Pdlim5 (PDZ and LIM domain 5) - Rat Genome Database

Name: Pdlim5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pdlim5 (PDZ and LIM domain 5) Rattus norvegicus

Analyze

Symbol:

Pdlim5

Name:

PDZ and LIM domain 5

RGD ID:

621076

Description:

Enables cytoskeletal protein binding activity; protein N-terminus binding activity; and protein kinase C binding activity. Involved in cell growth involved in cardiac muscle cell development; regulation of dendritic spine morphogenesis; and regulation of synapse assembly. Located in cytosol; membrane; and postsynaptic density. Orthologous to human PDLIM5 (PDZ and LIM domain 5); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Enh; Enh1; enigma homolog; enigma-like PDZ and LIM domains protein; PDZ and LIM domain protein 5

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDLIM5 (PDZ and LIM domain 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pdlim5 (PDZ and LIM domain 5)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Pdlim5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDLIM5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDLIM5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdlim5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDLIM5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDLIM5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdlim5 (PDZ and LIM domain 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PDLIM5 (PDZ and LIM domain 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pdlim5 (PDZ and LIM domain 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdlim5a (PDZ and LIM domain 5a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdlim5b (PDZ and LIM domain 5b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	alp-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Zasp52	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,275 (-)	Ensembl
Rnor_6.0	2	247,815,214 - 247,989,198 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	247,818,243 - 247,988,462 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	240,177,301 - 240,304,192 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	240,164,042 - 240,283,654 (-)	NCBI
Celera	2	223,009,335 - 223,173,420 (-)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

dilated cardiomyopathy (ISS)

Myocardial Ischemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

aristolochic acid (ISO)

arsenous acid (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (EXP)

Brodifacoum (EXP)

butanal (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

corticosterone (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

disulfiram (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenamidone (ISO)

flavonoids (EXP)

folic acid (ISO)

gallic acid (ISO)

gentamycin (EXP)

haloperidol (ISO)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

irinotecan (ISO)

ivermectin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

lithium chloride (ISO)

melphalan (ISO)

methylmercury chloride (ISO)

N-acetyl-L-cysteine (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nickel atom (ISO)

nickel subsulfide (EXP)

nitrofen (EXP)

NS-398 (ISO)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium cyanide (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

succimer (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triclosan (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA)

cell growth involved in cardiac muscle cell development (IGI)

heart development (IBA,NAS)

muscle structure development (IBA)

regulation of dendritic spine morphogenesis (IDA)

regulation of synapse assembly (IDA)

Cellular Component

actin cytoskeleton (ISO)

adherens junction (IBA)

cell projection (IEA)

cytoplasm (ISO)

cytosol (IDA,TAS)

filamentous actin (IBA)

membrane (IDA)

postsynaptic density (IDA)

presynapse (IEA)

stress fiber (IBA)

Z disc (IBA,ISO)

Molecular Function

actin binding (IBA,IDA)

actinin binding (IDA)

metal ion binding (IEA)

muscle alpha-actinin binding (IBA)

protein binding (IPI,ISO)

protein kinase C binding (IDA)

protein N-terminus binding (IMP)

signaling receptor complex adaptor activity (NAS)

References

References - curated

#	Reference Title	Reference Citation
1.	Cardiac fibroblast-derived microRNA passenger strand-enriched exosomes mediate cardiomyocyte hypertrophy.	Bang C, etal., J Clin Invest. 2014 May;124(5):2136-46. doi: 10.1172/JCI70577. Epub 2014 Apr 17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Postsynaptic PDLIM5/Enigma Homolog binds SPAR and causes dendritic spine shrinkage.	Herrick S, etal., Mol Cell Neurosci. 2010 Feb;43(2):188-200. doi: 10.1016/j.mcn.2009.10.009. Epub 2009 Nov 10.
4.	Protein-protein interaction of zinc finger LIM domains with protein kinase C.	Kuroda S, etal., J Biol Chem 1996 Dec 6;271(49):31029-32.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	ENH, containing PDZ and LIM domains, heart/skeletal muscle-specific protein, associates with cytoskeletal proteins through the PDZ domain.	Nakagawa N, etal., Biochem Biophys Res Commun. 2000 Jun 7;272(2):505-12.
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12665800	PMID:16396499	PMID:16549780	PMID:18296710	PMID:20097676	PMID:21532576	PMID:22497889	PMID:25468996	PMID:25524223	PMID:26365342	PMID:27289039

Genomics

Comparative Map Data

Pdlim5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,275 (-)	Ensembl
Rnor_6.0	2	247,815,214 - 247,989,198 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	247,818,243 - 247,988,462 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	240,177,301 - 240,304,192 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	240,164,042 - 240,283,654 (-)	NCBI
Celera	2	223,009,335 - 223,173,420 (-)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

PDLIM5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	94,451,942 - 94,668,223 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	94,451,857 - 94,668,227 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	95,373,093 - 95,589,374 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	95,592,061 - 95,808,400 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	95,730,215 - 95,946,554	NCBI
Celera	4	92,670,285 - 92,886,273 (+)	NCBI
Cytogenetic Map	4	q22.3	NCBI
HuRef	4	91,110,743 - 91,326,816 (+)	NCBI		HuRef
CHM1_1	4	95,350,391 - 95,566,419 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	97,767,448 - 97,983,384 (+)	NCBI

Pdlim5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	141,945,346 - 142,101,480 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	141,945,351 - 142,101,457 (-)	Ensembl
GRCm38	3	142,239,585 - 142,395,719 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	142,239,590 - 142,395,696 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	141,903,568 - 142,058,630 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	142,180,044 - 142,333,004 (-)	NCBI			mm8
Celera	3	148,660,401 - 148,819,753 (-)	NCBI		Celera
Cytogenetic Map	3	H1	NCBI

Pdlim5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	5,109,778 - 5,315,092 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	5,109,778 - 5,312,192 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDLIM5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	97,486,566 - 97,702,060 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	97,486,566 - 97,702,060 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	86,814,136 - 87,030,605 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

PDLIM5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	17,294,023 - 17,505,212 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	17,294,073 - 17,502,409 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	24,444,240 - 24,655,897 (-)	NCBI
ROS_Cfam_1.0	32	17,472,836 - 17,683,974 (+)	NCBI
ROS_Cfam_1.0 Ensembl	32	17,472,845 - 17,683,970 (+)	Ensembl
UMICH_Zoey_3.1	32	17,445,268 - 17,656,838 (+)	NCBI
UNSW_CanFamBas_1.0	32	17,266,060 - 17,477,973 (+)	NCBI
UU_Cfam_GSD_1.0	32	22,414,982 - 22,632,647 (-)	NCBI

Pdlim5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	24,194,484 - 24,421,688 (-)	NCBI
SpeTri2.0	NW_004936687	1,944,095 - 2,152,501 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDLIM5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	125,044,028 - 125,259,948 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	125,044,027 - 125,259,969 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	134,331,215 - 134,558,541 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDLIM5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	42,702,175 - 42,912,859 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	7	42,819,454 - 42,908,137 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666037	21,065,966 - 21,276,910 (+)	NCBI	Vero_WHO_p1.0

Pdlim5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	22,332,505 - 22,597,586 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624757	22,332,479 - 22,597,312 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D2Rat295

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	230,963,738 - 230,963,986 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	247,826,701 - 247,826,948	NCBI	Rnor6.0
Rnor_5.0	2	266,357,209 - 266,357,456	UniSTS	Rnor5.0
RGSC_v3.4	2	240,185,760 - 240,186,008	RGD	RGSC3.4
RGSC_v3.4	2	240,185,761 - 240,186,008	UniSTS	RGSC3.4
RGSC_v3.1	2	240,172,500 - 240,172,748	RGD
Celera	2	223,017,795 - 223,018,042	UniSTS
SHRSP x BN Map	2	98.7698	RGD
SHRSP x BN Map	2	98.7698	UniSTS
Cytogenetic Map	2	q44	UniSTS

RH129037

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	231,019,248 - 231,019,438 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	247,881,581 - 247,881,770	NCBI	Rnor6.0
Rnor_5.0	2	266,412,603 - 266,412,792	UniSTS	Rnor5.0
RGSC_v3.4	2	240,242,672 - 240,242,861	UniSTS	RGSC3.4
Celera	2	223,073,187 - 223,073,376	UniSTS
Cytogenetic Map	2	q44	UniSTS

RH132279

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	230,965,526 - 230,965,723 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	247,828,489 - 247,828,685	NCBI	Rnor6.0
Rnor_5.0	2	266,358,997 - 266,359,193	UniSTS	Rnor5.0
RGSC_v3.4	2	240,187,549 - 240,187,745	UniSTS	RGSC3.4
Celera	2	223,019,583 - 223,019,779	UniSTS
RH 3.4 Map	2	1580.5	UniSTS
Cytogenetic Map	2	q44	UniSTS

RH144581

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	230,965,009 - 230,965,164 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	247,827,972 - 247,828,126	NCBI	Rnor6.0
Rnor_5.0	2	266,358,480 - 266,358,634	UniSTS	Rnor5.0
RGSC_v3.4	2	240,187,032 - 240,187,186	UniSTS	RGSC3.4
Celera	2	223,019,066 - 223,019,220	UniSTS
RH 3.4 Map	2	1580.8	UniSTS
Cytogenetic Map	2	q44	UniSTS

RH137910

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	231,074,716 - 231,074,966 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	247,936,978 - 247,937,227	NCBI	Rnor6.0
Rnor_5.0	2	266,468,001 - 266,468,250	UniSTS	Rnor5.0
RGSC_v3.4	2	240,300,525 - 240,300,774	UniSTS	RGSC3.4
Celera	2	223,128,724 - 223,128,973	UniSTS
RH 3.4 Map	2	1537.0	UniSTS
Cytogenetic Map	2	q44	UniSTS

AI014024

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	2	1590.0	UniSTS
Cytogenetic Map	2	q44	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	189599258	234599258	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	189599258	234599258	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	199341726	234244620	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	202446871	237938339	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	215377404	237938339	Rat
1331767	Hrtrt12	Heart rate QTL 12	3.373		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	218414747	240841241	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
9587428	Epfw6	Epididymal fat weight QTL 6	7.47	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	2	223389739	249053267	Rat
7411555	Bw132	Body weight QTL 132		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	223389739	249053267	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		hepatic copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	229059610	249053267	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	11
Count of miRNA genes:	11
Interacting mature miRNAs:	11
Transcripts:	ENSRNOT00000022387
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	48	32	19	32	8	11	72	35	34	11	8
Low			9	9		9			2		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U48247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000022387 ⟹ ENSRNOP00000022387

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,266 (-)	Ensembl
Rnor_6.0 Ensembl	2	247,818,243 - 247,988,462 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095015 ⟹ ENSRNOP00000082394

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,266 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097256 ⟹ ENSRNOP00000091194

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,266 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106810 ⟹ ENSRNOP00000094742

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	231,019,714 - 231,120,275 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109323 ⟹ ENSRNOP00000091918

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	231,019,267 - 231,120,244 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114385 ⟹ ENSRNOP00000093276

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,266 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115118 ⟹ ENSRNOP00000097787

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	230,952,248 - 231,120,266 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115772 ⟹ ENSRNOP00000091892

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	231,019,714 - 231,120,275 (-)	Ensembl

RefSeq Acc Id:

NM_053326 ⟹ NP_445778

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,955,276 - 231,120,223 (-)	NCBI
Rnor_6.0	2	247,818,241 - 247,988,462 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI
RGSC_v3.4	2	240,177,301 - 240,304,192 (-)	RGD
Celera	2	223,009,335 - 223,173,420 (-)	RGD

Sequence:

show sequence

CTGAGGCGGAGGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCGAACCATGAGC
AACTACAATGTGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATT
TCAACATGCCTCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGGCACACGTCAG
AATAGGCGATGTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCG
CAGAACAAGATTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTG
CCAAGTCTGAGCCAGTTGCTGTCCAGAAGGGGGAACCTAAGGAAGTAGTTAAGCCTGTGCCCAT
TACATCTCCTGCTGTATCCAAAGTCACTTCCACAACCAACATGGCTTACAATAAAGTGCCACGG
CCCTTTGGCTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCGCCATCGTCCGCCTTCACCC
CAGCCCATGCCGCCACGTCATCACACGCTTCCCCTCCACCTGTGGCTGCTGTCACTCCCCCTCC
ACTCTCTGCATCCGGACTGCATGCTAGTGCCAATCCTAGTGCTGCCCAGTGTTCGTCTCCACCA
AACACTGGTAAACCTGCAGTTCATGTCCCACGGCAGCCCACAGTCACCAGCGTGTGTTCCGAGT
CTGCTCAGGAGCTAGCAGAGGGACAGAGAAGAGGATCCCAGGGTGACATTAAACAGCAAAATGG
CCCACCAAGAAAACACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGAT
GCCAGCAAGAAAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGAACGACACAGT
CTCGTTCCTTCCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAATCTGAGAATGA
CAATGCGAAGAAGGCAAATAGCACTCCGGAGCCTTCTCAGCAGTCAGCTTCACCTCTGAGCGCG
GCGGAGAGCCTGGAGAGCCCAGGTTCAAACAGGCCAGTGGTGGCTGGCCTCAGGTCCGCTGCTG
CTTTCAAGCCTGTAGGATCCACCAGTGTCAAGTCACCAAGCTGGCAGCGTCCAAACCAAGCAGC
ACCTTCTACTGGGAGAATTTCAAACAGTGCAAGCTCTTCAGGTACAGGGGCACCCATGAAGCCA
GCTGTGGGGCCACCCCAGCCAAGTGACCAAGACACTCTTGTGCAGAGAGCTGAGCACATTCCGG
CGGGCAAGCGGACTCCCATGTGTGCCCACTGCAACCAGGCCATCAGGGGACCTTTTCTCGTGGC
TCTGGGGAAGTCCTGGCATCCAGAAGAATTCAACTGTGCTCACTGCAAAAACACGATGGCCTAT
ATAGGCTTTGTGGAGGAGAAGGGAGCACTGTATTGTGAGCTATGTTATGAGAAGTTCTTTGCTC
CTGAATGTGGCCGGTGCCAGAGGAAGATCCTTGGGGAAGTCATCAATGCTTTGAAGCAGACCTG
GCACGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATCCGTAATAATGTTTTCCACTTG
GAAGATGGCGAGCCCTACTGTGAGACAGACTATTATGCACTTTTTGGAACAATATGTCGCGGGT
GTGAATTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGCTCCACCTGGCATGACAC
TTGCTTTGTGTGCTCCGTGTGTTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGAC
AAGCCACTTTGCAAAAAACATGCTCATTCTGTGAATTTCTGAAAATCAACAGTTCCAGGAAAGA
GAAGAAATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233412 ⟹ XP_006233474

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,815,214 - 247,989,184 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

ACTAAACTTTACCAAAGTTTGCTTGTGAATAAAAATTCTTTGGGCAAAATCAAACAACTTTACA
GAAGTAGGTAAACGTGCTGTTGATTTGGAATTAGAAAAGTAAGCCGAGGATCGGTGGCTGAATC
ACTTTGCCTACTGCTTTGTGTGGCTGTCTTTTAGCTTGACGACAGATTTAACTTCTGCATATTA
GGGTTAGCGATTTTCACCTTCCTGACAAGCAAACTTCAGAGTTTGCACTTCTCGAGAGTATACA
GAGGTCTTTCACAAAAGCAGGCGGTAGTCGCTGAACTCGCTCCGACAGACAGAGATTTAGCTAA
AGCCCTTTTCTATTTTTAGCCAGACCAACTGCGGGTCAATTCAAGTTTCTGCGGGAGTGAAAAG
CGCCTAAATACAAAACAGAGAAGCGGAAGGCTAGATCTTTGCCGGGTACCACTCCAAGACTACA
CCCCGGAGACTACGCCCACCGAAACTCCACTCGGGGAATTGTTTTTGAGGCGGCTACAGCCGGC
CCCAGCAAGTCCCCGCGTACAACCCGGAGACTCCATTGCCTTCAAAGCCAGCAGCAGTGCGGCC
CCGCCCAGCCCGGACCAGGGGGTGTGGCCATCAGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGG
GCGGGTCGAGCGCGGAGGCGGAAGTTCCCCACCGGCTTGAGAGGGACGGCGCAGGCACCGCGAG
CCACTTGTCAGCGCTGGTCTGAGGCGGAGGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGA
ATCCTTCGAACCATGAGCAACTACAATGTGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGC
TCCAAGGTGGCAAGGATTTCAACATGCCTCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGC
ATCACAGGCACACGTCAGAATAGGCGATGTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGA
ATGACTCATCTCGAAGCGCAGAACAAGATTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGC
AAAGAGCTTCTGCTGCTGCCAAGTCTGAGCCAGTTGCTGTCCAGAAGGGGGAACCTAAGGAAGT
AGTTAAGCCTGTGCCCATTACATCTCCTGCTGTATCCAAAGTCACTTCCACAACCAACATGGCT
TACAATAAAGTGCCACGGCCCTTTGGCTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCGC
CATCGTCCGCCTTCACCCCAGCCCATGCCGCCACGTCATCACACGCTTCCCCTCCACCTGTGGC
TGCTGTCACTCCCCCTCCACTCTCTGCATCCGGACTGCATGCTAGTGCCAATCCTAGTGCTGCC
CAGTGTTCGTCTCCACCAAACACTGGTAAACCTGCAGTTCATGTCCCACGGCAGCCCACAGTCA
CCAGCGTGTGTTCCGAGTCCGCTCAGGAGCTAGCAGAGGGACAGAGAAGAGGATCCCAGGGTGA
CATTAAACAGCAAAATGGTAACCCTGGCACTGTGAAAATTCCACCCAAACGCCCACCAAGAAAA
CACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAAA
GGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGAACGACACAGTCTCGTTCCTTCCG
AATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAATCTGAGAATGACAATGCGAAGAAG
GCAAATAGCACTCCGGAGCCTTCTCAGCAGTCAGCTTCACCTCTGAGCGCGGCGGAGAGCCTGG
AGAGCCCAGGTTCAAACAGGCCAGTGGTGGCTGGCCTCAGGTCCGCTGCTGCTTTCAAGCCTGT
AGGATCCACCAGTGTCAAGTCACCAAGCTGGCAGCGTCCAAACCAAGCAGGTACCTCCATGAGG
AAATGTGGGGATGTCAGAAGCCAGCACACACAGATATGCTTTGGATCAAAAGCACCTTCTACTG
GGAGAATTTCAAACAGTGCAAGCTCTTCAGGTACAGGGGCACCCATGAAGCCAGCTGTGGGGCC
ACCCCAGCCAAGTGACCAAGACACTCTTGTGCAGAGAGCTGAGCACATTCCGGCGGGCAAGCGG
ACTCCCATGTGTGCCCACTGCAACCAGGCCATCAGGGGACCTTTTCTCGTGGCTCTGGGGAAGT
CCTGGCATCCAGAAGAATTCAACTGTGCTCACTGCAAAAACACGATGGCCTATATAGGCTTTGT
GGAGGAGAAGGGAGCACTGTATTGTGAGCTATGTTATGAGAAGTTCTTTGCTCCTGAATGTGGC
CGGTGCCAGAGGAAGATCCTTGGGGAAGTCATCAATGCTTTGAAGCAGACCTGGCACGTGTCCT
GTTTTGTGTGTGTGGCCTGTGGAAAACCCATCCGTAATAATGTTTTCCACTTGGAAGATGGCGA
GCCCTACTGTGAGACAGACTATTATGCACTTTTTGGAACAATATGTCGCGGGTGTGAATTCCCC
ATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGCTCCACCTGGCATGACACTTGCTTTGTGT
GCTCCGTGTGCTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGACAAGCCACTTTG
CAAAAAACATGCTCATTCTGTGAATTTCTGAAAATCAACAGTTCCAGGAAAGAGAAGAAATTTG
AAGAAAAAGGAGGAAAATTAAAATTACCATTTAATTTTTAGTTTTAATATTTATACGGAGTTCT
AAAATAATAATAATAGCCCTGAAGGGATAAACTCAAACATTAAAAATCAAATCTGAGAAAACGT
TTGCCTTCAGAAAGTCACAGAGTTTGGCATTTGTCATTCCTTGCCAGTATTTTCTGCCCATGAA
AATCAATTTATAAAAATCAATTTCCTGGCTATTAAGTTCATCTTAGAATAAATCAGCAAAGGAT
TACATTTTTAGAATTAAAATCTCTAGCCTCTATGCTGAAATGATACTTTTGAGGTGGTAGCTAT
GAGAATCCACAGAAGGCAATAAAAGTGCCTTAAACCTTACTAACAAGAATAATAGTTTAATAAA
CCCATTTTATCTTTGGAGTAGTAAGTAGAAGTTTAAATAAATTTCAAGAGTAGGCAGTCTCTTT
TTCTGTTCAGCGTATGTGCTTGCTTTGGTCTTATCATTCGTCTTACCTTTAGTAAGATGGAAAT
TCTTGATCAATGCGTATGATGCCAGTAAGAGATTCTGTGATCTCTCCTGTTCTCCCAGAGGCTG
CCATGTTGCTTAAGGTCACAGACGCTGACCCCTCTTCAGATAGAGCAGGTCGTTTGCATTGTGC
ATGGCTGCCTGGTCTAGACGGCCGTGCTTGCCGTCTCTTAGGCTGAAGATATTTCAGTATCCTT
GGACTCTGATAGTCCTGTCTCCTTTTTAGAAAGGAGTAGGTAGAAGATAAGGAATTAGGGAAAT
GAAGCAATTGTAAGCAGAAACTTAAAAGAACTGTTTCCCGCCTTCAGATGATGAGCTGACTGAC
TTGCACAGCTATGTCTCTCACTGAAGATTCGAAAATGCCTTGCCCAGTAATTTTTCTTTTTTTT
TTTTGGATTGAGGGTTATGATTGATAAAATCCAACTAAATATTGTTACTGTGTTTTTTGCTCAT
TTAAAATTGTTCTGGGATTTTGTTTCTTGTTTTTCATTTGGGATTCTTTTCTATCAGTAAGTAA
ATCCCCTCCAGCTGTGTGATCACTGAGTTAGACAACTTTGGTTCTCTGGTGTTCGGTGGTAAGG
AGGAATCATGATGCAGTTCTCACATTCCCCTGTCATCTGTTCCTCACGAGTGGGTAGAGTATCC
TGCAGGGCACTGCTTATAGTCAGGACAGGGACTGGAAGACAGCCGTGCAGCGTGGTTCACTCCC
CAGGGAAAAAACAAATGACGGCATTTTGTATTTTTCTTATTGTTTCTACAATGAATAAAAGCCC
AAGATCCTGCTGAGTTATAGCTTAAATCTGTGGGGACAAGGTGCTTTTAGAATCCAGATAGAGT
TCCCAGGGTCCTGCTGCCCCATCACTCAAGTGCACTTGTACATCCCGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAACTACAGTATTTGTTTAACCTCACTAAG
AACTTTCAAGGCATCTGTCCTGAAAGCTGCTAGTCTATGATCTAGTAAATGTGTACTACATGAA
GATAGTAATGGACTGGGACATAAGCGAACAGCAAGGGTGACACCACATTGCAAACCGAAAGCTT
CTCCTGTAGCAGCCCAGGTTACCTCCTCACCTGTGCTTGTGGGAAGGCAGGAAGTGTTTTTGAA
AGTCAGTGCTGGAACTTGATACATTAGGTCTCTCTGCTGCTGCACTGATCAGTACCAGACTTGA
TGGCTCATGTGCGTTAGTTCAGATCTGAATGTCAGGCTTTGGCTTTATACGACAAAATGAGTGG
GTGATTTTGTTTTGATGTGGTAGTTTTGTTTTGTCTCTTAGATGCTGTGCAAAGATAATATTCA
AAAACTCATTGGCATTTGTATATTCAAAGACTTGTCTTCAACTTGGATTTCTTATAGAAGTATT
GTTCTCTAAGATATCATTTTAATTAAGTCTTTACTTCTGTGAGTTACTTGTAGAGCATAATGCT
GCCTTTTATAATGCTGTATTTCTCTGAATTTAATCTGTAAAAGGCTAGCACGTCCTATTAATTT
GGCATTGTGTCTTTATTCTTTGCTGCCTGGTTTATGGCAAATTTTATATCCATTCCTAAAAAGT
GAACTCTGGGAAAATGAGCTCTCACCATAACCAGATCTGTCTGTAGTGGGGATTGGCTTGTCTC
GTTTACCAGCGTGGGTCTTTAGCTACCTGGCACAGTGCTTTACCCTCTGACAAGCTCCCTGGGT
ATTTATGGCTTCTGTGTCAGTAGCATTTTTTTTTTTCACTACTTTCACCTACAAACGCTGAGCT
TTCCTCCTGCTGGATGTATGTTTCGAAGGCTGTACTCGATAAACTCCAGATGGAATCCATGGTG
CAAGACTTTACATCCCTCATTCGATTTCACGTTGTCCAGATTTTTACGGGCCCAGATTGATTGT
TTCTCTGTTGTCCTGTCTGACTGTTGCCAGTCAAGGTAGTAACCTGCTTGTGTTCCTGTGACTC
CGTGCTTCCCCTTGGTAAGGTTACCTTCCCCATGTAAAAACTGAAGCCTAATTATTTGGCCATG
GTATTAAAACAAAAGTAACCATTTGTTCACAAAGAGTTTGTAAACAAAATCCTTTGAATATTGA
TATAAAACTATGTTTAAAATGATCTATGACAAAATGTACTCTTTCCAAGGAGCTTCCATAGAAA
AGTCATTACTGCAGTGTGAATTCAGTGCAGCATTAATGTTCTTCGGCATTTGCAGTTCAGTCAT
CTCCATGATGCAGAGGAAACCATGAGACAGTCTTACACAAATGTATTGCGTCCTGCCCCTCACC
TCCAAATGCTTAAGGTATTGGACTCTTATGTGTAATGTGCCGAACCTGTCCATGCTGTCTTTTC
TTTCTTCACCTTTTAAAGTCTGTGTACAGCTGCTCTTTTGCTTTTGGATATATTTTTAATTAAA
AAAAAATCACATGAGAAATGTAATCTGTGTAGTGATGCTGTAATGAGCATATACTCAATAAACA
ACTGCCATAATGTCGACAGCA

hide sequence

RefSeq Acc Id:

XM_006233416 ⟹ XP_006233478

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,815,214 - 247,989,176 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

TTACCAAAGTTTGCTTGTGAATAAAAATTCTTTGGGCAAAATCAAACAACTTTACAGAAGTAGG
TAAACGTGCTGTTGATTTGGAATTAGAAAAGTAAGCCGAGGATCGGTGGCTGAATCACTTTGCC
TACTGCTTTGTGTGGCTGTCTTTTAGCTTGACGACAGATTTAACTTCTGCATATTAGGGTTAGC
GATTTTCACCTTCCTGACAAGCAAACTTCAGAGTTTGCACTTCTCGAGAGTATACAGAGGTCTT
TCACAAAAGCAGGCGGTAGTCGCTGAACTCGCTCCGACAGACAGAGATTTAGCTAAAGCCCTTT
TCTATTTTTAGCCAGACCAACTGCGGGTCAATTCAAGTTTCTGCGGGAGTGAAAAGCGCCTAAA
TACAAAACAGAGAAGCGGAAGGCTAGATCTTTGCCGGGTACCACTCCAAGACTACACCCCGGAG
ACTACGCCCACCGAAACTCCACTCGGGGAATTGTTTTTGAGGCGGCTACAGCCGGCCCCAGCAA
GTCCCCGCGTACAACCCGGAGACTCCATTGCCTTCAAAGCCAGCAGCAGTGCGGCCCCGCCCAG
CCCGGACCAGGGGGTGTGGCCATCAGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGGGCGGGTCG
AGCGCGGAGGCGGAAGTTCCCCACCGGCTTGAGAGGGACGGCGCAGGCACCGCGAGCCACTTGT
CAGCGCTGGTCTGAGGCGGAGGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCG
AACCATGAGCAACTACAATGTGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGT
GGCAAGGATTTCAACATGCCTCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGG
CACACGTCAGAATAGGCGATGTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCA
TCTCGAAGCGCAGAACAAGATTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCT
TCTGCTGCTGCCAAGTCTGAGCCAGTTGCTGTCCAGAAGGGGGAACCTAAGGAAGTAGTTAAGC
CTGTGCCCATTACATCTCCTGCTGTATCCAAAGTCACTTCCACAACCAACATGGCTTACAATAA
AGTGCCACGGCCCTTTGGCTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCGCCATCGTCC
GCCTTCACCCCAGCCCATGCCGCCACGTCATCACACGCTTCCCCTCCACCTGTGGCTGCTGTCA
CTCCCCCTCCACTCTCTGCATCCGGACTGCATGCTAGTGCCAATCCTAGTGCTGCCCAGTGTTC
GTCTCCACCAAACACTGGTAAACCTGCAGTTCATGTCCCACGGCAGCCCACAGTCACCAGCGTG
TGTTCCGAGTCCGCTCAGGAGCTAGCAGAGGGACAGAGAAGAGGATCCCAGGGTGACATTAAAC
AGCAAAATGGCCCACCAAGAAAACACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCAC
TCACAGTGATGCCAGCAAGAAAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGA
ACGACACAGTCTCGTTCCTTCCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAAT
CTGAGAATGACAATGCGAAGAAGGCAAATAGCACTCCGGAGCCTTCTCAGCAGTCAGCTTCACC
TCTGAGCGCGGCGGAGAGCCTGGAGAGCCCAGGTTCAAACAGGCCAGTGGTGGCTGGCCTCAGG
TCCGCTGCTGCTTTCAAGCCTGTAGGATCCACCAGTGTCAAGTCACCAAGCTGGCAGCGTCCAA
ACCAAGCAGGTACCTCCATGAGGAAATGTGGGGATGTCAGAAGCCAGCACACACAGATATGCTT
TGGATCAAAAGCACCTTCTACTGGGAGAATTTCAAACAGTGCAAGCTCTTCAGGTACAGGGGCA
CCCATGAAGCCAGCTGTGGGGCCACCCCAGCCAAGTGACCAAGACACTCTTGTGCAGAGAGCTG
AGCACATTCCGGCGGGCAAGCGGACTCCCATGTGTGCCCACTGCAACCAGGCCATCAGGGGACC
TTTTCTCGTGGCTCTGGGGAAGTCCTGGCATCCAGAAGAATTCAACTGTGCTCACTGCAAAAAC
ACGATGGCCTATATAGGCTTTGTGGAGGAGAAGGGAGCACTGTATTGTGAGCTATGTTATGAGA
AGTTCTTTGCTCCTGAATGTGGCCGGTGCCAGAGGAAGATCCTTGGGGAAGTCATCAATGCTTT
GAAGCAGACCTGGCACGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATCCGTAATAAT
GTTTTCCACTTGGAAGATGGCGAGCCCTACTGTGAGACAGACTATTATGCACTTTTTGGAACAA
TATGTCGCGGGTGTGAATTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGCTCCAC
CTGGCATGACACTTGCTTTGTGTGCTCCGTGTGCTGTGAAAGTTTGGAAGGGCAGACATTTTTC
TCCAAGAAGGACAAGCCACTTTGCAAAAAACATGCTCATTCTGTGAATTTCTGAAAATCAACAG
TTCCAGGAAAGAGAAGAAATTTGAAGAAAAAGGAGGAAAATTAAAATTACCATTTAATTTTTAG
TTTTAATATTTATACGGAGTTCTAAAATAATAATAATAGCCCTGAAGGGATAAACTCAAACATT
AAAAATCAAATCTGAGAAAACGTTTGCCTTCAGAAAGTCACAGAGTTTGGCATTTGTCATTCCT
TGCCAGTATTTTCTGCCCATGAAAATCAATTTATAAAAATCAATTTCCTGGCTATTAAGTTCAT
CTTAGAATAAATCAGCAAAGGATTACATTTTTAGAATTAAAATCTCTAGCCTCTATGCTGAAAT
GATACTTTTGAGGTGGTAGCTATGAGAATCCACAGAAGGCAATAAAAGTGCCTTAAACCTTACT
AACAAGAATAATAGTTTAATAAACCCATTTTATCTTTGGAGTAGTAAGTAGAAGTTTAAATAAA
TTTCAAGAGTAGGCAGTCTCTTTTTCTGTTCAGCGTATGTGCTTGCTTTGGTCTTATCATTCGT
CTTACCTTTAGTAAGATGGAAATTCTTGATCAATGCGTATGATGCCAGTAAGAGATTCTGTGAT
CTCTCCTGTTCTCCCAGAGGCTGCCATGTTGCTTAAGGTCACAGACGCTGACCCCTCTTCAGAT
AGAGCAGGTCGTTTGCATTGTGCATGGCTGCCTGGTCTAGACGGCCGTGCTTGCCGTCTCTTAG
GCTGAAGATATTTCAGTATCCTTGGACTCTGATAGTCCTGTCTCCTTTTTAGAAAGGAGTAGGT
AGAAGATAAGGAATTAGGGAAATGAAGCAATTGTAAGCAGAAACTTAAAAGAACTGTTTCCCGC
CTTCAGATGATGAGCTGACTGACTTGCACAGCTATGTCTCTCACTGAAGATTCGAAAATGCCTT
GCCCAGTAATTTTTCTTTTTTTTTTTTGGATTGAGGGTTATGATTGATAAAATCCAACTAAATA
TTGTTACTGTGTTTTTTGCTCATTTAAAATTGTTCTGGGATTTTGTTTCTTGTTTTTCATTTGG
GATTCTTTTCTATCAGTAAGTAAATCCCCTCCAGCTGTGTGATCACTGAGTTAGACAACTTTGG
TTCTCTGGTGTTCGGTGGTAAGGAGGAATCATGATGCAGTTCTCACATTCCCCTGTCATCTGTT
CCTCACGAGTGGGTAGAGTATCCTGCAGGGCACTGCTTATAGTCAGGACAGGGACTGGAAGACA
GCCGTGCAGCGTGGTTCACTCCCCAGGGAAAAAACAAATGACGGCATTTTGTATTTTTCTTATT
GTTTCTACAATGAATAAAAGCCCAAGATCCTGCTGAGTTATAGCTTAAATCTGTGGGGACAAGG
TGCTTTTAGAATCCAGATAGAGTTCCCAGGGTCCTGCTGCCCCATCACTCAAGTGCACTTGTAC
ATCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAACTAC
AGTATTTGTTTAACCTCACTAAGAACTTTCAAGGCATCTGTCCTGAAAGCTGCTAGTCTATGAT
CTAGTAAATGTGTACTACATGAAGATAGTAATGGACTGGGACATAAGCGAACAGCAAGGGTGAC
ACCACATTGCAAACCGAAAGCTTCTCCTGTAGCAGCCCAGGTTACCTCCTCACCTGTGCTTGTG
GGAAGGCAGGAAGTGTTTTTGAAAGTCAGTGCTGGAACTTGATACATTAGGTCTCTCTGCTGCT
GCACTGATCAGTACCAGACTTGATGGCTCATGTGCGTTAGTTCAGATCTGAATGTCAGGCTTTG
GCTTTATACGACAAAATGAGTGGGTGATTTTGTTTTGATGTGGTAGTTTTGTTTTGTCTCTTAG
ATGCTGTGCAAAGATAATATTCAAAAACTCATTGGCATTTGTATATTCAAAGACTTGTCTTCAA
CTTGGATTTCTTATAGAAGTATTGTTCTCTAAGATATCATTTTAATTAAGTCTTTACTTCTGTG
AGTTACTTGTAGAGCATAATGCTGCCTTTTATAATGCTGTATTTCTCTGAATTTAATCTGTAAA
AGGCTAGCACGTCCTATTAATTTGGCATTGTGTCTTTATTCTTTGCTGCCTGGTTTATGGCAAA
TTTTATATCCATTCCTAAAAAGTGAACTCTGGGAAAATGAGCTCTCACCATAACCAGATCTGTC
TGTAGTGGGGATTGGCTTGTCTCGTTTACCAGCGTGGGTCTTTAGCTACCTGGCACAGTGCTTT
ACCCTCTGACAAGCTCCCTGGGTATTTATGGCTTCTGTGTCAGTAGCATTTTTTTTTTTCACTA
CTTTCACCTACAAACGCTGAGCTTTCCTCCTGCTGGATGTATGTTTCGAAGGCTGTACTCGATA
AACTCCAGATGGAATCCATGGTGCAAGACTTTACATCCCTCATTCGATTTCACGTTGTCCAGAT
TTTTACGGGCCCAGATTGATTGTTTCTCTGTTGTCCTGTCTGACTGTTGCCAGTCAAGGTAGTA
ACCTGCTTGTGTTCCTGTGACTCCGTGCTTCCCCTTGGTAAGGTTACCTTCCCCATGTAAAAAC
TGAAGCCTAATTATTTGGCCATGGTATTAAAACAAAAGTAACCATTTGTTCACAAAGAGTTTGT
AAACAAAATCCTTTGAATATTGATATAAAACTATGTTTAAAATGATCTATGACAAAATGTACTC
TTTCCAAGGAGCTTCCATAGAAAAGTCATTACTGCAGTGTGAATTCAGTGCAGCATTAATGTTC
TTCGGCATTTGCAGTTCAGTCATCTCCATGATGCAGAGGAAACCATGAGACAGTCTTACACAAA
TGTATTGCGTCCTGCCCCTCACCTCCAAATGCTTAAGGTATTGGACTCTTATGTGTAATGTGCC
GAACCTGTCCATGCTGTCTTTTCTTTCTTCACCTTTTAAAGTCTGTGTACAGCTGCTCTTTTGC
TTTTGGATATATTTTTAATTAAAAAAAAATCACATGAGAAATGTAATCTGTGTAGTGATGCTGT
AATGAGCATATACTCAATAAACAACTGCCATAATGTCGACAGCA

hide sequence

RefSeq Acc Id:

XM_006233418 ⟹ XP_006233480

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,815,214 - 247,988,960 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

ACTTCAGAGTTTGCACTTCTCGAGAGTATACAGAGGTCTTTCACAAAAGCAGGCGGTAGTCGCT
GAACTCGCTCCGACAGACAGAGATTTAGCTAAAGCCCTTTTCTATTTTTAGCCAGACCAACTGC
GGGTCAATTCAAGTTTCTGCGGGAGTGAAAAGCGCCTAAATACAAAACAGAGAAGCGGAAGGCT
AGATCTTTGCCGGGTACCACTCCAAGACTACACCCCGGAGACTACGCCCACCGAAACTCCACTC
GGGGAATTGTTTTTGAGGCGGCTACAGCCGGCCCCAGCAAGTCCCCGCGTACAACCCGGAGACT
CCATTGCCTTCAAAGCCAGCAGCAGTGCGGCCCCGCCCAGCCCGGACCAGGGGGTGTGGCCATC
AGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGGGCGGGTCGAGCGCGGAGGCGGAAGTTCCCCAC
CGGCTTGAGAGGGACGGCGCAGGCACCGCGAGCCACTTGTCAGCGCTGGTCTGAGGCGGAGGGT
GCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCGAACCATGAGCAACTACAATGTGTC
ATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAACATGCCTCTG
ACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGGCACACGTCAGAATAGGCGATGTGG
TTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCGCAGAACAAGATTAA
GGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTGCCAAGTCTGAGCCA
GTTGCTGTCCAGAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCCGCTCAGGAGCTAGCAGAGG
GACAGAGAAGAGGATCCCAGGGTGACATTAAACAGCAAAATGGGAAAATTCCACCCAAACGCCC
ACCAAGAAAACACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGATGCC
AGCAAGAAAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGAACGACACAGTCTC
GTTCCTTCCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAATCTGAGAATGACAA
TGCGAAGAAGGCAAATAGCACTCCGGAGCCTTCTCAGCAGTCAGCTTCACCTCTGAGCGCGGCG
GAGAGCCTGGAGAGCCCAGGTTCAAACAGGCCAGTGGTGGCTGGCCTCAGGTCCGCTGCTGCTT
TCAAGCCTGTAGGATCCACCAGTGTCAAGTCACCAAGCTGGCAGCGTCCAAACCAAGCAGCACC
TTCTACTGGGAGAATTTCAAACAGTGCAAGCTCTTCAGGTACAGGGGCACCCATGAAGCCAGCT
GTGGGGCCACCCCAGCCAAGTGACCAAGACACTCTTGTGCAGAGAGCTGAGCACATTCCGGCGG
GCAAGCGGACTCCCATGTGTGCCCACTGCAACCAGGCCATCAGGGGACCTTTTCTCGTGGCTCT
GGGGAAGTCCTGGCATCCAGAAGAATTCAACTGTGCTCACTGCAAAAACACGATGGCCTATATA
GGCTTTGTGGAGGAGAAGGGAGCACTGTATTGTGAGCTATGTTATGAGAAGTTCTTTGCTCCTG
AATGTGGCCGGTGCCAGAGGAAGATCCTTGGGGAAGTCATCAATGCTTTGAAGCAGACCTGGCA
CGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATCCGTAATAATGTTTTCCACTTGGAA
GATGGCGAGCCCTACTGTGAGACAGACTATTATGCACTTTTTGGAACAATATGTCGCGGGTGTG
AATTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGCTCCACCTGGCATGACACTTG
CTTTGTGTGCTCCGTGTGCTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGACAAG
CCACTTTGCAAAAAACATGCTCATTCTGTGAATTTCTGAAAATCAACAGTTCCAGGAAAGAGAA
GAAATTTGAAGAAAAAGGAGGAAAATTAAAATTACCATTTAATTTTTAGTTTTAATATTTATAC
GGAGTTCTAAAATAATAATAATAGCCCTGAAGGGATAAACTCAAACATTAAAAATCAAATCTGA
GAAAACGTTTGCCTTCAGAAAGTCACAGAGTTTGGCATTTGTCATTCCTTGCCAGTATTTTCTG
CCCATGAAAATCAATTTATAAAAATCAATTTCCTGGCTATTAAGTTCATCTTAGAATAAATCAG
CAAAGGATTACATTTTTAGAATTAAAATCTCTAGCCTCTATGCTGAAATGATACTTTTGAGGTG
GTAGCTATGAGAATCCACAGAAGGCAATAAAAGTGCCTTAAACCTTACTAACAAGAATAATAGT
TTAATAAACCCATTTTATCTTTGGAGTAGTAAGTAGAAGTTTAAATAAATTTCAAGAGTAGGCA
GTCTCTTTTTCTGTTCAGCGTATGTGCTTGCTTTGGTCTTATCATTCGTCTTACCTTTAGTAAG
ATGGAAATTCTTGATCAATGCGTATGATGCCAGTAAGAGATTCTGTGATCTCTCCTGTTCTCCC
AGAGGCTGCCATGTTGCTTAAGGTCACAGACGCTGACCCCTCTTCAGATAGAGCAGGTCGTTTG
CATTGTGCATGGCTGCCTGGTCTAGACGGCCGTGCTTGCCGTCTCTTAGGCTGAAGATATTTCA
GTATCCTTGGACTCTGATAGTCCTGTCTCCTTTTTAGAAAGGAGTAGGTAGAAGATAAGGAATT
AGGGAAATGAAGCAATTGTAAGCAGAAACTTAAAAGAACTGTTTCCCGCCTTCAGATGATGAGC
TGACTGACTTGCACAGCTATGTCTCTCACTGAAGATTCGAAAATGCCTTGCCCAGTAATTTTTC
TTTTTTTTTTTTGGATTGAGGGTTATGATTGATAAAATCCAACTAAATATTGTTACTGTGTTTT
TTGCTCATTTAAAATTGTTCTGGGATTTTGTTTCTTGTTTTTCATTTGGGATTCTTTTCTATCA
GTAAGTAAATCCCCTCCAGCTGTGTGATCACTGAGTTAGACAACTTTGGTTCTCTGGTGTTCGG
TGGTAAGGAGGAATCATGATGCAGTTCTCACATTCCCCTGTCATCTGTTCCTCACGAGTGGGTA
GAGTATCCTGCAGGGCACTGCTTATAGTCAGGACAGGGACTGGAAGACAGCCGTGCAGCGTGGT
TCACTCCCCAGGGAAAAAACAAATGACGGCATTTTGTATTTTTCTTATTGTTTCTACAATGAAT
AAAAGCCCAAGATCCTGCTGAGTTATAGCTTAAATCTGTGGGGACAAGGTGCTTTTAGAATCCA
GATAGAGTTCCCAGGGTCCTGCTGCCCCATCACTCAAGTGCACTTGTACATCCCGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAACTACAGTATTTGTTTAACC
TCACTAAGAACTTTCAAGGCATCTGTCCTGAAAGCTGCTAGTCTATGATCTAGTAAATGTGTAC
TACATGAAGATAGTAATGGACTGGGACATAAGCGAACAGCAAGGGTGACACCACATTGCAAACC
GAAAGCTTCTCCTGTAGCAGCCCAGGTTACCTCCTCACCTGTGCTTGTGGGAAGGCAGGAAGTG
TTTTTGAAAGTCAGTGCTGGAACTTGATACATTAGGTCTCTCTGCTGCTGCACTGATCAGTACC
AGACTTGATGGCTCATGTGCGTTAGTTCAGATCTGAATGTCAGGCTTTGGCTTTATACGACAAA
ATGAGTGGGTGATTTTGTTTTGATGTGGTAGTTTTGTTTTGTCTCTTAGATGCTGTGCAAAGAT
AATATTCAAAAACTCATTGGCATTTGTATATTCAAAGACTTGTCTTCAACTTGGATTTCTTATA
GAAGTATTGTTCTCTAAGATATCATTTTAATTAAGTCTTTACTTCTGTGAGTTACTTGTAGAGC
ATAATGCTGCCTTTTATAATGCTGTATTTCTCTGAATTTAATCTGTAAAAGGCTAGCACGTCCT
ATTAATTTGGCATTGTGTCTTTATTCTTTGCTGCCTGGTTTATGGCAAATTTTATATCCATTCC
TAAAAAGTGAACTCTGGGAAAATGAGCTCTCACCATAACCAGATCTGTCTGTAGTGGGGATTGG
CTTGTCTCGTTTACCAGCGTGGGTCTTTAGCTACCTGGCACAGTGCTTTACCCTCTGACAAGCT
CCCTGGGTATTTATGGCTTCTGTGTCAGTAGCATTTTTTTTTTTCACTACTTTCACCTACAAAC
GCTGAGCTTTCCTCCTGCTGGATGTATGTTTCGAAGGCTGTACTCGATAAACTCCAGATGGAAT
CCATGGTGCAAGACTTTACATCCCTCATTCGATTTCACGTTGTCCAGATTTTTACGGGCCCAGA
TTGATTGTTTCTCTGTTGTCCTGTCTGACTGTTGCCAGTCAAGGTAGTAACCTGCTTGTGTTCC
TGTGACTCCGTGCTTCCCCTTGGTAAGGTTACCTTCCCCATGTAAAAACTGAAGCCTAATTATT
TGGCCATGGTATTAAAACAAAAGTAACCATTTGTTCACAAAGAGTTTGTAAACAAAATCCTTTG
AATATTGATATAAAACTATGTTTAAAATGATCTATGACAAAATGTACTCTTTCCAAGGAGCTTC
CATAGAAAAGTCATTACTGCAGTGTGAATTCAGTGCAGCATTAATGTTCTTCGGCATTTGCAGT
TCAGTCATCTCCATGATGCAGAGGAAACCATGAGACAGTCTTACACAAATGTATTGCGTCCTGC
CCCTCACCTCCAAATGCTTAAGGTATTGGACTCTTATGTGTAATGTGCCGAACCTGTCCATGCT
GTCTTTTCTTTCTTCACCTTTTAAAGTCTGTGTACAGCTGCTCTTTTGCTTTTGGATATATTTT
TAATTAAAAAAAAATCACATGAGAAATGTAATCTGTGTAGTGATGCTGTAATGAGCATATACTC
AATAAACAACTGCCATAATGTCGACAGCA

hide sequence

RefSeq Acc Id:

XM_006233419 ⟹ XP_006233481

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,815,214 - 247,988,946 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

ACTTCTCGAGAGTATACAGAGGTCTTTCACAAAAGCAGGCGGTAGTCGCTGAACTCGCTCCGAC
AGACAGAGATTTAGCTAAAGCCCTTTTCTATTTTTAGCCAGACCAACTGCGGGTCAATTCAAGT
TTCTGCGGGAGTGAAAAGCGCCTAAATACAAAACAGAGAAGCGGAAGGCTAGATCTTTGCCGGG
TACCACTCCAAGACTACACCCCGGAGACTACGCCCACCGAAACTCCACTCGGGGAATTGTTTTT
GAGGCGGCTACAGCCGGCCCCAGCAAGTCCCCGCGTACAACCCGGAGACTCCATTGCCTTCAAA
GCCAGCAGCAGTGCGGCCCCGCCCAGCCCGGACCAGGGGGTGTGGCCATCAGAGAAGGGGCGTG
CCCAGCCTTGGGCGCGGGGCGGGTCGAGCGCGGAGGCGGAAGTTCCCCACCGGCTTGAGAGGGA
CGGCGCAGGCACCGCGAGCCACTTGTCAGCGCTGGTCTGAGGCGGAGGGTGCGCCGCGCGGGTC
CGGAGAACTGCACATCGAATCCTTCGAACCATGAGCAACTACAATGTGTCATTGGTTGGCCCAG
CTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAACATGCCTCTGACAATCTCTAGTCT
GAAAGATGGTGGCAAGGCATCACAGGCACACGTCAGAATAGGCGATGTGGTTCTCAGCATTGAT
GGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCGCAGAACAAGATTAAGGCTTGTACAGGCT
CCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTGCCAAGTCTGAGCCAGTTGCTGTCCAGAA
GCCCACAGTCACCAGCGTGTGTTCCGAGTCCGCTCAGGAGCTAGCAGAGGGACAGAGAAGAGGA
TCCCAGGGTGACATTAAACAGCAAAATGGCCCACCAAGAAAACACATCGTGGAGCGCAACACGG
AGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAAAGGCTGATTGAGGACACTGAGGA
CTGGCGCCCACGGACTGGAACGACACAGTCTCGTTCCTTCCGAATCCTCGCCCAGATCACTGGG
ACTGAGCATTTGAAAGAATCTGAGAATGACAATGCGAAGAAGGCAAATAGCACTCCGGAGCCTT
CTCAGCAGTCAGCTTCACCTCTGAGCGCGGCGGAGAGCCTGGAGAGCCCAGGTTCAAACAGGCC
AGTGGTGGCTGGCCTCAGGTCCGCTGCTGCTTTCAAGCCTGTAGGATCCACCAGTGTCAAGTCA
CCAAGCTGGCAGCGTCCAAACCAAGCAGCACCTTCTACTGGGAGAATTTCAAACAGTGCAAGCT
CTTCAGGTACAGGGGCACCCATGAAGCCAGCTGTGGGGCCACCCCAGCCAAGTGACCAAGACAC
TCTTGTGCAGAGAGCTGAGCACATTCCGGCGGGCAAGCGGACTCCCATGTGTGCCCACTGCAAC
CAGGCCATCAGGGGACCTTTTCTCGTGGCTCTGGGGAAGTCCTGGCATCCAGAAGAATTCAACT
GTGCTCACTGCAAAAACACGATGGCCTATATAGGCTTTGTGGAGGAGAAGGGAGCACTGTATTG
TGAGCTATGTTATGAGAAGTTCTTTGCTCCTGAATGTGGCCGGTGCCAGAGGAAGATCCTTGGG
GAAGTCATCAATGCTTTGAAGCAGACCTGGCACGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAA
AACCCATCCGTAATAATGTTTTCCACTTGGAAGATGGCGAGCCCTACTGTGAGACAGACTATTA
TGCACTTTTTGGAACAATATGTCGCGGGTGTGAATTCCCCATAGAGGCTGGTGACATGTTCCTG
GAAGCTCTGGGCTCCACCTGGCATGACACTTGCTTTGTGTGCTCCGTGTGCTGTGAAAGTTTGG
AAGGGCAGACATTTTTCTCCAAGAAGGACAAGCCACTTTGCAAAAAACATGCTCATTCTGTGAA
TTTCTGAAAATCAACAGTTCCAGGAAAGAGAAGAAATTTGAAGAAAAAGGAGGAAAATTAAAAT
TACCATTTAATTTTTAGTTTTAATATTTATACGGAGTTCTAAAATAATAATAATAGCCCTGAAG
GGATAAACTCAAACATTAAAAATCAAATCTGAGAAAACGTTTGCCTTCAGAAAGTCACAGAGTT
TGGCATTTGTCATTCCTTGCCAGTATTTTCTGCCCATGAAAATCAATTTATAAAAATCAATTTC
CTGGCTATTAAGTTCATCTTAGAATAAATCAGCAAAGGATTACATTTTTAGAATTAAAATCTCT
AGCCTCTATGCTGAAATGATACTTTTGAGGTGGTAGCTATGAGAATCCACAGAAGGCAATAAAA
GTGCCTTAAACCTTACTAACAAGAATAATAGTTTAATAAACCCATTTTATCTTTGGAGTAGTAA
GTAGAAGTTTAAATAAATTTCAAGAGTAGGCAGTCTCTTTTTCTGTTCAGCGTATGTGCTTGCT
TTGGTCTTATCATTCGTCTTACCTTTAGTAAGATGGAAATTCTTGATCAATGCGTATGATGCCA
GTAAGAGATTCTGTGATCTCTCCTGTTCTCCCAGAGGCTGCCATGTTGCTTAAGGTCACAGACG
CTGACCCCTCTTCAGATAGAGCAGGTCGTTTGCATTGTGCATGGCTGCCTGGTCTAGACGGCCG
TGCTTGCCGTCTCTTAGGCTGAAGATATTTCAGTATCCTTGGACTCTGATAGTCCTGTCTCCTT
TTTAGAAAGGAGTAGGTAGAAGATAAGGAATTAGGGAAATGAAGCAATTGTAAGCAGAAACTTA
AAAGAACTGTTTCCCGCCTTCAGATGATGAGCTGACTGACTTGCACAGCTATGTCTCTCACTGA
AGATTCGAAAATGCCTTGCCCAGTAATTTTTCTTTTTTTTTTTTGGATTGAGGGTTATGATTGA
TAAAATCCAACTAAATATTGTTACTGTGTTTTTTGCTCATTTAAAATTGTTCTGGGATTTTGTT
TCTTGTTTTTCATTTGGGATTCTTTTCTATCAGTAAGTAAATCCCCTCCAGCTGTGTGATCACT
GAGTTAGACAACTTTGGTTCTCTGGTGTTCGGTGGTAAGGAGGAATCATGATGCAGTTCTCACA
TTCCCCTGTCATCTGTTCCTCACGAGTGGGTAGAGTATCCTGCAGGGCACTGCTTATAGTCAGG
ACAGGGACTGGAAGACAGCCGTGCAGCGTGGTTCACTCCCCAGGGAAAAAACAAATGACGGCAT
TTTGTATTTTTCTTATTGTTTCTACAATGAATAAAAGCCCAAGATCCTGCTGAGTTATAGCTTA
AATCTGTGGGGACAAGGTGCTTTTAGAATCCAGATAGAGTTCCCAGGGTCCTGCTGCCCCATCA
CTCAAGTGCACTTGTACATCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTCTTAACTACAGTATTTGTTTAACCTCACTAAGAACTTTCAAGGCATCTGTCCTGAA
AGCTGCTAGTCTATGATCTAGTAAATGTGTACTACATGAAGATAGTAATGGACTGGGACATAAG
CGAACAGCAAGGGTGACACCACATTGCAAACCGAAAGCTTCTCCTGTAGCAGCCCAGGTTACCT
CCTCACCTGTGCTTGTGGGAAGGCAGGAAGTGTTTTTGAAAGTCAGTGCTGGAACTTGATACAT
TAGGTCTCTCTGCTGCTGCACTGATCAGTACCAGACTTGATGGCTCATGTGCGTTAGTTCAGAT
CTGAATGTCAGGCTTTGGCTTTATACGACAAAATGAGTGGGTGATTTTGTTTTGATGTGGTAGT
TTTGTTTTGTCTCTTAGATGCTGTGCAAAGATAATATTCAAAAACTCATTGGCATTTGTATATT
CAAAGACTTGTCTTCAACTTGGATTTCTTATAGAAGTATTGTTCTCTAAGATATCATTTTAATT
AAGTCTTTACTTCTGTGAGTTACTTGTAGAGCATAATGCTGCCTTTTATAATGCTGTATTTCTC
TGAATTTAATCTGTAAAAGGCTAGCACGTCCTATTAATTTGGCATTGTGTCTTTATTCTTTGCT
GCCTGGTTTATGGCAAATTTTATATCCATTCCTAAAAAGTGAACTCTGGGAAAATGAGCTCTCA
CCATAACCAGATCTGTCTGTAGTGGGGATTGGCTTGTCTCGTTTACCAGCGTGGGTCTTTAGCT
ACCTGGCACAGTGCTTTACCCTCTGACAAGCTCCCTGGGTATTTATGGCTTCTGTGTCAGTAGC
ATTTTTTTTTTTCACTACTTTCACCTACAAACGCTGAGCTTTCCTCCTGCTGGATGTATGTTTC
GAAGGCTGTACTCGATAAACTCCAGATGGAATCCATGGTGCAAGACTTTACATCCCTCATTCGA
TTTCACGTTGTCCAGATTTTTACGGGCCCAGATTGATTGTTTCTCTGTTGTCCTGTCTGACTGT
TGCCAGTCAAGGTAGTAACCTGCTTGTGTTCCTGTGACTCCGTGCTTCCCCTTGGTAAGGTTAC
CTTCCCCATGTAAAAACTGAAGCCTAATTATTTGGCCATGGTATTAAAACAAAAGTAACCATTT
GTTCACAAAGAGTTTGTAAACAAAATCCTTTGAATATTGATATAAAACTATGTTTAAAATGATC
TATGACAAAATGTACTCTTTCCAAGGAGCTTCCATAGAAAAGTCATTACTGCAGTGTGAATTCA
GTGCAGCATTAATGTTCTTCGGCATTTGCAGTTCAGTCATCTCCATGATGCAGAGGAAACCATG
AGACAGTCTTACACAAATGTATTGCGTCCTGCCCCTCACCTCCAAATGCTTAAGGTATTGGACT
CTTATGTGTAATGTGCCGAACCTGTCCATGCTGTCTTTTCTTTCTTCACCTTTTAAAGTCTGTG
TACAGCTGCTCTTTTGCTTTTGGATATATTTTTAATTAAAAAAAAATCACATGAGAAATGTAAT
CTGTGTAGTGATGCTGTAATGAGCATATACTCAATAAACAACTGCCATAATGTCGACAGCA

hide sequence

RefSeq Acc Id:

XM_006233420 ⟹ XP_006233482

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	231,019,247 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,881,579 - 247,988,836 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

CTGCGGGTCAATTCAAGTTTCTGCGGGAGTGAAAAGCGCCTAAATACAAAACAGAGAAGCGGAA
GGCTAGATCTTTGCCGGGTACCACTCCAAGACTACACCCCGGAGACTACGCCCACCGAAACTCC
ACTCGGGGAATTGTTTTTGAGGCGGCTACAGCCGGCCCCAGCAAGTCCCCGCGTACAACCCGGA
GACTCCATTGCCTTCAAAGCCAGCAGCAGTGCGGCCCCGCCCAGCCCGGACCAGGGGGTGTGGC
CATCAGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGGGCGGGTCGAGCGCGGAGGCGGAAGTTCC
CCACCGGCTTGAGAGGGACGGCGCAGGCACCGCGAGCCACTTGTCAGCGCTGGTCTGAGGCGGA
GGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCGAACCATGAGCAACTACAATG
TGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAACATGCC
TCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGGCACACGTCAGAATAGGCGAT
GTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCGCAGAACAAGA
TTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTGCCAAGTCTGA
GCCAGTTGCTGTCCAGAAGGGGGAACCTAAGGAAGTAGTTAAGCCTGTGCCCATTACATCTCCT
GCTGTATCCAAAGTCACTTCCACAACCAACATGGCTTACAATAAAGTGCCACGGCCCTTTGGCT
CTGTGTCTTCACCAAAAGTCACATCCATCCCATCGCCATCGTCCGCCTTCACCCCAGCCCATGC
CGCCACGTCATCACACGCTTCCCCTCCACCTGTGGCTGCTGTCACTCCCCCTCCACTCTCTGCA
TCCGGACTGCATGCTAGTGCCAATCCTAGTGCTGCCCAGTGTTCGTCTCCACCAAACACTGGTA
AACCTGCAGTTCATGTCCCACGGCAGCCCACAGTCACCAGCGTGTGTTCCGAGTCCGCTCAGGA
GCTAGCAGAGGGACAGAGAAGAGGATCCCAGGGTGACATTAAACAGCAAAATGGCCCACCAAGA
AAACACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGA
AAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGAACGACACAGTCTCGTTCCTT
CCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAATCTGAGAATGACAATGCGAAG
AAGGCAAAGGAAAAGATACCCCTTCACGTCTTTAGTCCCAAATACACAAAATTACGTGACTGGC
ACCATGAAGTTTCAGCACGTGCTCTTAATGTACAGTGACTCTGAGCCTTGCTCCCCCACCTAAG
CAGCTGGCACATACCTCTCATTCACATTTTCTTTCTTCCATCTCATAGCAAAATCTGTTTTACA
TTTGACTCGTGAAAACTAGAACAATTGGTGTGCTTTCCTAACAATTTCCAGTTGTGAAACTCAG
AAGACTGAATATGCTGTGTCCTAATCAGTAGCTCACAAATACAAAACCAAAGGATGGAAAGGCC
TGACCCCTTCAGTGTATTTACACCTAGTCTCACTGCCCCAGTCATGACCTTGGTACAGGCCGTC
TGTTTGCAGGGTTGGTTGGTGGAAGCAGAGGTAGATGAACAAACAGTGTCCTTGTCCAATTGGG
AAGTGAGCCCCTTAGGCTGTTACATTTCCTCAGTTTACTTTCAGGTTCATCATTAAGGAACGCT
CAAAGTTGACTGTAAATTCTCCCAAGACAGCAAACATGGGAAGGCAGATTCAGCACAGACGACT
AGTAGAGCTCATCGTAGACCTAGGCGATTGAAAAACTGTACTGTTTAGGCGACTATCAAAACAA
AACAAAACAACAACAGAAAAATATTTTACCCTTGCTTGCAGTGGGGAAACAGTATTCTTTTACT
TTAGTTAATTTTAAAGATCCTGTTATCTACTAAAGGAAGTATATATAAGGCAGTGGATGTTTTC
ATGCTTTACACAACTTTTAGGTGCCAACAGTAAGACATGTAGAAGATAGCTTTGTTGCTTCTTT
ATATTGGAGGAAAATGGATAAAATCAGTTTCAGTTTAAATGTTTATGATACTGGGGAGATATTT
TTGGGGTTATAAACTACTGTGCGTGTTGTTGCTGCTGTTCTTACAAAGATATATTTTGGGCAGT
ATAGGGAAATGCAATATATCTGATTATAAATGCCTTCTGCCTTGTAATTTAATATGTTATATAT
TAGATCTAACCTTGGTAATAAATGCACTTTGACGTTTGGAGAGAATTGTAATAAAGTTGTCTGC
ACCTCTGCTCTA

hide sequence

RefSeq Acc Id:

XM_006233421 ⟹ XP_006233483

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	231,019,247 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,881,579 - 247,988,836 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

CTGCGGGTCAATTCAAGTTTCTGCGGGAGTGAAAAGCGCCTAAATACAAAACAGAGAAGCGGAA
GGCTAGATCTTTGCCGGGTACCACTCCAAGACTACACCCCGGAGACTACGCCCACCGAAACTCC
ACTCGGGGAATTGTTTTTGAGGCGGCTACAGCCGGCCCCAGCAAGTCCCCGCGTACAACCCGGA
GACTCCATTGCCTTCAAAGCCAGCAGCAGTGCGGCCCCGCCCAGCCCGGACCAGGGGGTGTGGC
CATCAGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGGGCGGGTCGAGCGCGGAGGCGGAAGTTCC
CCACCGGCTTGAGAGGGACGGCGCAGGCACCGCGAGCCACTTGTCAGCGCTGGTCTGAGGCGGA
GGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCGAACCATGAGCAACTACAATG
TGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAACATGCC
TCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGGCACACGTCAGAATAGGCGAT
GTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCGCAGAACAAGA
TTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTGCCAAGTCTGA
GCCAGTTGCTGTCCAGAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCCGCTCAGGAGCTAGCA
GAGGGACAGAGAAGAGGATCCCAGGGTGACATTAAACAGCAAAATGGTAACCCTGGCACTGTGA
AAATTCCACCCAAACGCCCACCAAGAAAACACATCGTGGAGCGCAACACGGAGTTTTATCACAT
ACCCACTCACAGTGATGCCAGCAAGAAAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGG
ACTGGAACGACACAGTCTCGTTCCTTCCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGA
AAGAATCTGAGAATGACAATGCGAAGAAGGCAAAGGAAAAGATACCCCTTCACGTCTTTAGTCC
CAAATACACAAAATTACGTGACTGGCACCATGAAGTTTCAGCACGTGCTCTTAATGTACAGTGA
CTCTGAGCCTTGCTCCCCCACCTAAGCAGCTGGCACATACCTCTCATTCACATTTTCTTTCTTC
CATCTCATAGCAAAATCTGTTTTACATTTGACTCGTGAAAACTAGAACAATTGGTGTGCTTTCC
TAACAATTTCCAGTTGTGAAACTCAGAAGACTGAATATGCTGTGTCCTAATCAGTAGCTCACAA
ATACAAAACCAAAGGATGGAAAGGCCTGACCCCTTCAGTGTATTTACACCTAGTCTCACTGCCC
CAGTCATGACCTTGGTACAGGCCGTCTGTTTGCAGGGTTGGTTGGTGGAAGCAGAGGTAGATGA
ACAAACAGTGTCCTTGTCCAATTGGGAAGTGAGCCCCTTAGGCTGTTACATTTCCTCAGTTTAC
TTTCAGGTTCATCATTAAGGAACGCTCAAAGTTGACTGTAAATTCTCCCAAGACAGCAAACATG
GGAAGGCAGATTCAGCACAGACGACTAGTAGAGCTCATCGTAGACCTAGGCGATTGAAAAACTG
TACTGTTTAGGCGACTATCAAAACAAAACAAAACAACAACAGAAAAATATTTTACCCTTGCTTG
CAGTGGGGAAACAGTATTCTTTTACTTTAGTTAATTTTAAAGATCCTGTTATCTACTAAAGGAA
GTATATATAAGGCAGTGGATGTTTTCATGCTTTACACAACTTTTAGGTGCCAACAGTAAGACAT
GTAGAAGATAGCTTTGTTGCTTCTTTATATTGGAGGAAAATGGATAAAATCAGTTTCAGTTTAA
ATGTTTATGATACTGGGGAGATATTTTTGGGGTTATAAACTACTGTGCGTGTTGTTGCTGCTGT
TCTTACAAAGATATATTTTGGGCAGTATAGGGAAATGCAATATATCTGATTATAAATGCCTTCT
GCCTTGTAATTTAATATGTTATATATTAGATCTAACCTTGGTAATAAATGCACTTTGACGTTTG
GAGAGAATTGTAATAAAGTTGTCTGCACCTCTGCTCTA

hide sequence

RefSeq Acc Id:

XM_006233422 ⟹ XP_006233484

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	231,019,247 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,881,579 - 247,988,836 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

CTGCGGGTCAATTCAAGTTTCTGCGGGAGTGAAAAGCGCCTAAATACAAAACAGAGAAGCGGAA
GGCTAGATCTTTGCCGGGTACCACTCCAAGACTACACCCCGGAGACTACGCCCACCGAAACTCC
ACTCGGGGAATTGTTTTTGAGGCGGCTACAGCCGGCCCCAGCAAGTCCCCGCGTACAACCCGGA
GACTCCATTGCCTTCAAAGCCAGCAGCAGTGCGGCCCCGCCCAGCCCGGACCAGGGGGTGTGGC
CATCAGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGGGCGGGTCGAGCGCGGAGGCGGAAGTTCC
CCACCGGCTTGAGAGGGACGGCGCAGGCACCGCGAGCCACTTGTCAGCGCTGGTCTGAGGCGGA
GGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCGAACCATGAGCAACTACAATG
TGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAACATGCC
TCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGGCACACGTCAGAATAGGCGAT
GTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCGCAGAACAAGA
TTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTGCCAAGTCTGA
GCCAGTTGCTGTCCAGAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCCGCTCAGGAGCTAGCA
GAGGGACAGAGAAGAGGATCCCAGGGTGACATTAAACAGCAAAATGGGAAAATTCCACCCAAAC
GCCCACCAAGAAAACACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGA
TGCCAGCAAGAAAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGAACGACACAG
TCTCGTTCCTTCCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAATCTGAGAATG
ACAATGCGAAGAAGGCAAAGGAAAAGATACCCCTTCACGTCTTTAGTCCCAAATACACAAAATT
ACGTGACTGGCACCATGAAGTTTCAGCACGTGCTCTTAATGTACAGTGACTCTGAGCCTTGCTC
CCCCACCTAAGCAGCTGGCACATACCTCTCATTCACATTTTCTTTCTTCCATCTCATAGCAAAA
TCTGTTTTACATTTGACTCGTGAAAACTAGAACAATTGGTGTGCTTTCCTAACAATTTCCAGTT
GTGAAACTCAGAAGACTGAATATGCTGTGTCCTAATCAGTAGCTCACAAATACAAAACCAAAGG
ATGGAAAGGCCTGACCCCTTCAGTGTATTTACACCTAGTCTCACTGCCCCAGTCATGACCTTGG
TACAGGCCGTCTGTTTGCAGGGTTGGTTGGTGGAAGCAGAGGTAGATGAACAAACAGTGTCCTT
GTCCAATTGGGAAGTGAGCCCCTTAGGCTGTTACATTTCCTCAGTTTACTTTCAGGTTCATCAT
TAAGGAACGCTCAAAGTTGACTGTAAATTCTCCCAAGACAGCAAACATGGGAAGGCAGATTCAG
CACAGACGACTAGTAGAGCTCATCGTAGACCTAGGCGATTGAAAAACTGTACTGTTTAGGCGAC
TATCAAAACAAAACAAAACAACAACAGAAAAATATTTTACCCTTGCTTGCAGTGGGGAAACAGT
ATTCTTTTACTTTAGTTAATTTTAAAGATCCTGTTATCTACTAAAGGAAGTATATATAAGGCAG
TGGATGTTTTCATGCTTTACACAACTTTTAGGTGCCAACAGTAAGACATGTAGAAGATAGCTTT
GTTGCTTCTTTATATTGGAGGAAAATGGATAAAATCAGTTTCAGTTTAAATGTTTATGATACTG
GGGAGATATTTTTGGGGTTATAAACTACTGTGCGTGTTGTTGCTGCTGTTCTTACAAAGATATA
TTTTGGGCAGTATAGGGAAATGCAATATATCTGATTATAAATGCCTTCTGCCTTGTAATTTAAT
ATGTTATATATTAGATCTAACCTTGGTAATAAATGCACTTTGACGTTTGGAGAGAATTGTAATA
AAGTTGTCTGCACCTCTGCTCTA

hide sequence

RefSeq Acc Id:

XM_006233423 ⟹ XP_006233485

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	231,019,247 - 231,120,329 (-)	NCBI
Rnor_6.0	2	247,881,579 - 247,988,836 (-)	NCBI
Rnor_5.0	2	266,345,722 - 266,518,817 (-)	NCBI

Sequence:

show sequence

CTGCGGGTCAATTCAAGTTTCTGCGGGAGTGAAAAGCGCCTAAATACAAAACAGAGAAGCGGAA
GGCTAGATCTTTGCCGGGTACCACTCCAAGACTACACCCCGGAGACTACGCCCACCGAAACTCC
ACTCGGGGAATTGTTTTTGAGGCGGCTACAGCCGGCCCCAGCAAGTCCCCGCGTACAACCCGGA
GACTCCATTGCCTTCAAAGCCAGCAGCAGTGCGGCCCCGCCCAGCCCGGACCAGGGGGTGTGGC
CATCAGAGAAGGGGCGTGCCCAGCCTTGGGCGCGGGGCGGGTCGAGCGCGGAGGCGGAAGTTCC
CCACCGGCTTGAGAGGGACGGCGCAGGCACCGCGAGCCACTTGTCAGCGCTGGTCTGAGGCGGA
GGGTGCGCCGCGCGGGTCCGGAGAACTGCACATCGAATCCTTCGAACCATGAGCAACTACAATG
TGTCATTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAACATGCC
TCTGACAATCTCTAGTCTGAAAGATGGTGGCAAGGCATCACAGGCACACGTCAGAATAGGCGAT
GTGGTTCTCAGCATTGATGGAATCAGTGCCCAGGGAATGACTCATCTCGAAGCGCAGAACAAGA
TTAAGGCTTGTACAGGCTCCTTGAATATGACTCTGCAAAGAGCTTCTGCTGCTGCCAAGTCTGA
GCCAGTTGCTGTCCAGAAGAAAGCACACGTGACAAATAACCCTGGCACTGTGAAAATTCCACCC
AAACGCCCACCAAGAAAACACATCGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACA
GTGATGCCAGCAAGAAAAGGCTGATTGAGGACACTGAGGACTGGCGCCCACGGACTGGAACGAC
ACAGTCTCGTTCCTTCCGAATCCTCGCCCAGATCACTGGGACTGAGCATTTGAAAGAATCTGAG
AATGACAATGCGAAGAAGGCAAAGGAAAAGATACCCCTTCACGTCTTTAGTCCCAAATACACAA
AATTACGTGACTGGCACCATGAAGTTTCAGCACGTGCTCTTAATGTACAGTGACTCTGAGCCTT
GCTCCCCCACCTAAGCAGCTGGCACATACCTCTCATTCACATTTTCTTTCTTCCATCTCATAGC
AAAATCTGTTTTACATTTGACTCGTGAAAACTAGAACAATTGGTGTGCTTTCCTAACAATTTCC
AGTTGTGAAACTCAGAAGACTGAATATGCTGTGTCCTAATCAGTAGCTCACAAATACAAAACCA
AAGGATGGAAAGGCCTGACCCCTTCAGTGTATTTACACCTAGTCTCACTGCCCCAGTCATGACC
TTGGTACAGGCCGTCTGTTTGCAGGGTTGGTTGGTGGAAGCAGAGGTAGATGAACAAACAGTGT
CCTTGTCCAATTGGGAAGTGAGCCCCTTAGGCTGTTACATTTCCTCAGTTTACTTTCAGGTTCA
TCATTAAGGAACGCTCAAAGTTGACTGTAAATTCTCCCAAGACAGCAAACATGGGAAGGCAGAT
TCAGCACAGACGACTAGTAGAGCTCATCGTAGACCTAGGCGATTGAAAAACTGTACTGTTTAGG
CGACTATCAAAACAAAACAAAACAACAACAGAAAAATATTTTACCCTTGCTTGCAGTGGGGAAA
CAGTATTCTTTTACTTTAGTTAATTTTAAAGATCCTGTTATCTACTAAAGGAAGTATATATAAG
GCAGTGGATGTTTTCATGCTTTACACAACTTTTAGGTGCCAACAGTAAGACATGTAGAAGATAG
CTTTGTTGCTTCTTTATATTGGAGGAAAATGGATAAAATCAGTTTCAGTTTAAATGTTTATGAT
ACTGGGGAGATATTTTTGGGGTTATAAACTACTGTGCGTGTTGTTGCTGCTGTTCTTACAAAGA
TATATTTTGGGCAGTATAGGGAAATGCAATATATCTGATTATAAATGCCTTCTGCCTTGTAATT
TAATATGTTATATATTAGATCTAACCTTGGTAATAAATGCACTTTGACGTTTGGAGAGAATTGT
AATAAAGTTGTCTGCACCTCTGCTCTA

hide sequence

RefSeq Acc Id:

XM_039103049 ⟹ XP_038958977

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103050 ⟹ XP_038958978

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103051 ⟹ XP_038958979

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103052 ⟹ XP_038958980

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103053 ⟹ XP_038958981

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103054 ⟹ XP_038958982

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103055 ⟹ XP_038958983

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103056 ⟹ XP_038958984

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	230,952,251 - 231,120,329 (-)	NCBI

RefSeq Acc Id:

XM_039103057 ⟹ XP_038958985

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	231,019,247 - 231,120,329 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_445778	(Get FASTA)	NCBI Sequence Viewer
	XP_006233474	(Get FASTA)	NCBI Sequence Viewer
	XP_006233478	(Get FASTA)	NCBI Sequence Viewer
	XP_006233480	(Get FASTA)	NCBI Sequence Viewer
	XP_006233481	(Get FASTA)	NCBI Sequence Viewer
	XP_006233482	(Get FASTA)	NCBI Sequence Viewer
	XP_006233483	(Get FASTA)	NCBI Sequence Viewer
	XP_006233484	(Get FASTA)	NCBI Sequence Viewer
	XP_006233485	(Get FASTA)	NCBI Sequence Viewer
	XP_038958977	(Get FASTA)	NCBI Sequence Viewer
	XP_038958978	(Get FASTA)	NCBI Sequence Viewer
	XP_038958979	(Get FASTA)	NCBI Sequence Viewer
	XP_038958980	(Get FASTA)	NCBI Sequence Viewer
	XP_038958981	(Get FASTA)	NCBI Sequence Viewer
	XP_038958982	(Get FASTA)	NCBI Sequence Viewer
	XP_038958983	(Get FASTA)	NCBI Sequence Viewer
	XP_038958984	(Get FASTA)	NCBI Sequence Viewer
	XP_038958985	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC72251	(Get FASTA)	NCBI Sequence Viewer
	EDL82344	(Get FASTA)	NCBI Sequence Viewer
	EDL82345	(Get FASTA)	NCBI Sequence Viewer
	Q62920	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_445778 ⟸ NM_053326

- UniProtKB:

Q62920 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKGEPKEVVKPVPITSPAVSKVTSTTNMAYNKV
PRPFGSVSSPKVTSIPSPSSAFTPAHAATSSHASPPPVAAVTPPPLSASGLHASANPSAAQCSS
PPNTGKPAVHVPRQPTVTSVCSESAQELAEGQRRGSQGDIKQQNGPPRKHIVERNTEFYHIPTH
SDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESENDNAKKANSTPEPSQQSASPL
SAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSPSWQRPNQAAPSTGRISNSASSSGTGAPM
KPAVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQAIRGPFLVALGKSWHPEEFNCAHCKNTM
AYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF
HLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSK
KDKPLCKKHAHSVNF

hide sequence

RefSeq Acc Id:	XP_006233481 ⟸ XM_006233419
- Peptide Label:	isoform X12
- UniProtKB:	Q62920 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKPTVTSVCSESAQELAEGQRRGSQGDIKQQNG PPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESEND NAKKANSTPEPSQQSASPLSAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSPSWQRPNQAA PSTGRISNSASSSGTGAPMKPAVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQAIRGPFLVA LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALKQTW HVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDT CFVCSVCCESLEGQTFFSKKDKPLCKKHAHSVNF hide sequence

RefSeq Acc Id:

XP_006233480 ⟸ XM_006233418

- Peptide Label:

isoform X11

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKPTVTSVCSESAQELAEGQRRGSQGDIKQQNG
KIPPKRPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHL
KESENDNAKKANSTPEPSQQSASPLSAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSPSWQ
RPNQAAPSTGRISNSASSSGTGAPMKPAVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQAIR
GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVIN
ALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALG
STWHDTCFVCSVCCESLEGQTFFSKKDKPLCKKHAHSVNF

hide sequence

RefSeq Acc Id:

XP_006233478 ⟸ XM_006233416

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKGEPKEVVKPVPITSPAVSKVTSTTNMAYNKV
PRPFGSVSSPKVTSIPSPSSAFTPAHAATSSHASPPPVAAVTPPPLSASGLHASANPSAAQCSS
PPNTGKPAVHVPRQPTVTSVCSESAQELAEGQRRGSQGDIKQQNGPPRKHIVERNTEFYHIPTH
SDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESENDNAKKANSTPEPSQQSASPL
SAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSPSWQRPNQAGTSMRKCGDVRSQHTQICFG
SKAPSTGRISNSASSSGTGAPMKPAVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQAIRGPF
LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALK
QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTW
HDTCFVCSVCCESLEGQTFFSKKDKPLCKKHAHSVNF

hide sequence

RefSeq Acc Id:

XP_006233474 ⟸ XM_006233412

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKGEPKEVVKPVPITSPAVSKVTSTTNMAYNKV
PRPFGSVSSPKVTSIPSPSSAFTPAHAATSSHASPPPVAAVTPPPLSASGLHASANPSAAQCSS
PPNTGKPAVHVPRQPTVTSVCSESAQELAEGQRRGSQGDIKQQNGNPGTVKIPPKRPPRKHIVE
RNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESENDNAKKANST
PEPSQQSASPLSAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSPSWQRPNQAGTSMRKCGD
VRSQHTQICFGSKAPSTGRISNSASSSGTGAPMKPAVGPPQPSDQDTLVQRAEHIPAGKRTPMC
AHCNQAIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQR
KILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAG
DMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKKHAHSVNF

hide sequence

RefSeq Acc Id:

XP_006233485 ⟸ XM_006233423

- Peptide Label:

isoform X17

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKKAHVTNNPGTVKIPPKRPPRKHIVERNTEFY
HIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESENDNAKKAKEKIPLHVF
SPKYTKLRDWHHEVSARALNVQ

hide sequence

RefSeq Acc Id:

XP_006233484 ⟸ XM_006233422

- Peptide Label:

isoform X16

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKPTVTSVCSESAQELAEGQRRGSQGDIKQQNG
KIPPKRPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHL
KESENDNAKKAKEKIPLHVFSPKYTKLRDWHHEVSARALNVQ

hide sequence

RefSeq Acc Id:

XP_006233483 ⟸ XM_006233421

- Peptide Label:

isoform X15

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKPTVTSVCSESAQELAEGQRRGSQGDIKQQNG
NPGTVKIPPKRPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQIT
GTEHLKESENDNAKKAKEKIPLHVFSPKYTKLRDWHHEVSARALNVQ

hide sequence

RefSeq Acc Id:

XP_006233482 ⟸ XM_006233420

- Peptide Label:

isoform X14

- Sequence:

show sequence

MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL
EAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKGEPKEVVKPVPITSPAVSKVTSTTNMAYNKV
PRPFGSVSSPKVTSIPSPSSAFTPAHAATSSHASPPPVAAVTPPPLSASGLHASANPSAAQCSS
PPNTGKPAVHVPRQPTVTSVCSESAQELAEGQRRGSQGDIKQQNGPPRKHIVERNTEFYHIPTH
SDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESENDNAKKAKEKIPLHVFSPKYT
KLRDWHHEVSARALNVQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000022387 ⟸ ENSRNOT00000022387

RefSeq Acc Id:	XP_038958984 ⟸ XM_039103056
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038958983 ⟸ XM_039103055
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038958982 ⟸ XM_039103054
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038958981 ⟸ XM_039103053
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038958980 ⟸ XM_039103052
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038958978 ⟸ XM_039103050
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958977 ⟸ XM_039103049
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958979 ⟸ XM_039103051
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038958985 ⟸ XM_039103057
- Peptide Label:	isoform X13

RefSeq Acc Id:

ENSRNOP00000093276 ⟸ ENSRNOT00000114385

RefSeq Acc Id:

ENSRNOP00000097787 ⟸ ENSRNOT00000115118

RefSeq Acc Id:

ENSRNOP00000091194 ⟸ ENSRNOT00000097256

RefSeq Acc Id:

ENSRNOP00000091892 ⟸ ENSRNOT00000115772

RefSeq Acc Id:

ENSRNOP00000082394 ⟸ ENSRNOT00000095015

RefSeq Acc Id:

ENSRNOP00000094742 ⟸ ENSRNOT00000106810

RefSeq Acc Id:

ENSRNOP00000091918 ⟸ ENSRNOT00000109323

Protein Domains

LIM zinc-binding PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62920-F1-model_v2	AlphaFold	Q62920	1-591	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691793

Promoter ID:

EPDNEW_R2317

Type:

initiation region

Name:

Pdlim5_1

Description:

PDZ and LIM domain 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	247,988,478 - 247,988,538	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	266414737	266414738	T	C	snv	DOB/Oda (KyushuU)
2	266423823	266423824	G	A	snv	DOB/Oda (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621076	AgrOrtholog
BioCyc Gene	G2FUF-51001	BioCyc
Ensembl Genes	ENSRNOG00000016419	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000022387	ENTREZGENE
	ENSRNOP00000082394.1	UniProtKB/TrEMBL
	ENSRNOP00000091194.1	UniProtKB/TrEMBL
	ENSRNOP00000091892	ENTREZGENE
	ENSRNOP00000091892.1	UniProtKB/TrEMBL
	ENSRNOP00000091918	ENTREZGENE
	ENSRNOP00000091918.1	UniProtKB/TrEMBL
	ENSRNOP00000093276	ENTREZGENE
	ENSRNOP00000093276.1	UniProtKB/TrEMBL
	ENSRNOP00000094742	ENTREZGENE
	ENSRNOP00000094742.1	UniProtKB/TrEMBL
	ENSRNOP00000097787	ENTREZGENE
	ENSRNOP00000097787.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022387	ENTREZGENE
	ENSRNOT00000095015.1	UniProtKB/TrEMBL
	ENSRNOT00000097256.1	UniProtKB/TrEMBL
	ENSRNOT00000106810	ENTREZGENE
	ENSRNOT00000106810.1	UniProtKB/TrEMBL
	ENSRNOT00000109323	ENTREZGENE
	ENSRNOT00000109323.1	UniProtKB/TrEMBL
	ENSRNOT00000114385	ENTREZGENE
	ENSRNOT00000114385.1	UniProtKB/TrEMBL
	ENSRNOT00000115118	ENTREZGENE
	ENSRNOT00000115118.1	UniProtKB/TrEMBL
	ENSRNOT00000115772	ENTREZGENE
	ENSRNOT00000115772.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot
InterPro	DUF4749	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	Znf_LIM	UniProtKB/Swiss-Prot
KEGG Report	rno:64353	UniProtKB/Swiss-Prot
NCBI Gene	64353	ENTREZGENE
Pfam	DUF4749	UniProtKB/Swiss-Prot
	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
PhenoGen	Pdlim5	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
SMART	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50156	UniProtKB/Swiss-Prot
UniProt	A0A8I6ADM7_RAT	UniProtKB/TrEMBL
	A0A8I6ARU2_RAT	UniProtKB/TrEMBL
	A0A8I6B1G1_RAT	UniProtKB/TrEMBL
	A0A8I6G7D0_RAT	UniProtKB/TrEMBL
	A0A8I6GJC1_RAT	UniProtKB/TrEMBL
	A0A8I6GJY3_RAT	UniProtKB/TrEMBL
	A0A8I6GKL2_RAT	UniProtKB/TrEMBL
	PDLI5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Pdlim5	PDZ and LIM domain 5	Enh	enigma homolog	Symbol and Name updated	1299863	APPROVED
2005-01-20	Enh	enigma homolog			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Enh	enigma homolog			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains three LIM domains with two zinc-finger motifs in each domain	632670
gene_drugs	protein translocated from membrane fraction to cytosol on phorbol ester treatment	632670
gene_function	phosphorylates protein kinase C by associating with the amino terminal region	632670

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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