Snord45c (small nucleolar RNA, C/D box 45C) - Rat Genome Database

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Gene: Snord45c (small nucleolar RNA, C/D box 45C) Rattus norvegicus
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Symbol: Snord45c
Name: small nucleolar RNA, C/D box 45C
RGD ID: 41213597
Description: ASSOCIATED WITH medium chain acyl-CoA dehydrogenase deficiency (ortholog); INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); nickel sulfate (ortholog); potassium chromate (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120101233; small nucleolar RNA SNORD45
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,509,952 - 245,510,031 (-)NCBIGRCr8
mRatBN7.22242,850,124 - 242,850,203 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,850,124 - 242,850,203 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2260,115,676 - 260,115,755 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord45c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,509,952 - 245,510,031 (-)NCBIGRCr8
mRatBN7.22242,850,124 - 242,850,203 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,850,124 - 242,850,203 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2260,115,676 - 260,115,755 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q45NCBI
SNORD45C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,787,072 - 75,787,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,787,072 - 75,787,150 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,252,757 - 76,252,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,025,345 - 76,025,422 (+)NCBINCBI36Build 36hg18NCBI36
Celera174,492,667 - 74,492,744 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef174,382,589 - 74,382,666 (+)NCBIHuRef
CHM1_1176,368,050 - 76,368,127 (+)NCBICHM1_1
T2T-CHM13v2.0175,623,734 - 75,623,811 (+)NCBIT2T-CHM13v2.0
Snord45c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393153,617,766 - 153,617,826 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3153,617,762 - 153,617,841 (-)EnsemblGRCm39 Ensembl
GRCm383153,912,129 - 153,912,189 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,912,125 - 153,912,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv373153,575,093 - 153,575,153 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera3160,375,788 - 160,375,848 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map378.76NCBI
LOC119871356
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha357,493,792 - 57,493,870 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0355,272,864 - 55,272,942 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1354,792,184 - 54,792,262 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0355,001,810 - 55,001,888 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0355,343,932 - 55,344,010 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000084307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2242,850,124 - 242,850,203 (-)Ensembl
RefSeq Acc Id: XR_005501614
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82245,509,952 - 245,510,031 (-)NCBI
mRatBN7.22242,850,124 - 242,850,203 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50768 BioCyc
Ensembl Genes ENSRNOG00000056420 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000084307 ENTREZGENE
NCBI Gene LOC120101233 ENTREZGENE
PhenoGen Snord45c PhenoGen
RatGTEx ENSRNOG00000056420 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-17 Snord45c  small nucleolar RNA, C/D box 45C  LOC120101233  small nucleolar RNA SNORD45  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120101233  small nucleolar RNA SNORD45  Snord45c  small nucleolar RNA, C/D box 45C  Data merged from RGD:15010228 737654 PROVISIONAL
2021-01-27 LOC120101233  small nucleolar RNA SNORD45      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord45c  small nucleolar RNA, C/D box 45C      Symbol and Name status set to provisional 45752 PROVISIONAL