Bw27 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Bw27 (Body weight QTL 27) Rattus norvegicus

Symbol: Bw27
Name: Body weight QTL 27
RGD ID: 1331752
Previously known as: ARVA_WGHTCS
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 2.963
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81854,490,801 - 68,120,379RGD_MAPPER_PIPELINE
mRatBN7.21852,292,875 - 65,845,095RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01853,861,252 - 67,502,266RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01853,100,479 - 66,665,205RGDRnor5.0
RGSC_v3.41854,605,732 - 69,013,448RGDRGSC3.4
RGSC_v3.11854,674,164 - 69,086,649RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27Ratobesity  IAGP 70849 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27Ratincreased body weight  IAGP 70849 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27Ratbody weight  IDA 70849 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27Ratcontrol condition  IDA 70849 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27Ratbody weighing method  IDA 70849 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27RatBN/SsNHsd  IEA 70849 RGD 
Bw27RatSS/JrHsdMcwi  IEA 70849 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw27Ratbody mass  IDA 70849 RGD 


#
Reference Title
Reference Citation
1. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.

Related QTL Description Reference
Scl28 maps to same region RGD:70849



1 to 20 of 185 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2323524Naa50-ps1N(alpha)-acetyltransferase 50, NatE catalytic subunit, pseudogene 1185233697052337537Rat
1308359Adamts19ADAM metallopeptidase with thrombospondin type 1 motif, 19185234644852531245Rat
1312005Minar2membrane integral NOTCH2 associated receptor 2185253971452554465Rat
41282418LOC120098155uncharacterized LOC120098155185255029452553031Rat
1560819Chsy3chondroitin sulfate synthase 3185264435652901257Rat
7500552LOC102548951uncharacterized LOC102548951185343914553494664Rat
1359421Ifgga2l1interferon-gamma-inducible GTPase 2 like 1185376111853770183Rat
41389142Ifgga2l-ps2interferon-gamma-inducible GTPase 2 like, pseudogene 2185378908553794279Rat
1305184Ifgga4linterferon-gamma-inducible GTPase 4 like185383842653854858Rat
1565797Ifgga2l2interferon-gamma-inducible GTPase 2 like 2185387083853890135Rat
7748007Ifgga2l-ps1interferon-gamma-inducible GTPase 2 like, pseudogene 1185390703453909527Rat
628864Smim3small integral membrane protein 3185393001953982339Rat
71023Dctn4dynactin subunit 4185398235554009409Rat
1305770Rbm22RNA binding motif protein 22185401337454024182Rat
1594778Myoz3myozenin 3185402613354046151Rat
620668Synposynaptopodin185404829954106388Rat
41167261LOC120098275uncharacterized LOC120098275185412539654133520Rat
69303Ndst1N-deacetylase and N-sulfotransferase 1185413688754199545Rat
62025Rps14ribosomal protein S14185422785454232638Rat
2313Cd74CD74 molecule185425675754266003Rat

1 to 20 of 185 rows
1 to 20 of 315 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10108D18Mgh11341185564260755642948Ratregion
10647D18Wox12140186037761560377755Ratregion
10648D18Wox13163186037759060377753Ratregion
10667D18Mit17117186076313260763249Ratregion
33856D18Mit10225186040871960408944Ratregion
33884D18Mit8147185979647859796643Ratregion
34043D18Mit16148186169831761698465Ratregion
34182D18Mgh3145186584495065845095Ratregion
34218D18Mgh2183185971223459712417Ratregion
34256D4Mgh18124186205711662057171Ratregion
37412D18Rat40154185933040959330563Ratregion
37514D18Rat43227186357104063571267Ratregion
37548D18Rat52195185853611658536311Ratregion
37568D18Rat55100185253976352539863Ratregion
37628D18Rat41219185659458956594808Ratregion
37738D18Rat57180185229287552293055Ratregion
36638D18Rat14173186393288563933058Ratregion
34975D18Rat13149186363672163636873Ratregion
39610D18Rat91111185846525358465364Ratregion
40670D18Rat87226186314087063141096Ratregion
1 to 20 of 315 rows

Flank 1: (D18Rat57)
Rat AssemblyChrPosition (strand)Source
GRCr81854,490,801 - 54,490,981 (+)Marker Load Pipeline
mRatBN7.21852,292,875 - 52,293,055 (+)MAPPER
Rnor_6.01853,861,252 - 53,861,431NCBI
Rnor_5.01853,100,479 - 53,100,658UniSTS
RGSC_v3.41854,605,733 - 54,605,912UniSTS
RGSC_v3.41854,605,732 - 54,605,912RGD
RGSC_v3.11854,674,164 - 54,674,343RGD
Celera1850,397,794 - 50,397,973UniSTS
RH 3.4 Map18477.92RGD
RH 3.4 Map18477.92UniSTS
RH 2.0 Map18409.0RGD
SHRSP x BN Map1821.6699RGD
FHH x ACI Map1830.38RGD
Peak: (D18Mit8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21859,796,478 - 59,796,643 (+)MAPPER
Rnor_6.01861,985,648 - 61,985,812NCBI
Rnor_5.01861,176,840 - 61,177,004UniSTS
RGSC_v3.41862,228,896 - 62,229,060UniSTS
RGSC_v3.11862,301,978 - 62,302,324RGD
Celera1857,917,062 - 57,917,198UniSTS
RH 3.4 Map18604.6RGD
RH 3.4 Map18604.6UniSTS
RH 2.0 Map18307.7RGD
SHRSP x BN Map1832.1699RGD
Cytogenetic Map18q12.1UniSTS
Flank 2: (D18Mgh3)
Rat AssemblyChrPosition (strand)Source
GRCr81868,120,234 - 68,120,379 (+)Marker Load Pipeline
mRatBN7.21865,844,950 - 65,845,095 (+)MAPPER
Rnor_6.01867,502,122 - 67,502,266NCBI
Rnor_5.01866,665,061 - 66,665,205UniSTS
RGSC_v3.41869,013,303 - 69,013,448RGD
RGSC_v3.41869,013,304 - 69,013,448UniSTS
RGSC_v3.11869,086,504 - 69,086,649RGD
Celera1863,873,881 - 63,874,025UniSTS
RH 3.4 Map18685.3UniSTS
RH 3.4 Map18685.3RGD
RH 2.0 Map18224.7RGD
SHRSP x BN Map1838.7499RGD
FHH x ACI Map1848.5199RGD
Cytogenetic Map18q12.2UniSTS


1 to 10 of 75 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)185880568763636873Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat

1 to 10 of 75 rows


Database
Acc Id
Source(s)
NCBI Gene Bw27

Note Type Note Reference
qtl_general body weight prior to anesthesia for acute protocol 70849
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849