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Gene: Lrrc40 (leucine rich repeat containing 40) Rattus norvegicus
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Symbol: Lrrc40
Name: leucine rich repeat containing 40
RGD ID: 1562017
Description: Predicted to have protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to localize to cytoplasm and intracellular membrane-bounded organelle. Orthologous to human LRRC40 (leucine rich repeat containing 40); INTERACTS WITH bisphenol A; Brodifacoum; glafenine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: leucine-rich repeat-containing protein 40; LOC310946; MGC125134; similar to hypothetical protein FLJ20331
Orthologs:
Homo sapiens (human) : LRRC40 (leucine rich repeat containing 40)  HGNC  Alliance
Mus musculus (house mouse) : Lrrc40 (leucine rich repeat containing 40)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lrrc40 (leucine rich repeat containing 40)
Pan paniscus (bonobo/pygmy chimpanzee) : LRRC40 (leucine rich repeat containing 40)
Canis lupus familiaris (dog) : LRRC40 (leucine rich repeat containing 40)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lrrc40 (leucine rich repeat containing 40)
Sus scrofa (pig) : LRRC40 (leucine rich repeat containing 40)
Chlorocebus sabaeus (African green monkey) : LRRC40 (leucine rich repeat containing 40)
Heterocephalus glaber (naked mole-rat) : Lrrc40 (leucine rich repeat containing 40)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02264,864,321 - 264,894,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2264,864,351 - 264,893,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02283,504,162 - 283,536,825 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42256,194,404 - 256,212,099 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2238,913,590 - 238,931,286 (+)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Lrrc40
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1562017
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.