Scl28 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl28 (Serum cholesterol level QTL 28) Rattus norvegicus

Symbol: Scl28
Name: Serum cholesterol level QTL 28
RGD ID: 1331781
Previously known as: BW_HDL_VALUE
Trait: blood HDL cholesterol amount   (VT:0000184)    
Measurement Type: serum high density lipoprotein cholesterol level   (CMO:0000361)    
LOD Score: 3.995
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8181 - 25,071,266RGD_MAPPER_PIPELINE
mRatBN7.21811,944,299 - 24,797,117RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01815,539,427 - 25,961,165RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01815,314,027 - 25,675,871RGDRnor5.0
RGSC_v3.41812,406,975 - 25,621,024RGDRGSC3.4
RGSC_v3.11812,433,620 - 25,647,670RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.
Related QTLs

Related QTL Description Reference
Rf44 maps to same region RGD:70849
Scl27 maps to same region RGD:70849
Bw27 maps to same region RGD:70849


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3916Ttrtransthyretin181194179111951008Rat
71046B4galt6beta-1,4-galactosyltransferase 6181195838212015247Rat
7733249LOC102551486uncharacterized LOC102551486181201461012021819Rat
6502448Ipo5-ps1importin 5, pseudogene 1181203772312039781Rat
41193066LOC120098272uncharacterized LOC120098272181208142912093465Rat
1309102Trappc8trafficking protein particle complex subunit 8181210387412180422Rat
1560045Vom2r52l1vomeronasal 2 receptor, 52 like 1181219476712207125Rat
1592104Eef2-ps4eukaryotic translation elongation factor 2, pseudogene 4181223437412236924Rat
1306757Rnf125ring finger protein 125181225406612275719Rat
621485Rnf138ring finger protein 138181229155712315931Rat
3081Mep1bmeprin A subunit beta181236612612392840Rat
1591842Garem1GRB2 associated regulator of MAPK1 subtype 1181242016912585323Rat
41250271LOC120098265uncharacterized LOC120098265181249349512509604Rat
41219354LOC120098431U6 spliceosomal RNA181268326212683364Rat
1566178Klhl14kelch-like family member 14181280425312917828Rat
75277674930426D05RiklRIKEN cDNA 4930426D05 gene like181291489212918657Rat
1308160Ccdc178coiled-coil domain containing 178181307483413472732Rat
1305869Asxl3ASXL transcriptional regulator 3181359352913766324Rat
1310663Nol4nucleolar protein 4181393249914294873Rat
40980709LOC120098415U2 spliceosomal RNA181402922314029406Rat
41015557LOC120098257uncharacterized LOC120098257181414626814153430Rat
2324800Cyb5a-ps1cytochrome b5 type A, pseudogene 1181417912214179563Rat
41401461LOC120098396small nucleolar RNA SNORA17181439743314397563Rat
1561985Dtnadystrobrevin, alpha181468719314944232Rat
41061447LOC120098123uncharacterized LOC120098123181483976214857935Rat
40940132LOC120098122uncharacterized LOC120098122181494893914969988Rat
1563861Rpl10-ps14ribosomal protein L10, pseudogene 14181500387215004638Rat
1590736Mapre2microtubule-associated protein, RP/EB family, member 2181502867515169553Rat
41129914LOC120098207uncharacterized LOC120098207181506484215071132Rat
6504280Zfp397zinc finger protein 397181524176415253148Rat
1306095Zscan30zinc finger and SCAN domain containing 30181524514015266204Rat
1312031Zfp35zinc finger protein 35181526885215284334Rat
7699321Pnrc1-ps1proline-rich nuclear receptor coactivator 1. pseudogene 1181529034315294509Rat
727963Zfp24zinc finger protein 24181529568715307319Rat
1310199Ino80cINO80 complex subunit C181537876415398574Rat
620358Galnt1polypeptide N-acetylgalactosaminyltransferase 1181548901515568849Rat
41350816LOC120098426U6 spliceosomal RNA181551852015518626Rat
1559877Rpl29l2ribosomal protein L29 like 2181567143015672027Rat
2325557Mir187microRNA 187181573119415731297Rat
1564673C18h18orf21similar to human chromosome 18 open reading frame 21181577934915786772Rat
1307374Rprd1aregulation of nuclear pre-mRNA domain containing 1A181579141815839338Rat
7678926Rpl32-ps6ribosomal protein L32, pseudogene 6181583163315832047Rat
41307046LOC120098423U6 spliceosomal RNA181585287215852978Rat
1304664Slc39a6solute carrier family 39 member 6181586487415885417Rat
1306419Elp2elongator acetyltransferase complex subunit 2181588594015921564Rat
1308496Mocosmolybdenum cofactor sulfurase181593165915977415Rat
2322319Fhod3formin homology 2 domain containing 3181599307916425796Rat
41369412LOC120098112uncharacterized LOC120098112181607964916090990Rat
1592105Hsc70-ps2heat shock cognate protein 70, pseudogene 2181621046716212736Rat
1310571Tpgs2tubulin polyglutamylase complex subunit 2181643262816489604Rat
1562608Kiaa1328KIAA1328 homolog181648856916776373Rat
1307630Celf4CUGBP, Elav-like family member 4181678657817065045Rat
41149760LOC120098197uncharacterized LOC120098197181707994717092021Rat
9208196LOC103694180uncharacterized LOC103694180181728731017298283Rat
41230128LOC120098439U6 spliceosomal RNA181741828017418367Rat
40942616LOC120098383small nucleolar RNA SNORA17181782146517821596Rat
1591344Spata45-ps1spermatogenesis associated 45, pseudogene 1181812548518125863Rat
7687052LOC102547510uncharacterized LOC102547510181858231618799213Rat
41273281LOC120098419U4 spliceosomal RNA181890879318908908Rat
2321885Rps15-ps18ribosomal protein S15, pseudogene 18181936632419368584Rat
41109350LOC120098395small nucleolar RNA SNORA17181982761519827741Rat
9301181LOC10369417539S ribosomal protein L30, mitochondrial pseudogene182003614220041958Rat
41327931LOC120098443U1 spliceosomal RNA182011027520110438Rat
7641502LOC102546350uncharacterized LOC102546350182011147320130786Rat
41113362LOC120098262uncharacterized LOC120098262182023826120243346Rat
1589056Tsen34-ps1tRNA splicing endonuclease subunit 34, pseudogene 1182047688320478138Rat
41165265Rps29-ps13ribosomal protein S29, pseudogene 13182098242820982760Rat
1591671Vdac1-ps10voltage-dependent anion channel 1, pseudogene 10182108469821085621Rat
7695838LOC102546844uncharacterized LOC102546844182109663621105059Rat
7648889LOC102546931uncharacterized LOC102546931182119168421291797Rat
40990016LOC120098141uncharacterized LOC120098141182147176321570788Rat
1564026Ldha-ps30lactate dehydrogenase A, pseudogene 30182173890921739826Rat
620899Pik3c3phosphatidylinositol 3-kinase, catalytic subunit type 3182184528221934387Rat
41315285LOC120098402small nucleolar RNA SNORA17182205448422054597Rat
41198857LOC120098153uncharacterized LOC120098153182206823022110779Rat
1588518Hspa8-ps19heat shock protein family A (Hsp70) member 8, pseudogene 19182244294622444872Rat
9433650LOC103694950uncharacterized LOC103694950182245930122466852Rat
1307654Rit2Ras-like without CAAX 2182256540322921648Rat
41122946Rpl18-ps3ribosomal protein L18, pseudogene 3182280094422801850Rat
41061823LOC120098263uncharacterized LOC120098263182286871922879737Rat
41003880LOC120098253uncharacterized LOC120098253182294782022955187Rat
68397Syt4synaptotagmin 4182303697323046380Rat
41065389LOC120098376small nucleolar RNA SNORA17182307170523071836Rat
1586633Actb-ps5actin, beta, pseudogene 5182312917123129806Rat
1586622Rpl35l1ribosomal protein L35 like 1182315940123159843Rat
1305072Slc25a46solute carrier family 25, member 46182321595423244917Rat
1311657Sap130Sin3A associated protein 130182324433723345368Rat
1307915Ammecr1lAMMECR1 like182338611423411177Rat
6499927LOC100910201uncharacterized LOC100910201182340323323417959Rat
1308565Polr2dRNA polymerase II subunit D182341809723425228Rat
1309230Wdr33WD repeat domain 33182343223323535460Rat
41115189LOC120098364small nucleolar RNA SNORA21182347861323478747Rat
1561764Sft2d3SFT2 domain containing 3182353710523539305Rat
1305273Lims2LIM zinc finger domain containing 2182355393723592137Rat
1589785Gpr17G protein-coupled receptor 17182357623223583153Rat
1561153Myo7bmyosin VIIb182358830723669841Rat
1584390Potef-ps1POTE ankyrin domain family, member F, pseudogene 1182362651823629132Rat
1304762Iws1interacts with SUPT6H, CTD assembly factor 1182369549623737363Rat
3411Procprotein C, inactivator of coagulation factors Va and VIIIa182376436723774816Rat
620967Map3k2mitogen activated protein kinase kinase kinase 2182380721823879722Rat
1307139Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit182388361323914326Rat
621786Bin1bridging integrator 1182400973124067267Rat
7590894Tex51testis expressed 51182409301524097223Rat
40943294LOC120098229uncharacterized LOC120098229182409705724101106Rat
1310295Gypcglycophorin C182416073824193408Rat
40972159LOC120098297uncharacterized LOC120098297182419345424207788Rat
41059240LOC120098296uncharacterized LOC120098296182420836324212249Rat
41136700LOC120098387small nucleolar RNA SNORA17182423632524236450Rat
1564290Rps27a-ps12ribosomal protein S27a, pseudogene 12182424283624243530Rat
41101543LOC120098381small nucleolar RNA SNORA17182425045024250580Rat
41078696LOC120098181uncharacterized LOC120098181182426174624265324Rat
41015119LOC120098349small nucleolar RNA SNORA62/SNORA6 family182432317024323325Rat
40955952Trnaa-agc30transfer RNA alanine (anticodon AGC) 30182436171824361789Rat
1586479Tslpthymic stromal lymphopoietin182444740924454244Rat
1586463Wdr36WD repeat domain 36182447365724501773Rat
2264Camk4calcium/calmodulin-dependent protein kinase IV182458298824811918Rat
41283036LOC120098266uncharacterized LOC120098266182473052024765008Rat
41217121LOC120098432U6 spliceosomal RNA182477719624777302Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10287D18Wox14148182458653424586682Ratregion
33949D18Mit1496181527559715275693Ratregion
33971D18Mit7204181287462012874824Ratregion
34059D18Mit2100181495133714951437Ratregion
34296D3Mgh24116181499676814996831Ratregion
34550D18Mgh9140182479697724797117Ratregion
11461D18Mit1245181194429911944544Ratregion
11462D18Wox7147181194427311944420Ratregion
33606D18Mit395181963384219633937Ratregion
35521D18Rat29160181352979513529957Ratregion
37020D18Rat37186181730060017300786Ratregion
37908D18Rat67147182301232123012468Ratregion
36548D18Rat27147181800745218007599Ratregion
35803D18Rat25154182004704220047196Ratregion
39682D18Rat106117181367431613674433Ratregion
38350D18Rat38188182206624222066430Ratregion
40592D18Rat132248182473227124732519Ratregion
40622D18Rat47250181704648017046730Ratregion
38632D18Rat72214181746092317461137Ratregion
40096D18Rat102171181927890119279072Ratregion
39230D18Rat70207181704755117047766Ratregion
39326D18Rat66213182476879624769009Ratregion
41520D18Rat104163182206618822066351Ratregion
42421D18Rat146215181303474413034959Ratregion
40926D18Rat105243181690511016905341Ratregion
40926D18Rat105243181690511016905393Ratregion
41572D18Rat103166181953929719539463Ratregion
43111D18Rat148136181490800314908139Ratregion
43113D18Rat131132182375890223759034Ratregion
45568D18Got37248182463080224631052Ratregion
45569D18Got25143182379182723791970Ratregion
45570D18Got23218182388256523882783Ratregion
45571D18Got24212182250712022507332Ratregion
45572D18Got26275182208726222087539Ratregion
45573D18Got22256181981598519816241Ratregion
45575D18Got1894181615410316154197Ratregion
45578D18Got17167181420046514200632Ratregion
45579D18Got14286181287464412874930Ratregion
45581D18Got15278181224271212242990Ratregion
60774D18Wox193181235769312357786Ratregion
60164D18Got19165181546396915464134Ratregion
625832D18Got21229181945092419451153Ratregion
62460D18Uia3198181781924617819444Ratregion
1578830D18Chm25152182128448521284637Ratregion
1578864D18Chm89242181260885612609094Ratregion
1578884D18Chm19210181208366712083877Ratregion
1578885D18Chm6197181593401015934209Ratregion
1578906D18Chm1168182349956423499733Ratregion
1578913D18Chm2225182473526124735488Ratregion
1578949D18Chm91219181220506612205285Ratregion
1578960D18Chm26203182211106422111267Ratregion
1579014D18Chm8164181812599118126155Ratregion
1579032D18Chm90219181271057612710797Ratregion
1579080D18Chm11176182142618621426364Ratregion
1579110D18Chm23208181860604318606255Ratregion
1579116D18Chm24174181975214919752325Ratregion
1579142D18Chm7201181675893416759137Ratregion
1579160D18Chm93237181194890611949143Ratregion
1633713D18Wox23255181195891011959165Ratregion
5038728BB384708101181393280413932905Ratregion
5036265Dtna212181494394314944155Ratregion
5036265Dtna212181494394314944336Ratregion
5033953RH140745125182421205524212180Ratregion
5033953RH140745125182421205524212180Ratregion
5031390PMC156129P1959182404465124045610Ratregion
5031744AU047296198181245421012454409Ratregion
5026454RH132277197181579165015791847Ratregion
5034556BF416056223181460026814600491Ratregion
5026692RH133170187181538045415380641Ratregion
5029237RH144036135182004072020040855Ratregion
5032151RH94561100181239270512392805Ratregion
5032563WI-14403148181242390512424053Ratregion
5035180AW526511164181558197515582139Ratregion
5027529U86405140182406679124066931Ratregion
5032871RH136793243181556766415567907Ratregion
5027705D12S16120181827525018275416Ratregion
5028023MDB1448163181678666016786824Ratregion
5030679BI301716173181550036715500540Ratregion
5025722RH129406186181196184611962032Ratregion
5051927RH94739102181195088311950985Ratregion
5056261RH144276202181578766515787867Ratregion
5056325RH144313173181670624016706413Ratregion
5053789RH142852120181491881214918932Ratregion
5057796BE101561160181513906015139220Ratregion
5055683RH143942120181201445912014579Ratregion
5058684BE096939177181494365114943828Ratregion
5056109RH144188135181529723515297370Ratregion
5056571RH144455163181579360115793764Ratregion
5053109RH142458255181429547414295729Ratregion
5044056RH130384181181203771012037891Ratregion
5044204RH130469181181537887415379055Ratregion
5043260RH129924207182321612623216333Ratregion
5043548RH130088219181578703415787253Ratregion
5046052RH131530206182416088024161086Ratregion
5044598RH130696210181529955315299763Ratregion
5048776RH133099220181530833415308554Ratregion
5045438RH131178194182373291023733104Ratregion
5048016RH132660188182342480423424992Ratregion
5046932RH132038187181488949914890989Ratregion
5047064RH132113217181946153619461753Ratregion
5047070RH132116190181578636715786557Ratregion
5048200RH132766212181556793415568146Ratregion
5048300RH132823217181642554616425763Ratregion
5039460RH127718216182256552722565743Ratregion
5048452RH132912210182324469623244906Ratregion
5048502RH132940205182376448323764688Ratregion
5040078RH128076195181516774315167938Ratregion
5040490RH128313187182387933623879523Ratregion
5042430RH129429202181556845415568656Ratregion
5040734RH128452180181213454112134721Ratregion
5040770RH128473215181643387916434094Ratregion
5040946RH128574210181210415212104362Ratregion
5043212RH129896218181586961815869836Ratregion
5074058RH137794218182334511623345334Ratregion
5075512RH138636141182385960423859745Ratregion
5076278RH139083132182420857624208709Ratregion
5076278RH139083132182420857624208709Ratregion
5076978RH139489206182193410821934314Ratregion
5077056RH139533215182445397224454187Ratregion
5074768RH138207216181525058015250796Ratregion
5075190RH138450241181538393415384175Ratregion
5079500RH141034186182406701024067196Ratregion
5076590RH139264191182303712523037316Ratregion
5079568RH141074189182405983624060025Ratregion
5077350RH139706218181291920212919420Ratregion
5078082RH140133200182420678624206986Ratregion
5078082RH140133200182420678624206986Ratregion
5077830RH139984184181643318516433369Ratregion
5078488RH140372159182256624222566401Ratregion
5079902RH141268207182354582823546065Ratregion
5079048RH140704209182192872521928934Ratregion
5072846RH137088183181581291215813095Ratregion
5072934RH137138216181643273016432946Ratregion
5079362RH140952218181417927514179492Ratregion
5080442RH1415810181652096916521163Ratregion
5080442RH1415810181652096916521163Ratregion
5073806RH137649142181492038414920526Ratregion
5073998RH137760155181696305716963212Ratregion
5074090RH137815181182354075223540933Ratregion
5074238RH137901158181506228815062446Ratregion
5073716RH137597193182479295524793148Ratregion
5072382RH136817159182193415521934314Ratregion
5061690BE105871157182357117223571329Ratregion
5066706AU048199258181569241115692669Ratregion
5067046AU047997180181312563013125810Ratregion
5067598AU047649161181878460518784766Ratregion
5067832AU047509190182436456524364755Ratregion
5068180AU047300199181428923514289432Ratregion
5068326AU047213177182462175624621933Ratregion
5069792AU028670206182396881523969021Ratregion
5060084BF388452123182193217521932298Ratregion
5063662BE107932153182468255824682711Ratregion
5065428AA957632123182387361923873742Ratregion
5060184BF400657105182461902924619134Ratregion
5060464BE110105154182372692523727079Ratregion
5060548BE110321151181597699715977148Ratregion
5060978BF389632128181577750515777633Ratregion
5064364BF399129220182371009323710313Ratregion
5065964BE116335192182349114223491334Ratregion
5064604AI763759185182387836723878552Ratregion
5084234AI013305123181241309512414338Ratregion
5082461BE119476165181479945214799617Ratregion
5082527BE119628174182462060224620776Ratregion
5086528AI228002150181494087914941029Ratregion
5089005AU048898255182184697721847232Ratregion
5089185AU049006113181638053516380590Ratregion
5089185AU049006113181638053516380650Ratregion
5083131BF390827158182338963923389797Ratregion
5083857AI230801190182340497823405168Ratregion
5090321AU049682155182377972223779877Ratregion
5087148BF413078109182373702423737133Ratregion
5085413BQ210126179181556705015567229Ratregion
5090311AU049676240181244233412442576Ratregion
5081412AI502079200181586508515865285Ratregion
5082759BF390037155181414150214141657Ratregion
5086469AA850207209181529581615296025Ratregion
5085260AW532758197181362859813628795Ratregion
5081745BE118002141182372610323726244Ratregion
5085812BF388154156182190898021909136Ratregion
5083793AI412932186182451489924515085Ratregion
5084028AI406932201182341023723410439Ratregion
5503070Zfp191735181529939315300128Ratregion
5503968UniSTS:257001151181468718714687338Ratregion
5499669MARC_7291-7292:992008311:10182353168623533200Ratregion
5500709RH2869873182256606222566135Ratregion
5501219PMC156129P2273182404383024044103Ratregion
5501375STS-Z407081135182473204624733183Ratregion
5501570RH26327163181492033414920497Ratregion
5501802MARC_13470-13471:1002300368:2125181538505915386080Ratregion
5502263C76941205181203785612038058Ratregion
5502735GALNT1958181556240615563364Ratregion
5502413RH124760215181195075711950972Ratregion
Position Markers

Flank 1: (D18Mit1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21811,944,299 - 11,944,544 (-)MAPPER
Rnor_6.01815,539,427 - 15,539,671NCBI
Rnor_5.01815,314,027 - 15,314,271UniSTS
RGSC_v3.41812,406,975 - 12,407,219UniSTS
RGSC_v3.41880,277,473 - 80,277,631RGD
RGSC_v3.11812,433,620 - 12,433,865RGD
Celera1811,951,912 - 11,952,156UniSTS
RH 3.4 Map18134.2UniSTS
RH 3.4 Map18134.2RGD
RH 2.0 Map18760.7RGD
SHRSP x BN Map183.6099RGD
FHH x ACI Map186.08RGD
Cytogenetic Map18pUniSTS
Peak: (D18Mgh7)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01822,603,736 - 22,604,764NCBI
Rnor_6.01822,604,626 - 22,604,764NCBI
Celera1821,275,769 - 21,275,891UniSTS
FHH x ACI Map1812.74RGD
FHH x ACI Map1812.74UniSTS
Cytogenetic Map18 RGD
Flank 2: (D18Mgh9)
Rat AssemblyChrPosition (strand)Source
GRCr81825,071,126 - 25,071,266 (+)Marker Load Pipeline
mRatBN7.21824,796,977 - 24,797,117 (+)MAPPER
Rnor_6.01825,961,026 - 25,961,165NCBI
Rnor_5.01825,675,732 - 25,675,871UniSTS
RGSC_v3.41825,620,885 - 25,621,024UniSTS
RGSC_v3.41825,620,884 - 25,621,024RGD
RGSC_v3.11825,647,530 - 25,647,670RGD
Celera1824,544,575 - 24,544,714UniSTS
RH 3.4 Map18338.4RGD
RH 3.4 Map18338.4UniSTS
RH 2.0 Map18571.8RGD
Cytogenetic Map18p12UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181235778612874620Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl28

RGD Curation Notes
Note Type Note Reference
qtl_general serum HDL value, low salt diet following Lasix injection 70849
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849