Rax (retina and anterior neural fold homeobox) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rax (retina and anterior neural fold homeobox) Rattus norvegicus
Analyze
Symbol: Rax
Name: retina and anterior neural fold homeobox
RGD ID: 620371
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including camera-type eye development; hypothalamus development; and limb development. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in isolated microphthalmia 3. Orthologous to human RAX (retina and anterior neural fold homeobox); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: retina and anterior neural fold homeobox protein; retinal homeobox protein Rx; retinal homeobox transcription factor Rx/rax; Rx
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81861,733,322 - 61,737,444 (-)NCBIGRCr8
mRatBN7.21859,463,347 - 59,467,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1859,463,737 - 59,467,431 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1861,557,510 - 61,561,206 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01862,256,193 - 62,259,889 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01860,084,163 - 60,087,857 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01861,638,352 - 61,642,056 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1861,638,352 - 61,642,056 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01860,835,143 - 60,838,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41862,567,485 - 62,571,191 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11862,640,685 - 62,644,392 (+)NCBI
Celera1857,585,618 - 57,589,312 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. rax, Hes1, and notch1 promote the formation of Muller glia by postnatal retinal progenitor cells. Furukawa T, etal., Neuron 2000 May;26(2):383-94.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:640224   PMID:925203   PMID:10625658   PMID:11105055   PMID:11668677   PMID:13970081   PMID:13970082   PMID:15789424   PMID:17247120   PMID:21749377   PMID:21897745  


Genomics

Comparative Map Data
Rax
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81861,733,322 - 61,737,444 (-)NCBIGRCr8
mRatBN7.21859,463,347 - 59,467,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1859,463,737 - 59,467,431 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1861,557,510 - 61,561,206 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01862,256,193 - 62,259,889 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01860,084,163 - 60,087,857 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01861,638,352 - 61,642,056 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1861,638,352 - 61,642,056 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01860,835,143 - 60,838,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41862,567,485 - 62,571,191 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11862,640,685 - 62,644,392 (+)NCBI
Celera1857,585,618 - 57,589,312 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
RAX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381859,267,038 - 59,273,454 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1859,267,035 - 59,274,086 (-)EnsemblGRCh38hg38GRCh38
GRCh371856,934,270 - 56,940,686 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361855,085,247 - 55,091,605 (-)NCBINCBI36Build 36hg18NCBI36
Celera1853,652,123 - 53,658,480 (-)NCBICelera
Cytogenetic Map18q21.32NCBI
HuRef1853,643,456 - 53,649,718 (-)NCBIHuRef
CHM1_11856,929,439 - 56,935,862 (-)NCBICHM1_1
T2T-CHM13v2.01859,468,558 - 59,474,973 (-)NCBIT2T-CHM13v2.0
Rax
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391866,067,710 - 66,072,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1866,061,348 - 66,072,858 (-)EnsemblGRCm39 Ensembl
GRCm381865,934,639 - 65,939,089 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1865,928,277 - 65,939,787 (-)EnsemblGRCm38mm10GRCm38
MGSCv371866,094,293 - 66,098,743 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361866,060,005 - 66,064,442 (-)NCBIMGSCv36mm8
Celera1867,210,139 - 67,214,590 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1839.03NCBI
Rax
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540243,410,404 - 43,414,306 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540243,408,933 - 43,414,697 (-)NCBIChiLan1.0ChiLan1.0
RAX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21776,813,222 - 76,819,634 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11862,505,836 - 62,512,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01852,664,243 - 52,669,177 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11855,990,984 - 55,995,469 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1855,990,984 - 55,995,469 (-)Ensemblpanpan1.1panPan2
RAX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1116,940,671 - 16,945,127 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl116,940,658 - 16,943,633 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha117,915,783 - 17,920,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0116,817,416 - 16,821,898 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl116,817,416 - 16,821,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1116,853,025 - 16,857,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0116,773,789 - 16,778,200 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0117,035,324 - 17,039,744 (+)NCBIUU_Cfam_GSD_1.0
Rax
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494430,212,492 - 30,218,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364975,452,800 - 5,456,905 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364975,451,055 - 5,457,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1161,678,955 - 161,683,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11161,679,154 - 161,683,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21179,257,056 - 179,260,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11820,464,417 - 20,469,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1820,464,657 - 20,468,812 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660605,117,972 - 5,124,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rax
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247924,652,493 - 4,656,826 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247924,652,430 - 4,657,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rax
37 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:62
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000022784
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)185880568763636873Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312600Bp341Blood pressure QTL 3410.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185933040970263868Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat

Markers in Region
Rax  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01861,641,476 - 61,641,911NCBIRnor6.0
Rnor_5.01860,838,267 - 60,838,702UniSTSRnor5.0
RGSC_v3.41862,567,630 - 62,568,065UniSTSRGSC3.4
Celera1857,588,741 - 57,589,167UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 17 43 15 16 3 7 3 2 41 27 40 6 34 13

Sequence


Ensembl Acc Id: ENSRNOT00000022784   ⟹   ENSRNOP00000022785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1859,463,737 - 59,467,431 (-)Ensembl
Rnor_6.0 Ensembl1861,638,352 - 61,642,056 (-)Ensembl
RefSeq Acc Id: NM_053678   ⟹   NP_446130
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81861,733,322 - 61,737,444 (-)NCBI
mRatBN7.21859,463,347 - 59,467,469 (-)NCBI
Rnor_6.01861,638,352 - 61,642,056 (-)NCBI
Rnor_5.01860,835,143 - 60,838,847 (-)NCBI
RGSC_v3.41862,567,485 - 62,571,191 (+)RGD
Celera1857,585,618 - 57,589,312 (-)RGD
Sequence:
RefSeq Acc Id: NP_446130   ⟸   NM_053678
- UniProtKB: Q99PA4 (UniProtKB/Swiss-Prot),   Q9JLT7 (UniProtKB/Swiss-Prot),   A6IXR9 (UniProtKB/TrEMBL),   D3ZLM8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022785   ⟸   ENSRNOT00000022784
Protein Domains
Homeobox   OAR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLT7-F1-model_v2 AlphaFold Q9JLT7 1-342 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620371 AgrOrtholog
BioCyc Gene G2FUF-7199 BioCyc
Ensembl Genes ENSRNOG00000016944 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055010533 UniProtKB/Swiss-Prot
  ENSRNOG00060017680 UniProtKB/Swiss-Prot
  ENSRNOG00065021547 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022784 UniProtKB/TrEMBL
  ENSRNOT00000022784.6 UniProtKB/Swiss-Prot
  ENSRNOT00055017843 UniProtKB/Swiss-Prot
  ENSRNOT00060030227 UniProtKB/Swiss-Prot
  ENSRNOT00065036621 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAX/RAX2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:114213 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 114213 ENTREZGENE
PANTHER PTHR46271 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RETINAL HOMEOBOX PROTEIN RX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rax PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016944 RatGTEx
  ENSRNOG00055010533 RatGTEx
  ENSRNOG00060017680 RatGTEx
  ENSRNOG00065021547 RatGTEx
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6IXR8_RAT UniProtKB/TrEMBL
  A6IXR9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZLM8 ENTREZGENE, UniProtKB/TrEMBL
  Q99PA4 ENTREZGENE
  Q9JLT7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q99PA4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Rax  retina and anterior neural fold homeobox      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rax  retina and anterior neural fold homeobox      Symbol and Name status set to provisional 70820 PROVISIONAL