA
GGTTTATATGATCTGGCTTGAATGCAGACATTCTCTGGATTATAGTACAATCTGGCTGTAACAC
AGACACACCCTTAGTACACACCTTTAATCCCTAACAGTGAAGGAAAGTTAGTTTGTAGAAGGAA
GTAGTCACTTTTGAAATCGATGTCCAGTTGAGGGTCAGACAGAGTGACGAATCAGAGAAAGTTT
TGACAGAATGAGTTAGAGAAAGGATGTGCTCAATTCACGTGAGAACAGTACGGAAAGAGAGGAT
GCCGAAAAGGGGAGAGAGAGAGAGAGA

hide sequence

RefSeq Acc Id:

XM_006233487 ⟹ XP_006233549

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	240,731,185 - 240,766,039 (-)	NCBI
Rnor_6.0	2	257,005,813 - 257,038,495 (-)	NCBI
Rnor_5.0	2	275,684,139 - 275,717,230 (-)	NCBI

Sequence:

show sequence

TGGCTGCATTCCCACAGCCGGATTCCCACGGCCTCTGGATTCTCCAGCCGGACCCAGGGTTGAT
AAACTCCTGTGGCGACAGCCGCAGAGGCCCCGCTGGAGAGCACTATAGGCTGAGATTGGCAGGG
ATTTTGGACTCAATTCGCGATGTCTGCACTTCGAGGCTGCACAGTCGTGACAGAGAGATGACTT
GAGGGGGACGGCGTTTATCTCCACAACGATGTCCATAAACAGTTCCAAGCAGCCGGCGTCCTCT
GCAGCTGGACTCATCGCCAACACGACTTGCCAGACGGAGAACCGGCTTTCAGTGTTCTTTTCAA
TAATCTTCATGACGGTGGGGATTGTATCTAACAGCCTGGCCATTGCCATCCTCATGAAGGCATA
TCAGAGATTTAGACGGAAGTCGAAGGCTTCTTTCCTGCTCTTGGCTAGTGGCCTGGTGATCACA
GACTTCTTCGGCCACCTCATCAACGGAGGGATAGCTGTCTTCGTATACGCTTCTGATAAAGACT
GGATCCGCTTCGATCAATCGAACATCCTGTGCAGTGTTTTTGGGATCTCCATGGTGTTCTCTGG
CTTGTGCCCACTTTTCCTGGGCAGTACGATGGCCATTGAGAGGTGCATCGGGGTCACCAACCCT
CTATTCCACTCTACAAAGATCACGTCTAAGCATGTGAAAATGATACTGAGCGGTGTGTGCATGT
TTGCTGTCTTCGTGGCCCTGTTGCCCATCCTTGGACACCGAGATTATCAAATCCAAGCATCCAG
AACTTGGTGCTTCTACAACACAGAGCACATCGAAGACTGGGAAGACAGGTTCTATCTCTTGTTC
TTTTCTTCCCTGGGACTCTTAGCTCTCGGCATCTCATTCTCGTGCAACGCCGTCACGGGAGTCA
CACTTTTGAGAGTGAAGTTTAGAAGTCAGCAGCACAGGCAAGGCAGGTCTCACCACCTGGAGAT
GGTCATTCAGCTCCTGGCCATAATGTGTGTCTCCTGCGTCTGCTGGAGTCCCTTTCTGGTGACG
ATGGCCAACATTGCAATCAATGGAAATAATTCCCCAGTGACCTGTGAGACGACGCTCTTTGCTC
TCCGAATGGCAACCTGGAACCAGATATTAGACCCCTGGGTCTACATTCTGCTACGGAAGGCTGT
CCTTAGGAACCTGTACAAGCTTGCCAGTCGCTGCTGTGGAGTGAACATCATCAGCTTGCACATC
TGGGAACTCAGCTCCATCAAGAATTCCTTAAAGGTTGCTGCTATCTCTGAGTCACCGGCTGCAG
AGAAGGAGAATCAGCAAGCATCTAGTGAGGCTGGACTGTAAGTCAATGCACAGCTAGAAGAAAG
TTATGGGAACTTCCGAAACATCTTACCTGACCAGACTCAGAGCATAACTGGAACACTTGGACCT
CTGTGTGTAGTTCAGGAGTACACTGGTCAGACAAAGCTTCTGACTTTTGTTATGCTGGCTGCTG
CATGGTTGTGCATTTTCATTTGTTGGTGTCAACAGGAGATTCAACATGGTGGAGTTAAGTAGAG
TACACATTTTATCTGCGTGACTTATGTTTTTGGAATAAATGAATCTGTTGAGGCCCTGTGCCTT
TATTTGACCTATTTTTCCAAGCACCTTAATGCTACCTGCACCGTGACATGGCCATTTGAGGAGC
ACTGACTTGCAGACAAAGCTTAAAGTAACACAAGACTTTTTGTGTTTGTGTGTGCAGCTCTGCT
CTGTTTACCAACCCACGTGTCCTCAATGTCTGCATGACCATGACATCTGAGTCTCGTGGTGACT
TTGATGGCCACTATGTAGGCAGCTCAGCTTGACATTGTGGGGCTGATGAGGATAATCATTCTTG
TCACAACTCACATGTGTGGTTGCTTGCATTTGTTGTTGTGAAGGTCAATTATTTTTTCCACATT
GGCTGTCCTCCTATAAAGTCATAGGTTTTCAGTGTCTAAGTAATCCCCCTTTCCTCTGAAAATT
GTAGAGGAATACAGGCTTTATCTTAGCACAGATTCAGCTCATGATAGCATATCATAAGCCCTAT
TGTGGATGATGCAAACATTGAAATCCCACTTACACATGCCAAGAACATGGCAGACATTGCTTTA
CCTGAGCTATCATTTCTGTGTCAGAGAATAAAAAACGATCAAGACACATTCGAAGTCTCTTGGA
GCTATTGTGTTTCTGCCTTACACACACAGGCATAAGGGAGTTCTGTTAACAGTAATTTCACTAA
ATAAGTTGAACCACACTTCCAAAAGCCTGTGTTATCAGTGAGGAGTGGAAAGATCTGAAATTAG
CCAGGAGTTGGGATCCACTGTTGTGGTTAACCCGAGGCTAAGGGACAAGATTCTGTCGCCAAGT
TTCCCAATCTTAATTCACACTTCTCCTTTGTATAATTTAACACAAAGATACTCAATTTCAGTAA
TCACTCTAAACATTAGTTCCATCAGTGACTACGGTTAGTGGTTATATTTTATAAAGAAATGTAT
TTTCATATTTAAAAAATTCCTTTCTTTTATCGTTTGTCTTTATTTAAAAATTTCTATTTTTTTC
TTTGCTATGTGTATGAGTGTTTCACCCGAATGTATTTCCGAGCATTACGTACCTTCCTAGAACT
TACTTAAACCAGAAAAGGACATCGGGTCCTTACAGATGGTTATAAGCTACCATGTGGATACTAG
GAATTGAGCCCAGGTTCTCTGGAAGAGCAGCTGTAGAGAGAATTTTAATCCAGCAATTTGTGAA
TTCAATAGACTTAAAATAGTACCTCCAACATGGTTTCTCTGGCAAAAGATCACATCCGAAGAGC
TTCTAGGTTTATATGATCTGGCTTGAATGCAGACATTCTCTGGATTATAGTACAATCTGGCTGT
AACACAGACACACCCTTAGTACACACCTTTAATCCCTAACAGTGAAGGAAAGTTAGTTTGTAGA
AGGAAGTAGTCACTTTTGAAATCGATGTCCAGTTGAGGGTCAGACAGAGTGACGAATCAGAGAA
AGTTTTGACAGAATGAGTTAGAGAAAGGATGTGCTCAATTCACGTGAGAACAGTACGGAAAGAG
AGGATGCCGAAAAGGGGAGAGAGAGAGAGAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_037247	(Get FASTA)	NCBI Sequence Viewer
	XP_006233548	(Get FASTA)	NCBI Sequence Viewer
	XP_006233549	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB19233	(Get FASTA)	NCBI Sequence Viewer
	AAB32739	(Get FASTA)	NCBI Sequence Viewer
	AAB47872	(Get FASTA)	NCBI Sequence Viewer
	BAA05917	(Get FASTA)	NCBI Sequence Viewer
	CAA58736	(Get FASTA)	NCBI Sequence Viewer
	EDL82478	(Get FASTA)	NCBI Sequence Viewer
	EDL82479	(Get FASTA)	NCBI Sequence Viewer
	EDL82480	(Get FASTA)	NCBI Sequence Viewer
	P43118	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_037247 ⟸ NM_013115

- UniProtKB:

Q62787 (UniProtKB/Swiss-Prot), P43118 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSINSSKQPASSAAGLIANTTCQTENRLSVFFSIIFMTVGIVSNSLAIAILMKAYQRFRRKSKA
SFLLLASGLVITDFFGHLINGGIAVFVYASDKDWIRFDQSNILCSVFGISMVFSGLCPLFLGST
MAIERCIGVTNPLFHSTKITSKHVKMILSGVCMFAVFVALLPILGHRDYQIQASRTWCFYNTEH
IEDWEDRFYLLFFSSLGLLALGISFSCNAVTGVTLLRVKFRSQQHRQGRSHHLEMVIQLLAIMC
VSCVCWSPFLVTMANIAINGNNSPVTCETTLFALRMATWNQILDPWVYILLRKAVLRNLYKLAS
RCCGVNIISLHIWELSSIKNSLKVAAISESPAAEKENQQASSEAGL

hide sequence

RefSeq Acc Id:	XP_006233548 ⟸ XM_006233486
- Peptide Label:	isoform X1
- UniProtKB:	Q62787 (UniProtKB/Swiss-Prot), P43118 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSINSSKQPASSAAGLIANTTCQTENRLSVFFSIIFMTVGIVSNSLAIAILMKAYQRFRRKSKA SFLLLASGLVITDFFGHLINGGIAVFVYASDKDWIRFDQSNILCSVFGISMVFSGLCPLFLGST MAIERCIGVTNPLFHSTKITSKHVKMILSGVCMFAVFVALLPILGHRDYQIQASRTWCFYNTEH IEDWEDRFYLLFFSSLGLLALGISFSCNAVTGVTLLRVKFRSQQHRQGRSHHLEMVIQLLAIMC VSCVCWSPFLVTMANIAINGNNSPVTCETTLFALRMATWNQILDPWVYILLRKAVLRNLYKLAS RCCGVNIISLHIWELSSIKNSLKVAAISESPAAEKENQQASSEAGL hide sequence

RefSeq Acc Id:	XP_006233549 ⟸ XM_006233487
- Peptide Label:	isoform X1
- UniProtKB:	Q62787 (UniProtKB/Swiss-Prot), P43118 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSINSSKQPASSAAGLIANTTCQTENRLSVFFSIIFMTVGIVSNSLAIAILMKAYQRFRRKSKA SFLLLASGLVITDFFGHLINGGIAVFVYASDKDWIRFDQSNILCSVFGISMVFSGLCPLFLGST MAIERCIGVTNPLFHSTKITSKHVKMILSGVCMFAVFVALLPILGHRDYQIQASRTWCFYNTEH IEDWEDRFYLLFFSSLGLLALGISFSCNAVTGVTLLRVKFRSQQHRQGRSHHLEMVIQLLAIMC VSCVCWSPFLVTMANIAINGNNSPVTCETTLFALRMATWNQILDPWVYILLRKAVLRNLYKLAS RCCGVNIISLHIWELSSIKNSLKVAAISESPAAEKENQQASSEAGL hide sequence

RefSeq Acc Id:

ENSRNOP00000065253 ⟸ ENSRNOT00000071195

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P43118-F1-model_v2	AlphaFold	P43118	1-366	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3436	AgrOrtholog
BioCyc Gene	G2FUF-50819	BioCyc
Ensembl Genes	ENSRNOG00000046468	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000065253	ENTREZGENE
	ENSRNOP00000065253.1	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000071195	ENTREZGENE
	ENSRNOT00000071195.2	UniProtKB/Swiss-Prot
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot
InterPro	GPCR_Rhodpsn	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot
	PglndnF_rcpt	UniProtKB/Swiss-Prot
	Prostanoid_rcpt	UniProtKB/Swiss-Prot
KEGG Report	rno:25652	UniProtKB/Swiss-Prot
NCBI Gene	25652	ENTREZGENE
PANTHER	PTHR11866	UniProtKB/Swiss-Prot
	PTHR11866:SF4	UniProtKB/Swiss-Prot
Pfam	7tm_1	UniProtKB/Swiss-Prot
PhenoGen	Ptgfr	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot
	PROSTANOIDR	UniProtKB/Swiss-Prot
	PRSTNOIDFPR	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/Swiss-Prot
	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot
TIGR	TC216692
UniProt	P43118	ENTREZGENE, UniProtKB/Swiss-Prot
	Q62787	ENTREZGENE
UniProt Secondary	Q62787	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Ptgfr	Prostaglandin F receptor			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)