Lox (lysyl oxidase) - Rat Genome Database

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Gene: Lox (lysyl oxidase) Rattus norvegicus
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Symbol: Lox
Name: lysyl oxidase
RGD ID: 3015
Description: Enables copper ion binding activity and protein-lysine 6-oxidase activity. Involved in extracellular matrix organization; response to steroid hormone; and response to xenobiotic stimulus. Acts upstream of or within cell chemotaxis; platelet-derived growth factor receptor-beta signaling pathway; and protein oxidation. Located in extracellular matrix. Used to study abdominal aortic aneurysm; arteriosclerosis; coronary artery disease; coronary restenosis; and hypertension. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome; Menkes disease; colon adenocarcinoma; hypertension; and thoracic aortic aneurysm. Orthologous to human LOX (lysyl oxidase); PARTICIPATES IN hypertension pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H-rev142; Lysyl oxidase (an H-rev gene with its expression down-regulated in HRAS-transformed rat 208F fibroblasts); protein-lysine 6-oxidase; Rrg1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81848,162,889 - 48,175,640 (-)NCBIGRCr8
mRatBN7.21845,964,544 - 45,977,431 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1845,967,343 - 46,041,477 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1848,017,910 - 48,092,296 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01848,730,134 - 48,804,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01846,523,816 - 46,598,201 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01847,500,320 - 47,577,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1847,500,330 - 47,577,819 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01846,713,533 - 46,791,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41847,896,674 - 47,970,829 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11847,931,499 - 47,944,296 (-)NCBI
Celera1844,155,712 - 44,229,997 (-)NCBICelera
Cytogenetic Map18q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
LoxRataortic dissection  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Acute aortic dissectionClinVarPMID:12417550 more ...
LoxRatconnective tissue disease  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Connective tissue disorderClinVarPMID:25741868 and PMID:28492532
LoxRatcutis laxa  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Cutis laxaClinVarPMID:25741868
LoxRatEmphysema  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: EmphysemaClinVarPMID:25741868 and PMID:28492532
LoxRatfamilial adenomatous polyposis 1  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
LoxRatFamilial Thoracic Aortic Aneurysm 1  ISOLOX (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12417550 more ...
LoxRatFamilial Thoracic Aortic Aneurysm 10  ISOLOX (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12417550 more ...
LoxRatgenetic disease  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
LoxRatHereditary Neoplastic Syndromes  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
LoxRatNeurodevelopmental Disorders  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
LoxRatPleural Effusion  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Pleural effusionClinVarPMID:25741868 and PMID:28492532
LoxRatpulmonary emphysema  ISOLOX (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary emphysemaClinVarPMID:25741868 and PMID:28492532
LoxRatthoracic aortic aneurysm  ISOLOX (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12417550 more ...
LoxRatthoracic aortic aneurysm  ISOLOX (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24033266 more ...
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Original Reference(s)
LoxRataortic valve insufficiency  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21216836
LoxRatExperimental Liver Cirrhosis  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
LoxRathepatitis B  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16023247
LoxRathepatitis C  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16023247
LoxRatliver cirrhosis  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26396155
LoxRatoral submucous fibrosis  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16311067
LoxRatosteosarcoma  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23886186
LoxRatPrenatal Injuries  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20045017
LoxRatprimary biliary cholangitis  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16023247
LoxRatpulmonary hypertension  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24614111
LoxRatsilicosis  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:38403151
LoxRatWilson disease  ISOLOX (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16023247
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LoxRatMenkes disease  ISSLox (Mus musculus)13592920OMIM:309400MouseDO 
LoxRatWilliams-Beuren syndrome  ISSLox (Mus musculus)13592920OMIM:194050MouseDO 
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LoxRatFamilial Thoracic Aortic Aneurysm 10  ISOLOX (Homo sapiens)7240710 OMIM 

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Original Reference(s)
LoxRat(-)-epigallocatechin 3-gallate multiple interactionsISOLOX (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of LOX mRNACTDPMID:22079256
LoxRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of LOX mRNACTDPMID:25380136
LoxRat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of LOX mRNACTDPMID:16079270
LoxRat17alpha-ethynylestradiol multiple interactionsISOLox (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of LOX mRNACTDPMID:17942748
LoxRat17beta-estradiol affects expressionISOLOX (Homo sapiens)6480464Estradiol affects the expression of LOX mRNACTDPMID:14699072
LoxRat17beta-estradiol increases expressionISOLOX (Homo sapiens)6480464Estradiol results in increased expression of LOX mRNACTDPMID:36142876
LoxRat17beta-estradiol increases expressionISOLox (Mus musculus)6480464Estradiol results in increased expression of LOX mRNACTDPMID:19484750
LoxRat17beta-estradiol multiple interactionsISOLOX (Homo sapiens)6480464[Estradiol binds to ESR2 protein] which results in increased expression of LOX mRNA more ...CTDPMID:20404318 more ...
LoxRat17beta-estradiol decreases expressionISOLOX (Homo sapiens)6480464Estradiol results in decreased expression of LOX mRNACTDPMID:20106945 and PMID:21632981
LoxRat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOLOX (Homo sapiens)6480464Dihydrotestosterone results in increased expression of LOX mRNACTDPMID:29581250
LoxRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOLox (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of LOX mRNACTDPMID:17942748
LoxRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOLox (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of LOX mRNACTDPMID:16922920 and PMID:27562557
LoxRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOLox (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of LOX mRNACTDPMID:26377647
LoxRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of LOX mRNACTDPMID:16054898 more ...
LoxRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOLOX (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of LOX mRNACTDPMID:20106945 and PMID:21632981
LoxRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of LOX mRNACTDPMID:22298810 and PMID:34747641
LoxRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOLox (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of LOX mRNACTDPMID:19770486
LoxRat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:21724226
LoxRat2,4,6-trinitrobenzenesulfonic acid multiple interactionsISOLox (Mus musculus)6480464Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of LOX mRNA]CTDPMID:18200517
LoxRat2,4,6-trinitrobenzenesulfonic acid increases expressionISOLox (Mus musculus)6480464Trinitrobenzenesulfonic Acid results in increased expression of LOX mRNACTDPMID:17982090 and PMID:18200517

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Biological Process
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Original Reference(s)
LoxRataorta development acts_upstream_of_or_withinISOLox (Mus musculus)1624291 PMID:25807483RGDPMID:25807483
LoxRataorta development acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatascending aorta development acts_upstream_of_or_withinISOLox (Mus musculus)1624291MGI:2657016 PMID:28550176RGDPMID:28550176
LoxRatascending aorta development acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatblood vessel development acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatblood vessel development acts_upstream_of_or_withinISOLox (Mus musculus)1624291MGI:3610732 PMID:12417550RGDPMID:12417550
LoxRatblood vessel morphogenesis involved_inISSUniProtKB:P283011600115GO_REF:0000024UniProtGO_REF:0000024
LoxRatblood vessel morphogenesis involved_inIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatblood vessel morphogenesis involved_inISOLox (Mus musculus)1624291 PMID:27432961RGDPMID:27432961
LoxRatbone mineralization acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatbone mineralization acts_upstream_of_or_withinISOLox (Mus musculus)1624291MGI:3610732 PMID:19458888RGDPMID:19458888
LoxRatcell chemotaxis acts_upstream_of_or_withinIMP 14390060PMID:18586678MGI 
LoxRatcell chemotaxis acts_upstream_of_or_withinISOLox (Mus musculus)1624291MGI:3610732 PMID:18586678RGDPMID:18586678
LoxRatcell chemotaxis acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatcellular response to chemokine acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatcellular response to chemokine acts_upstream_of_or_withinISOLox (Mus musculus)1624291MGI:3610732 PMID:18586678RGDPMID:18586678
LoxRatcollagen fibril organization  IDA 1600668 RGD 
LoxRatcollagen fibril organization acts_upstream_of_or_withinIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatcollagen fibril organization acts_upstream_of_or_withinISOLox (Mus musculus)1624291 PMID:26700732RGDPMID:26700732
LoxRatcollagen fibril organization involved_inIBAMGI:96817 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Original Reference(s)
LoxRatcollagen trimer part_ofISOLox (Mus musculus)1624291 PMID:7901452RGDPMID:7901452
LoxRatcollagen trimer part_ofIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatcollagen-containing extracellular matrix is_active_inIBAPANTHER:PTN008698711 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
LoxRatextracellular matrix located_inIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatextracellular matrix located_inISOLox (Mus musculus)1624291 PMID:18835815 more ...RGDPMID:18835815 more ...
LoxRatextracellular matrix located_inIDA 8553592PMID:16251195MGI 
LoxRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
LoxRatextracellular region located_inIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatextracellular region located_inIEAUniProtKB-SubCell:SL-0112 and UniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
LoxRatextracellular region located_inISOLox (Mus musculus)1624291 PMID:27432961RGDPMID:27432961
LoxRatextracellular space located_inISOLOX (Homo sapiens)1624291 PMID:31152061RGDPMID:31152061
LoxRatextracellular space located_inIEAUniProtKB:P28300 and ensembl:ENSP000002310041600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatextracellular space is_active_inIBAMGI:106096 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
LoxRatextracellular space located_inISSUniProtKB:P283001600115GO_REF:0000024UniProtGO_REF:0000024
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Molecular Function
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Original Reference(s)
LoxRatcollagen binding enablesISSUniProtKB:P283001600115GO_REF:0000024UniProtGO_REF:0000024
LoxRatcollagen binding enablesIEAUniProtKB:P28300 and ensembl:ENSP000002310041600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatcollagen binding enablesISOLOX (Homo sapiens)1624291 PMID:31152061RGDPMID:31152061
LoxRatcopper ion binding  IMP 1600669 RGD 
LoxRatcopper ion binding enablesIEAInterPro:IPR001695 and InterPro:IPR0198281600115GO_REF:0000002InterProGO_REF:0000002
LoxRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
LoxRatmolecular adaptor activity enablesISOLOX (Homo sapiens)1624291ChEBI:16336 more ...RGDPMID:30082873
LoxRatmolecular adaptor activity enablesIEAUniProtKB:P28300 and ensembl:ENSP000002310041600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
LoxRatoxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor enablesIEAInterPro:IPR001695 and InterPro:IPR0198281600115GO_REF:0000002InterProGO_REF:0000002
LoxRatprotein binding enablesISOLOX (Homo sapiens)1624291UniProtKB:O95967 more ...RGDPMID:19570982 more ...
LoxRatprotein binding enablesISOLox (Mus musculus)1624291PR:P28301 more ...RGDPMID:16251195 more ...
LoxRatprotein binding enablesISOLOX (Homo sapiens) and UniProtKB:P28300-PRO_00000185201624291UniProtKB:P00747 more ...RGDPMID:30082873
LoxRatprotein-lysine 6-oxidase activity  IDA 1600668 RGD 
LoxRatprotein-lysine 6-oxidase activity enablesIEAUniProtKB:P28300 and ensembl:ENSP000002310041600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatprotein-lysine 6-oxidase activity enablesIEAUniProtKB:P28301 and ensembl:ENSMUSP000000254091600115GO_REF:0000107EnsemblGO_REF:0000107
LoxRatprotein-lysine 6-oxidase activity enablesISOLox (Mus musculus)1624291 PMID:14140 more ...RGDPMID:14140 more ...
LoxRatprotein-lysine 6-oxidase activity enablesIEARHEA:245441600115GO_REF:0000116RHEAGO_REF:0000116
LoxRatprotein-lysine 6-oxidase activity enablesIEAEC:1.4.3.131600115GO_REF:0000003UniProtGO_REF:0000003
LoxRatprotein-lysine 6-oxidase activity enablesIBAFB:FBgn0039848 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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RGD Manual Annotations


  
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Original Reference(s)
LoxRathypertension pathway  IDA 1581899 RGD 

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#
Reference Title
Reference Citation
1. The role of lysyl oxidase in SRC-dependent proliferation and metastasis of colorectal cancer. Baker AM, etal., J Natl Cancer Inst. 2011 Mar 2;103(5):407-24. doi: 10.1093/jnci/djq569. Epub 2011 Jan 31.
2. Effect of nifedipine and amlodipine on dead space wound healing in rats. Bhaskar HN, etal., Indian J Exp Biol. 2005 Mar;43(3):294-6.
3. Downregulation of lysyl oxidase and upregulation of cellular thiols in rat fetal lung fibroblasts treated with cigarette smoke condensate. Chen LJ, etal., Toxicol Sci. 2005 Feb;83(2):372-9. Epub 2004 Oct 27.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Lysyl oxidase gene expression and enzyme activity in the rat ovary: regulation by follicle-stimulating hormone, androgen, and transforming growth factor-beta superfamily members in vitro. Harlow CR, etal., Endocrinology 2003 Jan;144(1):154-62.
7. Differential regulation of functional gene clusters in overt coronary artery disease in a transgenic atherosclerosis-hypertensive rat model. Herrera VM, etal., Mol Med. 2002 Jul;8(7):367-75.
8. Functional importance of connective tissue repair during the development of experimental abdominal aortic aneurysms. Huffman MD, etal., Surgery. 2000 Sep;128(3):429-38.
9. Expression of mRNAs for lysyl oxidase and type III procollagen in cultured fibroblasts from patients with the Menkes and occipital horn syndromes as determined by quantitative polymerase chain reaction. Kemppainen R, etal., Arch Biochem Biophys. 1996 Apr 1;328(1):101-6.
10. Overexpression of lysyl oxidase to increase matrix crosslinking and improve tissue strength in dermal wound healing. Lau YK, etal., Ann Biomed Eng. 2006 Aug;34(8):1239-46. Epub 2006 Jun 28.
11. Lysyl oxidase oxidizes cell membrane proteins and enhances the chemotactic response of vascular smooth muscle cells. Lucero HA, etal., J Biol Chem. 2008 Aug 29;283(35):24103-17. doi: 10.1074/jbc.M709897200. Epub 2008 Jun 27.
12. Inactivation of the lysyl oxidase gene Lox leads to aortic aneurysms, cardiovascular dysfunction, and perinatal death in mice. Maki JM, etal., Circulation. 2002 Nov 5;106(19):2503-9.
13. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
14. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
15. Fully processed lysyl oxidase catalyst translocates from the extracellular space into nuclei of aortic smooth-muscle cells. Nellaiappan K, etal., J Cell Biochem. 2000 Sep 14;79(4):576-82.
16. Lysyl oxidase expression in a rat model of arterial balloon injury. Nuthakki VK, etal., J Vasc Surg. 2004 Jul;40(1):123-9.
17. Increased lysyl oxidase activity in blood vessels of hypertensive rats and effect of beta-aminopropionitrile on arteriosclerosis. Ooshima A and Midorikawa O, Jpn Circ J. 1977 Dec;41(12):1337-40.
18. GOA pipeline RGD automated data pipeline
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. PKC-MEK-MAPK-dependent signal transduction pathway mediates the stimulation of lysyl oxidase expression by serum and PDGF in rat aortic smooth muscle cells. Smith-Mungo L and Kagan HM, J Cell Biochem 2002;85(4):775-84.
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PMID:14140   PMID:20889   PMID:7873615   PMID:7901452   PMID:9382709   PMID:12577300   PMID:12686140   PMID:14741400   PMID:15489334   PMID:16126250   PMID:16192629   PMID:17584760  
PMID:17673218   PMID:18060869   PMID:18803461   PMID:18835815   PMID:19359664   PMID:19458888   PMID:19683237   PMID:20048148   PMID:20192271   PMID:20484295   PMID:20606470   PMID:20888776  
PMID:21215756   PMID:21498085   PMID:21665949   PMID:21893029   PMID:22205540   PMID:23006535   PMID:23413430   PMID:24006456   PMID:24120383   PMID:24440697   PMID:24650661   PMID:24971753  
PMID:25111273   PMID:25715398   PMID:25807483   PMID:26670953   PMID:26700732   PMID:26755713   PMID:26780438   PMID:26804196   PMID:27169768   PMID:27432961   PMID:28285904   PMID:28538980  
PMID:28550176   PMID:28668305   PMID:28711328   PMID:28800626   PMID:29146187   PMID:29278308   PMID:29502979   PMID:31152061   PMID:32979358   PMID:35011567   PMID:37095518  



Lox
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81848,162,889 - 48,175,640 (-)NCBIGRCr8
mRatBN7.21845,964,544 - 45,977,431 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1845,967,343 - 46,041,477 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1848,017,910 - 48,092,296 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01848,730,134 - 48,804,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01846,523,816 - 46,598,201 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01847,500,320 - 47,577,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1847,500,330 - 47,577,819 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01846,713,533 - 46,791,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41847,896,674 - 47,970,829 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11847,931,499 - 47,944,296 (-)NCBI
Celera1844,155,712 - 44,229,997 (-)NCBICelera
Cytogenetic Map18q11NCBI
LOX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385122,063,195 - 122,078,259 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5122,063,195 - 122,078,413 (-)EnsemblGRCh38hg38GRCh38
GRCh375121,398,890 - 121,413,954 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365121,429,918 - 121,441,853 (-)NCBINCBI36Build 36hg18NCBI36
Build 345121,429,917 - 121,441,853NCBI
Celera5117,353,346 - 117,368,512 (-)NCBICelera
Cytogenetic Map5q23.1NCBI
HuRef5116,590,466 - 116,605,632 (-)NCBIHuRef
CHM1_15120,831,494 - 120,846,659 (-)NCBICHM1_1
T2T-CHM13v2.05122,579,951 - 122,595,014 (-)NCBIT2T-CHM13v2.0
Lox
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391852,649,132 - 52,662,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1852,649,139 - 52,662,939 (-)EnsemblGRCm39 Ensembl
GRCm381852,516,060 - 52,529,867 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1852,516,067 - 52,529,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv371852,676,892 - 52,689,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361852,641,436 - 52,655,072 (-)NCBIMGSCv36mm8
Celera1853,829,941 - 53,842,352 (-)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1828.22NCBI
Lox
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955521185,792 - 193,926 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955521178,290 - 193,926 (-)NCBIChiLan1.0ChiLan1.0
LOX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24117,339,359 - 117,353,228 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15115,491,718 - 115,506,516 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05117,450,833 - 117,464,957 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15123,233,359 - 123,248,658 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5123,234,662 - 123,248,717 (-)Ensemblpanpan1.1panPan2
LOX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,023,645 - 12,040,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,027,250 - 12,039,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,807,698 - 10,821,728 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,730,282 - 12,744,862 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,732,124 - 12,744,691 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,471,714 - 11,486,299 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,289,217 - 11,303,248 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,920,314 - 11,934,905 (-)NCBIUU_Cfam_GSD_1.0
Lox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213134,444,800 - 134,452,726 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365752,524,342 - 2,533,559 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365752,526,067 - 2,533,996 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2125,591,789 - 125,607,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12125,595,115 - 125,607,026 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22130,888,135 - 130,900,048 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12325,158,458 - 25,172,763 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2325,157,269 - 25,172,757 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603453,042,867 - 53,057,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lox
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477420,116,970 - 20,134,355 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477420,116,625 - 20,137,767 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Lox
55 total Variants

Predicted Target Of
Summary Value
Count of predictions:412
Count of miRNA genes:232
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000019844, ENSRNOT00000074226
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat

1 to 10 of 43 rows
D18Got43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21845,988,320 - 45,988,509 (+)MAPPERmRatBN7.2
Rnor_6.01847,524,323 - 47,524,511NCBIRnor6.0
Rnor_5.01846,737,398 - 46,737,586UniSTSRnor5.0
RGSC_v3.41847,917,682 - 47,917,868RGDRGSC3.4
RGSC_v3.41847,917,680 - 47,917,868UniSTSRGSC3.4
RGSC_v3.11847,955,305 - 47,955,491RGD
Celera1844,176,590 - 44,176,778UniSTS
Cytogenetic Map18q11UniSTS
D18Got44  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21846,039,149 - 46,039,354 (+)MAPPERmRatBN7.2
Rnor_6.01847,575,494 - 47,575,696NCBIRnor6.0
Rnor_5.01846,789,042 - 46,789,244UniSTSRnor5.0
RGSC_v3.41847,968,503 - 47,968,706RGDRGSC3.4
RGSC_v3.41847,968,504 - 47,968,706UniSTSRGSC3.4
RGSC_v3.11848,006,126 - 48,006,329RGD
Celera1844,227,672 - 44,227,874UniSTS
Cytogenetic Map18q11UniSTS
D18Chm55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21846,039,157 - 46,039,364 (+)MAPPERmRatBN7.2
Rnor_6.01847,575,502 - 47,575,706NCBIRnor6.0
Rnor_5.01846,789,050 - 46,789,254UniSTSRnor5.0
RGSC_v3.41847,968,512 - 47,968,716UniSTSRGSC3.4
Celera1844,227,680 - 44,227,884UniSTS
Cytogenetic Map18q11UniSTS
RH134457  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21845,964,574 - 45,964,754 (+)MAPPERmRatBN7.2
Rnor_6.01847,500,582 - 47,500,761NCBIRnor6.0
Rnor_5.01846,713,795 - 46,713,974UniSTSRnor5.0
RGSC_v3.41847,893,908 - 47,894,087UniSTSRGSC3.4
Celera1844,152,946 - 44,153,125UniSTS
Cytogenetic Map18q11UniSTS
RH139210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21845,965,564 - 45,965,716 (+)MAPPERmRatBN7.2
Rnor_6.01847,501,572 - 47,501,723NCBIRnor6.0
Rnor_5.01846,714,785 - 46,714,936UniSTSRnor5.0
RGSC_v3.41847,894,898 - 47,895,049UniSTSRGSC3.4
Celera1844,153,936 - 44,154,087UniSTS
Cytogenetic Map18q11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000019844   ⟹   ENSRNOP00000019844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1845,967,343 - 46,041,477 (-)Ensembl
Rnor_6.0 Ensembl1847,503,350 - 47,577,819 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074226   ⟹   ENSRNOP00000065314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1847,500,330 - 47,513,065 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083881   ⟹   ENSRNOP00000068687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1847,504,284 - 47,513,030 (-)Ensembl
RefSeq Acc Id: NM_001414003   ⟹   NP_001400932
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,162,889 - 48,175,640 (-)NCBI
mRatBN7.21845,964,544 - 45,977,295 (-)NCBI
Protein RefSeqs NP_001400932 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52176 (Get FASTA)   NCBI Sequence Viewer  
  AAH78861 (Get FASTA)   NCBI Sequence Viewer  
  EDM14445 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019844
  ENSRNOP00000019844.3
GenBank Protein P16636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000019844   ⟸   ENSRNOT00000019844
Ensembl Acc Id: ENSRNOP00000068687   ⟸   ENSRNOT00000083881
Ensembl Acc Id: ENSRNOP00000065314   ⟸   ENSRNOT00000074226
RefSeq Acc Id: NP_001400932   ⟸   NM_001414003
- Peptide Label: precursor
- UniProtKB: P16636 (UniProtKB/Swiss-Prot),   A6IX14 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-P16636-F1-model_v2 AlphaFold P16636 1-411 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700788
Promoter ID:EPDNEW_R11303
Type:initiation region
Name:Lox_1
Description:lysyl oxidase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01847,513,095 - 47,513,155EPDNEW


1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-7518 BioCyc
Ensembl Genes ENSRNOG00000014426 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019844 ENTREZGENE
  ENSRNOT00000019844.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7113042 IMAGE-MGC_LOAD
InterPro LOX-like_protein UniProtKB/Swiss-Prot
  Lysyl_oxidase UniProtKB/Swiss-Prot
  Lysyl_oxidase_CS UniProtKB/Swiss-Prot
MGC_CLONE MGC:93522 IMAGE-MGC_LOAD
NCBI Gene 24914 ENTREZGENE
PANTHER LYSYL OXIDASE-LIKE-RELATED UniProtKB/Swiss-Prot
  PROTEIN-LYSINE 6-OXIDASE UniProtKB/Swiss-Prot
Pfam Lysyl_oxidase UniProtKB/Swiss-Prot
PhenoGen Lox PhenoGen
PRINTS LYSYLOXIDASE UniProtKB/Swiss-Prot
PROSITE LYSYL_OXIDASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014426 RatGTEx
UniProt A6IX14 ENTREZGENE, UniProtKB/TrEMBL
  LYOX_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Lox  lysyl oxidase      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_process important for regulating the formation and maintenance of extracellular matrix in the ovary 729248