Pdlim5 (PDZ and LIM domain 5) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Pdlim5 (PDZ and LIM domain 5) Rattus norvegicus
Analyze
Symbol: Pdlim5
Name: PDZ and LIM domain 5
RGD ID: 621076
Description: Enables actin binding activity; actinin binding activity; and protein kinase C binding activity. Involved in cell growth involved in cardiac muscle cell development; regulation of dendritic spine morphogenesis; and regulation of postsynapse assembly. Located in cytosol; membrane; and postsynaptic density. Is active in glutamatergic synapse and postsynapse. Orthologous to human PDLIM5 (PDZ and LIM domain 5); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Enh; Enh1; enigma homolog; enigma-like PDZ and LIM domains protein; PDZ and LIM domain protein 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82233,625,478 - 233,793,582 (-)NCBIGRCr8
GRCr8 Ensembl2233,628,503 - 233,793,528 (-)EnsemblGRCr8 Ensembl
mRatBN7.22230,952,251 - 231,120,329 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2230,952,248 - 231,120,275 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2238,713,360 - 238,878,372 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02236,606,376 - 236,771,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02231,471,039 - 231,636,044 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02247,815,214 - 247,989,198 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2247,818,243 - 247,988,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02266,345,722 - 266,518,817 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42240,177,301 - 240,304,192 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2223,009,335 - 223,173,420 (-)NCBICelera
RGSC_v3.12240,164,042 - 240,283,654 (-)NCBI
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2-bromohexadecanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
Brodifacoum  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
coumarin  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
disulfiram  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenamidone  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lithium chloride  (ISO)
melphalan  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nitrofen  (EXP)
NS-398  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
propanal  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
succimer  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (ISO)
adherens junction  (IBA)
cell projection  (IEA)
cytoplasm  (IEA,ISO)
cytosol  (IDA,IEA,TAS)
filamentous actin  (IBA)
glutamatergic synapse  (EXP,IDA,IMP)
membrane  (IDA)
postsynapse  (EXP,IDA,IEA)
postsynaptic density  (IDA,IEA)
presynapse  (IEA)
stress fiber  (IBA)
synapse  (IEA)
Z disc  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cardiac fibroblast-derived microRNA passenger strand-enriched exosomes mediate cardiomyocyte hypertrophy. Bang C, etal., J Clin Invest. 2014 May;124(5):2136-46. doi: 10.1172/JCI70577. Epub 2014 Apr 17.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Postsynaptic PDLIM5/Enigma Homolog binds SPAR and causes dendritic spine shrinkage. Herrick S, etal., Mol Cell Neurosci. 2010 Feb;43(2):188-200. doi: 10.1016/j.mcn.2009.10.009. Epub 2009 Nov 10.
4. Protein-protein interaction of zinc finger LIM domains with protein kinase C. Kuroda S, etal., J Biol Chem 1996 Dec 6;271(49):31029-32.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ENH, containing PDZ and LIM domains, heart/skeletal muscle-specific protein, associates with cytoskeletal proteins through the PDZ domain. Nakagawa N, etal., Biochem Biophys Res Commun. 2000 Jun 7;272(2):505-12.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12665800   PMID:16396499   PMID:16549780   PMID:18296710   PMID:20097676   PMID:21532576   PMID:22497889   PMID:25468996   PMID:25524223   PMID:26365342   PMID:27289039  


Genomics

Comparative Map Data
Pdlim5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82233,625,478 - 233,793,582 (-)NCBIGRCr8
GRCr8 Ensembl2233,628,503 - 233,793,528 (-)EnsemblGRCr8 Ensembl
mRatBN7.22230,952,251 - 231,120,329 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2230,952,248 - 231,120,275 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2238,713,360 - 238,878,372 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02236,606,376 - 236,771,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02231,471,039 - 231,636,044 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02247,815,214 - 247,989,198 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2247,818,243 - 247,988,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02266,345,722 - 266,518,817 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42240,177,301 - 240,304,192 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2223,009,335 - 223,173,420 (-)NCBICelera
RGSC_v3.12240,164,042 - 240,283,654 (-)NCBI
Cytogenetic Map2q44NCBI
PDLIM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38494,451,942 - 94,668,223 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl494,451,857 - 94,668,227 (+)EnsemblGRCh38hg38GRCh38
GRCh37495,373,093 - 95,589,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36495,592,061 - 95,808,400 (+)NCBINCBI36Build 36hg18NCBI36
Build 34495,730,215 - 95,946,554NCBI
Celera492,670,285 - 92,886,273 (+)NCBICelera
Cytogenetic Map4q22.3NCBI
HuRef491,110,743 - 91,326,816 (+)NCBIHuRef
CHM1_1495,350,391 - 95,566,419 (+)NCBICHM1_1
T2T-CHM13v2.0497,767,448 - 97,983,384 (+)NCBIT2T-CHM13v2.0
Pdlim5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393141,945,346 - 142,101,480 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3141,945,351 - 142,101,454 (-)EnsemblGRCm39 Ensembl
GRCm383142,239,585 - 142,395,719 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3142,239,590 - 142,395,696 (-)EnsemblGRCm38mm10GRCm38
MGSCv373141,903,568 - 142,058,630 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363142,180,044 - 142,333,004 (-)NCBIMGSCv36mm8
Celera3148,660,401 - 148,819,753 (-)NCBICelera
Cytogenetic Map3H1NCBI
cM Map366.69NCBI
Pdlim5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554055,109,778 - 5,315,092 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554055,109,778 - 5,312,192 (+)NCBIChiLan1.0ChiLan1.0
PDLIM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2392,478,961 - 92,695,404 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1492,758,171 - 92,974,628 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0486,814,136 - 87,030,605 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1497,486,566 - 97,702,060 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl497,486,566 - 97,702,060 (+)Ensemblpanpan1.1panPan2
PDLIM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13217,294,023 - 17,505,212 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3217,294,073 - 17,502,409 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3224,444,240 - 24,655,897 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03217,472,836 - 17,683,974 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3217,472,845 - 17,683,970 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13217,445,268 - 17,656,838 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03217,266,060 - 17,477,973 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03222,414,982 - 22,632,647 (-)NCBIUU_Cfam_GSD_1.0
Pdlim5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530124,194,484 - 24,421,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366871,944,095 - 2,152,529 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366871,944,095 - 2,152,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDLIM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8125,044,028 - 125,259,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18125,044,027 - 125,259,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28134,331,215 - 134,558,541 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDLIM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1742,702,175 - 42,912,859 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl742,819,454 - 42,908,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603721,065,966 - 21,276,910 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdlim5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475722,332,505 - 22,597,586 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475722,332,479 - 22,597,312 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdlim5
923 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:11
Count of miRNA genes:11
Interacting mature miRNAs:11
Transcripts:ENSRNOT00000022387
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat

Markers in Region
D2Rat295  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22230,963,738 - 230,963,986 (+)MAPPERmRatBN7.2
Rnor_6.02247,826,701 - 247,826,948NCBIRnor6.0
Rnor_5.02266,357,209 - 266,357,456UniSTSRnor5.0
RGSC_v3.42240,185,760 - 240,186,008RGDRGSC3.4
RGSC_v3.42240,185,761 - 240,186,008UniSTSRGSC3.4
Celera2223,017,795 - 223,018,042UniSTS
RGSC_v3.12240,172,500 - 240,172,748RGD
SHRSP x BN Map298.7698RGD
SHRSP x BN Map298.7698UniSTS
Cytogenetic Map2q44UniSTS
RH129037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22231,019,248 - 231,019,438 (+)MAPPERmRatBN7.2
Rnor_6.02247,881,581 - 247,881,770NCBIRnor6.0
Rnor_5.02266,412,603 - 266,412,792UniSTSRnor5.0
RGSC_v3.42240,242,672 - 240,242,861UniSTSRGSC3.4
Celera2223,073,187 - 223,073,376UniSTS
Cytogenetic Map2q44UniSTS
RH132279  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22230,965,526 - 230,965,723 (+)MAPPERmRatBN7.2
Rnor_6.02247,828,489 - 247,828,685NCBIRnor6.0
Rnor_5.02266,358,997 - 266,359,193UniSTSRnor5.0
RGSC_v3.42240,187,549 - 240,187,745UniSTSRGSC3.4
Celera2223,019,583 - 223,019,779UniSTS
RH 3.4 Map21580.5UniSTS
Cytogenetic Map2q44UniSTS
RH144581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22230,965,009 - 230,965,164 (+)MAPPERmRatBN7.2
Rnor_6.02247,827,972 - 247,828,126NCBIRnor6.0
Rnor_5.02266,358,480 - 266,358,634UniSTSRnor5.0
RGSC_v3.42240,187,032 - 240,187,186UniSTSRGSC3.4
Celera2223,019,066 - 223,019,220UniSTS
RH 3.4 Map21580.8UniSTS
Cytogenetic Map2q44UniSTS
RH137910  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22231,074,716 - 231,074,966 (+)MAPPERmRatBN7.2
Rnor_6.02247,936,978 - 247,937,227NCBIRnor6.0
Rnor_5.02266,468,001 - 266,468,250UniSTSRnor5.0
RGSC_v3.42240,300,525 - 240,300,774UniSTSRGSC3.4
Celera2223,128,724 - 223,128,973UniSTS
RH 3.4 Map21537.0UniSTS
Cytogenetic Map2q44UniSTS
AI014024  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map21590.0UniSTS
Cytogenetic Map2q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U48247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022387   ⟹   ENSRNOP00000022387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,628,503 - 233,793,476 (-)Ensembl
mRatBN7.2 Ensembl2230,952,248 - 231,120,266 (-)Ensembl
Rnor_6.0 Ensembl2247,818,243 - 247,988,462 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095015   ⟹   ENSRNOP00000082394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,628,503 - 233,793,476 (-)Ensembl
mRatBN7.2 Ensembl2230,952,248 - 231,120,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097256   ⟹   ENSRNOP00000091194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,628,503 - 233,793,476 (-)Ensembl
mRatBN7.2 Ensembl2230,952,248 - 231,120,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106810   ⟹   ENSRNOP00000094742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,692,954 - 233,793,528 (-)Ensembl
mRatBN7.2 Ensembl2231,019,714 - 231,120,275 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109323   ⟹   ENSRNOP00000091918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,692,954 - 233,793,528 (-)Ensembl
mRatBN7.2 Ensembl2231,019,267 - 231,120,244 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114385   ⟹   ENSRNOP00000093276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,628,503 - 233,793,476 (-)Ensembl
mRatBN7.2 Ensembl2230,952,248 - 231,120,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115118   ⟹   ENSRNOP00000097787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,628,503 - 233,793,476 (-)Ensembl
mRatBN7.2 Ensembl2230,952,248 - 231,120,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115772   ⟹   ENSRNOP00000091892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2233,692,954 - 233,793,528 (-)Ensembl
mRatBN7.2 Ensembl2231,019,714 - 231,120,275 (-)Ensembl
RefSeq Acc Id: NM_053326   ⟹   NP_445778
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,628,501 - 233,793,476 (-)NCBI
mRatBN7.22230,955,276 - 231,120,223 (-)NCBI
Rnor_6.02247,818,241 - 247,988,462 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
RGSC_v3.42240,177,301 - 240,304,192 (-)RGD
Celera2223,009,335 - 223,173,420 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233412   ⟹   XP_006233474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
Rnor_6.02247,815,214 - 247,989,184 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233416   ⟹   XP_006233478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
Rnor_6.02247,815,214 - 247,989,176 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233418   ⟹   XP_006233480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
Rnor_6.02247,815,214 - 247,988,960 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233419   ⟹   XP_006233481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
Rnor_6.02247,815,214 - 247,988,946 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233420   ⟹   XP_006233482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,692,487 - 233,793,582 (-)NCBI
mRatBN7.22231,019,247 - 231,120,329 (-)NCBI
Rnor_6.02247,881,579 - 247,988,836 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233421   ⟹   XP_006233483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,692,487 - 233,793,582 (-)NCBI
mRatBN7.22231,019,247 - 231,120,329 (-)NCBI
Rnor_6.02247,881,579 - 247,988,836 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233422   ⟹   XP_006233484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,692,487 - 233,793,582 (-)NCBI
mRatBN7.22231,019,247 - 231,120,329 (-)NCBI
Rnor_6.02247,881,579 - 247,988,836 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233423   ⟹   XP_006233485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,692,487 - 233,793,582 (-)NCBI
mRatBN7.22231,019,247 - 231,120,329 (-)NCBI
Rnor_6.02247,881,579 - 247,988,836 (-)NCBI
Rnor_5.02266,345,722 - 266,518,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103049   ⟹   XP_038958977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103050   ⟹   XP_038958978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103051   ⟹   XP_038958979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103052   ⟹   XP_038958980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103053   ⟹   XP_038958981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103054   ⟹   XP_038958982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103055   ⟹   XP_038958983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103056   ⟹   XP_038958984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
mRatBN7.22230,952,251 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_039103057   ⟹   XP_038958985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,692,487 - 233,793,582 (-)NCBI
mRatBN7.22231,019,247 - 231,120,329 (-)NCBI
RefSeq Acc Id: XM_063282473   ⟹   XP_063138543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
RefSeq Acc Id: XM_063282474   ⟹   XP_063138544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
RefSeq Acc Id: XM_063282475   ⟹   XP_063138545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
RefSeq Acc Id: XM_063282477   ⟹   XP_063138547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
RefSeq Acc Id: XM_063282478   ⟹   XP_063138548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
RefSeq Acc Id: XM_063282480   ⟹   XP_063138550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82233,625,478 - 233,793,582 (-)NCBI
Protein Sequences
Protein RefSeqs NP_445778 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233474 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233478 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233480 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233481 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233482 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233483 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233484 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233485 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958977 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958981 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958982 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958983 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958984 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958985 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138543 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138544 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138545 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138547 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138548 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138550 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC72251 (Get FASTA)   NCBI Sequence Viewer  
  EDL82344 (Get FASTA)   NCBI Sequence Viewer  
  EDL82345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022387
  ENSRNOP00000091892
  ENSRNOP00000091918
  ENSRNOP00000093276
  ENSRNOP00000094742
  ENSRNOP00000097787
GenBank Protein Q62920 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445778   ⟸   NM_053326
- UniProtKB: Q62920 (UniProtKB/Swiss-Prot),   A6HW58 (UniProtKB/TrEMBL),   A0A8I6ARU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233481   ⟸   XM_006233419
- Peptide Label: isoform X16
- UniProtKB: A6HW57 (UniProtKB/TrEMBL),   A0A8I6GKL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233480   ⟸   XM_006233418
- Peptide Label: isoform X15
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233478   ⟸   XM_006233416
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QCL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233474   ⟸   XM_006233412
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233485   ⟸   XM_006233423
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_006233484   ⟸   XM_006233422
- Peptide Label: isoform X21
- UniProtKB: A0A8I6GJY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233483   ⟸   XM_006233421
- Peptide Label: isoform X20
- UniProtKB: A0A8I6B1G1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233482   ⟸   XM_006233420
- Peptide Label: isoform X19
- UniProtKB: A0A8I6GJC1 (UniProtKB/TrEMBL),   A6HW60 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022387   ⟸   ENSRNOT00000022387
RefSeq Acc Id: XP_038958984   ⟸   XM_039103056
- Peptide Label: isoform X14
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958983   ⟸   XM_039103055
- Peptide Label: isoform X12
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958982   ⟸   XM_039103054
- Peptide Label: isoform X11
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958981   ⟸   XM_039103053
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958980   ⟸   XM_039103052
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ARU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958978   ⟸   XM_039103050
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958977   ⟸   XM_039103049
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958979   ⟸   XM_039103051
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ARU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958985   ⟸   XM_039103057
- Peptide Label: isoform X18
- UniProtKB: A6HW60 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093276   ⟸   ENSRNOT00000114385
Ensembl Acc Id: ENSRNOP00000097787   ⟸   ENSRNOT00000115118
Ensembl Acc Id: ENSRNOP00000091194   ⟸   ENSRNOT00000097256
Ensembl Acc Id: ENSRNOP00000091892   ⟸   ENSRNOT00000115772
Ensembl Acc Id: ENSRNOP00000082394   ⟸   ENSRNOT00000095015
Ensembl Acc Id: ENSRNOP00000094742   ⟸   ENSRNOT00000106810
Ensembl Acc Id: ENSRNOP00000091918   ⟸   ENSRNOT00000109323
RefSeq Acc Id: XP_063138548   ⟸   XM_063282478
- Peptide Label: isoform X17
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138547   ⟸   XM_063282477
- Peptide Label: isoform X13
- UniProtKB: A0A8I6GKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138550   ⟸   XM_063282480
- Peptide Label: isoform X23
- UniProtKB: A0A8I6ADM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138543   ⟸   XM_063282473
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138545   ⟸   XM_063282475
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ARU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138544   ⟸   XM_063282474
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ARU2 (UniProtKB/TrEMBL)
Protein Domains
LIM zinc-binding   PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62920-F1-model_v2 AlphaFold Q62920 1-591 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691793
Promoter ID:EPDNEW_R2317
Type:initiation region
Name:Pdlim5_1
Description:PDZ and LIM domain 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02247,988,478 - 247,988,538EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621076 AgrOrtholog
BioCyc Gene G2FUF-51001 BioCyc
Ensembl Genes ENSRNOG00000016419 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022387 ENTREZGENE
  ENSRNOT00000106810 ENTREZGENE
  ENSRNOT00000109323 ENTREZGENE
  ENSRNOT00000114385 ENTREZGENE
  ENSRNOT00000115118 ENTREZGENE
  ENSRNOT00000115772 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot
  Cysteine Rich Protein UniProtKB/Swiss-Prot
InterPro PDZ UniProtKB/Swiss-Prot
  PDZ-LIM_domain UniProtKB/Swiss-Prot
  PDZ_sf UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
KEGG Report rno:64353 UniProtKB/Swiss-Prot
NCBI Gene 64353 ENTREZGENE
PANTHER PDZ AND LIM DOMAIN PROTEIN 5 UniProtKB/Swiss-Prot
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/Swiss-Prot
Pfam LIM UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
PhenoGen Pdlim5 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016419 RatGTEx
SMART LIM UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF50156 UniProtKB/Swiss-Prot
UniProt A0A8I6ADM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B1G1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G7D0_RAT UniProtKB/TrEMBL
  A0A8I6GJC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QCL7 ENTREZGENE, UniProtKB/TrEMBL
  A6HW57 ENTREZGENE, UniProtKB/TrEMBL
  A6HW58 ENTREZGENE, UniProtKB/TrEMBL
  A6HW60 ENTREZGENE, UniProtKB/TrEMBL
  PDLI5_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Pdlim5  PDZ and LIM domain 5  Enh  enigma homolog  Symbol and Name updated 1299863 APPROVED
2005-01-20 Enh  enigma homolog      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Enh  enigma homolog      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains three LIM domains with two zinc-finger motifs in each domain 632670
gene_drugs protein translocated from membrane fraction to cytosol on phorbol ester treatment 632670
gene_function phosphorylates protein kinase C by associating with the amino terminal region 632670