Mir145 (microRNA 145) - Rat Genome Database

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Gene: Mir145 (microRNA 145) Rattus norvegicus
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Symbol: Mir145
Name: microRNA 145
RGD ID: 2325565
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing translational repressor activity. Involved in several processes, including positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching; response to ischemia; and retina layer formation. Predicted to be located in extracellular exosome. Predicted to be part of RISC complex. Used to study glaucoma and myocardial infarction. Biomarker of biliary atresia; congestive heart failure; diabetes mellitus; liver disease (multiple); and pulmonary hypertension. Orthologous to human MIR145 (microRNA 145); INTERACTS WITH aflatoxin B1; atrazine; bleomycin A2.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-145; rno-mir-145
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81857,369,983 - 57,370,070 (-)NCBIGRCr8
mRatBN7.21855,099,640 - 55,099,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1855,099,640 - 55,099,727 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1857,193,356 - 57,193,443 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,907,967 - 57,908,054 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,723,506 - 55,723,593 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,969,907 - 56,969,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,969,907 - 56,969,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01856,198,820 - 56,198,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1853,250,138 - 53,250,225 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
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Reference
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Original Reference(s)
Mir145RatAcute Coronary Syndrome treatmentIEP 155230830 RGD 
Mir145RatAcute Coronary Syndrome disease_progressionISOMIR145 (Homo sapiens)155230830RNA:decreased expression:blood serum (human)RGD 
Mir145Rataortic aneurysm disease_progressionISOMIR145 (Homo sapiens)155260284miRNA:increased expression:aorta (human)RGD 
Mir145Rataortic dissection severityISOMIR145 (Homo sapiens)155260292miRNA:decreased expression:aorta (human)RGD 
Mir145Rataortic dissection  ISOMIR145 (Homo sapiens)155260309miRNA:decreased expression:aorta (human)RGD 
Mir145Rataortic dissection  ISOMIR145 (Homo sapiens)155260287miRNA:decreased expression:aorta (human)RGD 
Mir145Ratatherosclerosis amelioratesISOApoe (Mus musculus)9068941 RGDPMID:29710501 and REF_RGD_ID:155260303
Mir145RatBarrett's esophagus  ISOMIR145 (Homo sapiens)9068941miRNA:increased expression:esophagus (human)RGDPMID:29906417 and REF_RGD_ID:153344526
Mir145Ratbiliary atresia  IEP 15039396miRNA:decreased expression:liver (human)RGD 
Mir145Ratbreast cancer  ISOMIR145 (Homo sapiens)153297766RNA:increased expression:peripheral blood mononuclear cell (human)RGD 
Mir145RatCardiomegaly treatmentISOMir145a (Mus musculus)155260312 RGD 
Mir145RatCardiomegaly  ISOMir145a (Mus musculus)155260312miRNA:increased expression:blood serum (human)RGD 
Mir145RatCarotid Artery Injuries  IEP 13210556miRNA:altered expression:wall of blood vessel (rat)RGD 
Mir145Ratcerebral infarction  ISOMIR145 (Homo sapiens)155260291miRNA:increased expression:blood (human)RGD 
Mir145Ratcerebral infarction amelioratesISOMir145a (Mus musculus)155260295 RGD 
Mir145Ratcolon cancer  ISOMIR145 (Homo sapiens)153297766RNA:increased expression:peripheral blood mononuclear cell (human)RGD 
Mir145Ratcolorectal cancer  ISOMIR145 (Homo sapiens)153297808miRNA:decreased expression:colorectal mucosa (human)RGD 
Mir145Ratcolorectal cancer sexual_dimorphismISOMIR145 (Homo sapiens)152995508RNA:decreased expression:blood serum and colorectum (human)RGD 
Mir145Ratcongestive heart failure disease_progressionIEP 155260283associated with acute myocardial infarction and miRNA:decreased expression:blood plasma (rat)RGD 
Mir145Ratcongestive heart failure treatmentIEP 155260293 RGD 
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Object Symbol
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Reference
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Original Reference(s)
Mir145Ratfamilial adenomatous polyposis 1  ISOMIR145 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
Mir145RatHereditary Neoplastic Syndromes  ISOMIR145 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
Mir145RatNeurodevelopmental Disorders  ISOMIR145 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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Original Reference(s)
Mir145RatAlbuminuria  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24223694
Mir145RatAnimal Mammary Neoplasms  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24447120
Mir145RatArsenic Poisoning  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29705342
Mir145RatB-Cell Chronic Lymphocytic Leukemia  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17892514
Mir145RatB-cell lymphoma  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17892514
Mir145RatBreast Neoplasms  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21463514
Mir145Ratcongestive heart failure  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36071497
Mir145RatDiabetic Nephropathies  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24223694
Mir145RatDisease Progression  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30026881
Mir145RatEsophageal Neoplasms  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21248297
Mir145RatExperimental Liver Neoplasms  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21035526
Mir145Ratlung non-small cell carcinoma  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20097187
Mir145Ratmyocardial infarction  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29956747
Mir145Ratovarian carcinoma  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30365097
Mir145Ratpre-malignant neoplasm  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21035526
Mir145Ratpulmonary fibrosis  ISOMir145a (Mus musculus)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25926378
Mir145Rattransitional cell carcinoma  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30026881
Mir145Raturinary bladder cancer  ISOMIR145 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30026881
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Original Reference(s)
Mir145Rat(-)-epigallocatechin 3-gallate multiple interactionsISOMIR145 (Homo sapiens)155230825(-)-epigallocatechin 3-gallate inhibits the reaction [angiotensin II decreases expression of MIR145a RNA in vascular smooth muscle cell] RGD 
Mir145Rat1,2-dichloroethane decreases expressionISOMir145a (Mus musculus)6480464ethylene dichloride results in decreased expression of MIR145A mRNACTDPMID:28960355
Mir145Rat1,3,5-trinitro-1,3,5-triazinane decreases expressionISOMir145a (Mus musculus)6480464cyclonite results in decreased expression of MIR145 mRNACTDPMID:19270793
Mir145Rat1,4-dichlorobenzene decreases expressionISOMir145a (Mus musculus)64804644-dichlorobenzene results in decreased expression of MIR145A mRNACTDPMID:32105654
Mir145Rat17beta-estradiol multiple interactionsISOMIR145 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in decreased expression of MIR145 mRNACTDPMID:30328349
Mir145Rat3-methylcholanthrene decreases expressionISOMir145a (Mus musculus)6480464Methylcholanthrene results in decreased expression of MIR145A mRNACTDPMID:25926378
Mir145Rat5-aza-2'-deoxycytidine increases expressionISOMIR145 (Homo sapiens)6480464Decitabine results in increased expression of MIR145 mRNACTDPMID:17621267
Mir145Rat5-aza-2'-deoxycytidine multiple interactionsISOMIR145 (Homo sapiens)6480464IL6 protein inhibits the reaction [Decitabine results in increased expression of MIR145 mRNA]CTDPMID:17621267
Mir145Rataflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of MIR145 mRNACTDPMID:24472605
Mir145Rataldehydo-D-glucose increases expressionISOMIR145 (Homo sapiens)6480464Glucose results in increased expression of MIR145 mRNACTDPMID:24223694
Mir145Ratall-trans-retinoic acid multiple interactionsISOMIR145 (Homo sapiens)6480464[Tretinoin co-treated with Phenylbutyrates co-treated with 1-hydroxy-2-oxo-3 and 3-bis(2-aminoethyl)-1-triazene] results in increased expression of MIR145 mRNACTDPMID:23284745
Mir145Ratangiotensin II decreases expression ISOMIR145 (Homo sapiens)155230825angiotensin II decreases expression of MIR145a RNA in vascular smooth muscle cellRGD 
Mir145Ratangiotensin II decreases expression ISOMir145a (Mus musculus)155260287Angiotensin II decreases expression of miRNA145 RNA in vascular smooth muscle cellsRGD 
Mir145Ratantigen decreases expressionISOMir145a (Mus musculus)6480464Antigens results in decreased expression of MIR145A mRNACTDPMID:27038180
Mir145Ratarecoline increases expressionISOMIR145 (Homo sapiens)6480464Arecoline results in increased expression of MIR145CTDPMID:21750350
Mir145Ratarsane increases expressionISOMir145a (Mus musculus)6480464Arsenic results in increased expression of MIR145A mRNACTDPMID:36463740
Mir145Ratarsenic atom increases expressionISOMir145a (Mus musculus)6480464Arsenic results in increased expression of MIR145A mRNACTDPMID:36463740
Mir145Ratarsenite(3-) increases expressionISOMIR145 (Homo sapiens)6480464arsenite results in increased expression of MIR145 mRNACTDPMID:22728250
Mir145Ratatorvastatin calcium increases expressionISOMIR145 (Homo sapiens)6480464Atorvastatin results in increased expression of MIR145 mRNACTDPMID:29630879
Mir145Ratatrazine decreases expressionEXP 6480464Atrazine results in decreased expression of MIR145 mRNACTDPMID:31185338

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Biological Process
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Original Reference(s)
Mir145Rataorta smooth muscle tissue morphogenesis acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291MGI:2676828 PMID:19816508RGDPMID:19816508
Mir145Ratcardiac vascular smooth muscle cell differentiation acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291MGI:2676828 PMID:19816508RGDPMID:19816508
Mir145Ratcellular response to amino acid stimulus acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291 PMID:20548288RGDPMID:20548288
Mir145Ratcellular response to estrogen stimulus acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291 PMID:18791161RGDPMID:18791161
Mir145Ratcellular response to ethanol acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291 PMID:19091803RGDPMID:19091803
Mir145Ratcellular response to hydroperoxide  IEP 10047368 RGD 
Mir145Ratcellular response to leukemia inhibitory factor acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291 PMID:20439489RGDPMID:20439489
Mir145Ratectodermal cell differentiation involved_inISOMIR145 (Homo sapiens)1624291 PMID:19409607RGDPMID:19409607
Mir145Rathematopoietic stem cell proliferation acts_upstream_of_or_within_positive_effectISOMir145a (Mus musculus)1624291MGI:2676828 more ...RGDPMID:29925839
Mir145Ratlong-term synaptic potentiation acts_upstream_of_or_withinISOMir145a (Mus musculus)1624291 PMID:25858512RGDPMID:25858512
Mir145Ratmesodermal cell differentiation involved_inISOMIR145 (Homo sapiens)1624291 PMID:19409607RGDPMID:19409607
Mir145RatmiRNA-mediated gene silencing by inhibition of translation involved_inISOMIR145 (Homo sapiens)1624291 PMID:19360360 more ...RGDPMID:19360360 more ...
Mir145RatmiRNA-mediated gene silencing by mRNA destabilization involved_inISOMIR145 (Homo sapiens)1624291 PMID:25323858 more ...RGDPMID:25323858 more ...
Mir145RatmiRNA-mediated post-transcriptional gene silencing involved_inISOMIR145 (Homo sapiens)1624291 PMID:15131085 more ...RGDPMID:15131085 more ...
Mir145Ratnegative regulation of angiogenesis involved_inISOMIR145 (Homo sapiens)1624291 PMID:25801897RGDPMID:25801897
Mir145Ratnegative regulation of cardiac muscle cell apoptotic process involved_inISOMIR145 (Homo sapiens)1624291 PMID:23028672RGDPMID:23028672
Mir145Ratnegative regulation of cell migration involved_inISOMIR145 (Homo sapiens)1624291 PMID:23076445RGDPMID:23076445
Mir145Ratnegative regulation of cell migration acts_upstream_ofISOMIR145 (Homo sapiens)1624291 PMID:24384875RGDPMID:24384875
Mir145Ratnegative regulation of cellular response to transforming growth factor beta stimulus involved_inISOMIR145 (Homo sapiens)1624291UniProtKB:P01137 and PMID:25323858RGDPMID:25323858
Mir145Ratnegative regulation of cholesterol efflux involved_inISOMIR145 (Homo sapiens)1624291 PMID:24135019RGDPMID:24135019
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Cellular Component

  
Object Symbol
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Original Reference(s)
Mir145Ratextracellular exosome located_inISOMIR145 (Homo sapiens)1624291 PMID:31926946RGDPMID:31926946
Mir145RatRISC complex part_ofISOMir145a (Mus musculus)1624291 PMID:23185045RGDPMID:23185045

Molecular Function

  


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Reference Title
Reference Citation
1. MiR-145 facilitates proliferation and migration of endothelial progenitor cells and recanalization of arterial thrombosis in cerebral infarction mice via JNK signal pathway. Chen R, etal., Int J Clin Exp Pathol. 2015 Oct 1;8(10):13770-6. eCollection 2015.
2. Long noncoding RNA myocardial infarction associated transcript promotes the development of thoracic aortic by targeting microRNA-145 via the PI3K/Akt signaling pathway. Chen S, etal., J Cell Biochem. 2019 Sep;120(9):14405-14413. doi: 10.1002/jcb.28695. Epub 2019 Apr 15.
3. MicroRNA-145, a novel smooth muscle cell phenotypic marker and modulator, controls vascular neointimal lesion formation. Cheng Y, etal., Circ Res. 2009 Jul 17;105(2):158-66. doi: 10.1161/CIRCRESAHA.109.197517. Epub 2009 Jun 18.
4. miR-145 attenuates cardiac fibrosis through the AKT/GSK-3β/β-catenin signaling pathway by directly targeting SOX9 in fibroblasts. Cui S, etal., J Cell Biochem. 2021 Feb;122(2):209-221. doi: 10.1002/jcb.29843. Epub 2020 Sep 5.
5. Circulatory microRNA-145 expression is increased in cerebral ischemia. Gan CS, etal., Genet Mol Res. 2012 Jan 27;11(1):147-52. doi: 10.4238/2012.January.27.1.
6. Plasma Levels of microRNA-145 Are Associated with Severity of Coronary Artery Disease. Gao H, etal., PLoS One. 2015 May 4;10(5):e0123477. doi: 10.1371/journal.pone.0123477. eCollection 2015.
7. Long noncoding RNA MALAT1 mediates cardiac fibrosis in experimental postinfarct myocardium mice model. Huang S, etal., J Cell Physiol. 2019 Mar;234(3):2997-3006. doi: 10.1002/jcp.27117. Epub 2018 Aug 26.
8. MicroRNA-145 post-transcriptionally regulates the expression and function of P-glycoprotein in intestinal epithelial cells. Ikemura K, etal., Mol Pharmacol. 2013 Feb;83(2):399-405. doi: 10.1124/mol.112.081844. Epub 2012 Nov 19.
9. Circular RNA Sirtuin1 represses pulmonary artery smooth muscle cell proliferation, migration and autophagy to ameliorate pulmonary hypertension via targeting microRNA-145-5p/protein kinase-B3 axis. Jing X, etal., Bioengineered. 2022 Apr;13(4):8759-8771. doi: 10.1080/21655979.2022.2036302.
10. Associations Between miRNAs and Two Different Cancers: Breast and Colon. Kundaktepe BP, etal., Cancer Manag Res. 2020 Feb 7;12:871-879. doi: 10.2147/CMAR.S227628. eCollection 2020.
11. P38 MAPK Signaling Pathway Mediates Angiotensin II-Induced miR143/145 Gene Cluster Downregulation during Aortic Dissection Formation. Li B, etal., Ann Vasc Surg. 2017 Apr;40:262-273. doi: 10.1016/j.avsg.2016.09.016. Epub 2017 Feb 4.
12. Investigation of the clinical significance and prognostic value of microRNA-145 in human hepatocellular carcinoma. Li P, etal., Medicine (Baltimore). 2018 Dec;97(51):e13715. doi: 10.1097/MD.0000000000013715.
13. MicroRNA-145 protects cardiomyocytes against hydrogen peroxide (H(2)O(2))-induced apoptosis through targeting the mitochondria apoptotic pathway. Li R, etal., PLoS One. 2012;7(9):e44907. doi: 10.1371/journal.pone.0044907. Epub 2012 Sep 18.
14. Regulatory Mechanism of MicroRNA-145 in the Pathogenesis of Acute Aortic Dissection. Li T, etal., Yonsei Med J. 2019 Apr;60(4):352-359. doi: 10.3349/ymj.2019.60.4.352.
15. Effects of flavonoids on MicroRNA 145 regulation through Klf4 and myocardin in neointimal formation in vitro and in vivo. Lin CM, etal., J Nutr Biochem. 2018 Feb;52:27-35. doi: 10.1016/j.jnutbio.2017.08.016. Epub 2017 Sep 14.
16. Correlation between miR-21 and miR-145 and the incidence and prognosis of colorectal cancer. Liu Q, etal., J BUON. 2018 Jan-Feb;23(1):29-35.
17. Over-expression of microRNA-145 drives alterations in β-adrenergic signaling and attenuates cardiac remodeling in heart failure post myocardial infarction. Liu Z, etal., Aging (Albany NY). 2020 Jun 18;12(12):11603-11622. doi: 10.18632/aging.103320. Epub 2020 Jun 18.
18. MicroRNA-145 Protects against Myocardial Ischemia Reperfusion Injury via CaMKII-Mediated Antiapoptotic and Anti-Inflammatory Pathways. Liu Z, etal., Oxid Med Cell Longev. 2019 Sep 10;2019:8948657. doi: 10.1155/2019/8948657. eCollection 2019.
19. Overexpression of MicroRNA-145 Promotes Ascending Aortic Aneurysm Media Remodeling through TGF-β1. Pei H, etal., Eur J Vasc Endovasc Surg. 2015 Jan;49(1):52-9. doi: 10.1016/j.ejvs.2014.10.018.
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
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PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:18791161   PMID:19091803   PMID:19816508   PMID:20403161   PMID:20439489   PMID:20548288   PMID:21276775   PMID:21690067  
PMID:21762377   PMID:23185045   PMID:23702479   PMID:24043548   PMID:24106971   PMID:24166492   PMID:25139829   PMID:25858512   PMID:26119485   PMID:26432843   PMID:27459539   PMID:27907012  
PMID:28980287   PMID:29030988   PMID:29057271   PMID:29072705   PMID:29178342   PMID:29217135   PMID:29758198   PMID:29925839   PMID:29956747   PMID:30179678   PMID:30465949   PMID:30729278  
PMID:30747413   PMID:31070083   PMID:31425342   PMID:33185386   PMID:33378041   PMID:33945431   PMID:33984358   PMID:34036377   PMID:34122720   PMID:34767671   PMID:35082354   PMID:35579106  
PMID:35809317   PMID:36722155   PMID:37083109   PMID:37329866   PMID:38158661   PMID:38866991   PMID:39192786  



Mir145
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81857,369,983 - 57,370,070 (-)NCBIGRCr8
mRatBN7.21855,099,640 - 55,099,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1855,099,640 - 55,099,727 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1857,193,356 - 57,193,443 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,907,967 - 57,908,054 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,723,506 - 55,723,593 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,969,907 - 56,969,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,969,907 - 56,969,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01856,198,820 - 56,198,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1853,250,138 - 53,250,225 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
MIR145
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385149,430,646 - 149,430,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5149,430,646 - 149,430,733 (+)EnsemblGRCh38hg38GRCh38
GRCh375148,810,209 - 148,810,296 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365148,790,401 - 148,790,488 (+)NCBINCBI36Build 36hg18NCBI36
Celera5144,892,189 - 144,892,276 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5143,956,545 - 143,956,632 (+)NCBIHuRef
CHM1_15148,242,644 - 148,242,731 (+)NCBICHM1_1
T2T-CHM13v2.05149,965,492 - 149,965,579 (+)NCBIT2T-CHM13v2.0
Mir145a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,780,896 - 61,780,965 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,780,896 - 61,780,965 (-)EnsemblGRCm39 Ensembl
GRCm381861,647,825 - 61,647,894 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,647,825 - 61,647,894 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,807,479 - 61,807,548 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1862,930,620 - 62,930,689 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.64NCBI
MIR145
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1459,533,128 - 59,533,210 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl459,533,128 - 59,533,210 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha459,298,427 - 59,298,509 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0460,015,687 - 60,015,769 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl460,015,687 - 60,015,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,802,584 - 59,802,666 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,917,043 - 59,917,125 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0460,447,590 - 60,447,672 (-)NCBIUU_Cfam_GSD_1.0
MIR145
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2150,580,126 - 150,580,211 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12150,580,126 - 150,580,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,346,127 - 157,346,212 (+)NCBISscrofa10.2Sscrofa10.2susScr3

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Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Sod2rno-miR-145-5pMirtarbaseexternal_infoqRT-PCR//Western blot//MicroarrayFunctional MTI19142192
Klf5rno-miR-145-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blot//Functional MTI19542014
Bnip3rno-miR-145-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI23028672
Myocdrno-miR-145-5pMirtarbaseexternal_infoqRT-PCRFunctional MTI (Weak)19542014

Predicted Targets
Summary Value
Count of predictions:9286
Count of gene targets:5816
Count of transcripts:6254
Interacting mature miRNAs:rno-miR-145-3p, rno-miR-145-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat

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alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 10 43 59 35 38 19 19 19 132 72 51 30 37 19


RefSeq Transcripts NR_031891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1855,099,640 - 55,099,727 (-)Ensembl
Rnor_6.0 Ensembl1856,969,907 - 56,969,994 (-)Ensembl
RefSeq Acc Id: NR_031891
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81857,369,983 - 57,370,070 (-)NCBI
mRatBN7.21855,099,640 - 55,099,727 (-)NCBI
Rnor_6.01856,969,907 - 56,969,994 (-)NCBI
Rnor_5.01856,198,820 - 56,198,907 (-)NCBI
Celera1853,250,138 - 53,250,225 (-)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 9 of 9 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-7310 BioCyc
Ensembl Genes ENSRNOG00000035474 Ensembl
miRBase MI0000918 ENTREZGENE
NCBI Gene 100314036 ENTREZGENE
PhenoGen Mir145 PhenoGen
RatGTEx ENSRNOG00000035474 RatGTEx
RNAcentral URS0000527F89 RNACentral
  URS000075B7E1 RNACentral
  URS000075C5A7 RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir145  microRNA 145  Mir145  microRNA mir-145  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir145  microRNA mir-145      Symbol and Name status set to provisional 70820 PROVISIONAL