Bw157 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw157 (Body weight QTL 157) Rattus norvegicus

Symbol: Bw157
Name: Body weight QTL 157
RGD ID: 8694378
Trait: body lean mass   (VT:0010483)    
Measurement Type: lean tissue morphological measurement   (CMO:0002184)    
LOD Score: 3.59
P Value: 0.001
Variance: 7.5
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81831,990,891 - 76,990,891RGD_MAPPER_PIPELINE
mRatBN7.21829,792,965 - 74,792,965RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01831,361,341 - 76,361,341RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01830,600,568 - 75,600,568RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41832,105,822 - 77,105,822RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157Ratabdominal obesity-metabolic syndrome  IAGP 8694157 RGD 
Bw157RatWeight Gain  IAGP 8694157 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157Ratincreased body weight  IDA 8694157 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157Ratlean tissue morphological measurement  IDA 8694157 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157Ratcontrol condition  IDA 8694157 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157Ratdigital column scale  IDA 8694157 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157RatF344/IcoCrlf  IEA 8694157 RGD 
Bw157RatLOU/NimrOlaHsd  IEA 8694157 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw157Ratbody lean mass  IDA 8694157 RGD 


#
Reference Title
Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.


1 to 20 of 548 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1305276Rell2RELT-like 2182978999629793986Rat
1308240Fchsd1FCH and double SH3 domains 1182979389929804533Rat
1304938Arap3ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3182980621429834217Rat
11369277LOC108348772uncharacterized LOC108348772182998329130000247Rat
1308490Pcdh1protocadherin 1183001169230039679Rat
735029Dele1DAP3 binding cell death enhancer 1183008509330098105Rat
619917Pcdh12protocadherin 12183010372830119307Rat
1589576Rnf14ring finger protein 14183013162730155686Rat
40969390LOC120098448U6 spliceosomal RNA183013293230133034Rat
1585624Gnpda1glucosamine-6-phosphate deaminase 1183016543530177462Rat
41320469LOC120098124uncharacterized LOC120098124183024868730258445Rat
1310053Ndfip1Nedd4 family interacting protein 1183026580830316068Rat
41236582Rpl34-ps10ribosomal protein L34, pseudogene 10183028140630281757Rat
41302367LOC120098127uncharacterized LOC120098127183035758630383465Rat
1305324Spry4sprouty RTK signaling antagonist 4183043651330451426Rat
2605Fgf1fibroblast growth factor 1183068655530772667Rat
41167718LOC120098315uncharacterized LOC120098315183074279630779070Rat
1310923Arhgap26Rho GTPase activating protein 26183083580631237945Rat
41328206Cox7c-ps2Cytochrome c oxidase subunit 7C, pseudogene 2183094480030944969Rat
41402961LOC120098335uncharacterized LOC120098335183108878631096355Rat

1 to 20 of 548 rows
1 to 20 of 750 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10108D18Mgh11341185564260755642948Ratregion
10647D18Wox12140186037761560377755Ratregion
10648D18Wox13163186037759060377753Ratregion
10667D18Mit17117186076313260763249Ratregion
10689D18Mit5122183135940831359530Ratregion
33856D18Mit10225186040871960408944Ratregion
33884D18Mit8147185979647859796643Ratregion
34043D18Mit16148186169831761698465Ratregion
34156D18Mgh1114184698893946989053Ratregion
34182D18Mgh3145186584495065845095Ratregion
34218D18Mgh2183185971223459712417Ratregion
34256D4Mgh18124186205711662057171Ratregion
34270D18Mgh6132186702536067025492Ratregion
34421D15Mgh10109187114739571147526Ratregion
11337D18Wox9242183586942035869662Ratregion
37412D18Rat40154185933040959330563Ratregion
37514D18Rat43227186357104063571267Ratregion
37548D18Rat52195185853611658536311Ratregion
37568D18Rat55100185253976352539863Ratregion
35282D18Rat5143187399714073997283Ratregion
1 to 20 of 750 rows

Peak: (D18Rat57)
Rat AssemblyChrPosition (strand)Source
GRCr81854,490,801 - 54,490,981 (+)Marker Load Pipeline
mRatBN7.21852,292,875 - 52,293,055 (+)MAPPER
Rnor_6.01853,861,252 - 53,861,431NCBI
Rnor_5.01853,100,479 - 53,100,658UniSTS
RGSC_v3.41854,605,733 - 54,605,912UniSTS
RGSC_v3.41854,605,732 - 54,605,912RGD
RGSC_v3.11854,674,164 - 54,674,343RGD
Celera1850,397,794 - 50,397,973UniSTS
RH 3.4 Map18477.92RGD
RH 3.4 Map18477.92UniSTS
RH 2.0 Map18409.0RGD
SHRSP x BN Map1821.6699RGD
FHH x ACI Map1830.38RGD


1 to 10 of 95 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)185880568763636873Rat

1 to 10 of 95 rows


Note Type Note Reference
qtl_general confidence interval 12.5-85.7 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken and adipose tissue from different regions were removed and weighed 8694157
qtl_general software package used: MultiQTL software 8694157