Bmd65 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd65 (Bone mineral density QTL 65) Rattus norvegicus

Symbol: Bmd65
Name: Bone mineral density QTL 65
RGD ID: 2300177
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: volumetric bone mineral density   (CMO:0001553)    
LOD Score: 19.7
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,964,853 - 73,964,853RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01830,533,614 - 75,533,614RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01829,720,732 - 74,720,732RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41831,347,802 - 76,347,802RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Linkage screen for BMD phenotypes in male and female COP and DA rat strains. Koller DL, etal., J Bone Miner Res. 2008 Sep;23(9):1382-8.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D18Rat50)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21851,464,733 - 51,464,973 (+)MAPPER
Rnor_6.01853,033,494 - 53,033,735NCBI
Rnor_5.01852,220,612 - 52,220,853UniSTS
RGSC_v3.41853,847,682 - 53,847,923UniSTS
RGSC_v3.41853,847,683 - 53,847,923RGD
Celera1849,595,166 - 49,595,403UniSTS
RGSC_v3.11853,911,626 - 53,911,866RGD
SHRSP x BN Map1820.5499UniSTS
SHRSP x BN Map1820.5499RGD
FHH x ACI Map1828.7499RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2300109
qtl_general software package: R/qtl software 2300109
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the midfemoral shaft and measurements taken using the XCT Research SA Plus, software version 5.40 2300109
qtl_statistics_details LOD of 10.3 was observed in males and 11.3 in females 2300109