Isoc1 (isochorismatase domain containing 1) - Rat Genome Database

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Gene: Isoc1 (isochorismatase domain containing 1) Rattus norvegicus
Analyze
Symbol: Isoc1
Name: isochorismatase domain containing 1
RGD ID: 1307632
Description: Located in peroxisome. Orthologous to human ISOC1 (isochorismatase domain containing 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Down-regulated in nephrectomized rat kidney #1; down-regulated in nephrectomized rat kidney protein 1; DR-NR#1; DR-NR1; isochorismatase domain-containing protein 1; LOC103694869; LOC364879; RGD1307632; similar to tumor-related protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,356,757 - 54,377,170 (+)NCBIGRCr8
mRatBN7.21852,158,790 - 52,179,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,158,790 - 52,178,703 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1854,182,706 - 54,203,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01854,897,271 - 54,917,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01852,709,462 - 52,729,877 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01853,727,203 - 53,747,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1853,727,209 - 53,745,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,008,359 - 53,028,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,471,690 - 54,492,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11854,535,657 - 54,556,067 (+)NCBI
Celera1850,269,258 - 50,289,538 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP,ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
genistein  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
nefazodone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propiconazole  (EXP,ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
tributylstannane  (EXP)
trichloroethene  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
peroxisome  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease. Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15200410   PMID:23376485  


Genomics

Comparative Map Data
Isoc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,356,757 - 54,377,170 (+)NCBIGRCr8
mRatBN7.21852,158,790 - 52,179,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,158,790 - 52,178,703 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1854,182,706 - 54,203,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01854,897,271 - 54,917,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01852,709,462 - 52,729,877 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01853,727,203 - 53,747,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1853,727,209 - 53,745,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,008,359 - 53,028,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,471,690 - 54,492,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11854,535,657 - 54,556,067 (+)NCBI
Celera1850,269,258 - 50,289,538 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
ISOC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385129,094,749 - 129,114,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5129,094,749 - 129,114,028 (+)EnsemblGRCh38hg38GRCh38
GRCh375128,430,442 - 128,449,721 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365128,458,341 - 128,477,620 (+)NCBINCBI36Build 36hg18NCBI36
Build 345128,458,338 - 128,477,730NCBI
Celera5124,561,590 - 124,580,869 (+)NCBICelera
Cytogenetic Map5q23.3NCBI
HuRef5123,621,725 - 123,641,469 (+)NCBIHuRef
CHM1_15127,863,093 - 127,882,374 (+)NCBICHM1_1
T2T-CHM13v2.05129,597,478 - 129,632,738 (+)NCBIT2T-CHM13v2.0
Isoc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391858,792,554 - 58,812,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1858,792,538 - 58,813,440 (+)EnsemblGRCm39 Ensembl
GRCm381858,659,482 - 58,679,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1858,659,466 - 58,680,368 (+)EnsemblGRCm38mm10GRCm38
MGSCv371858,819,136 - 58,839,224 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361858,784,851 - 58,804,939 (+)NCBIMGSCv36mm8
Celera1859,962,819 - 59,982,937 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1833.71NCBI
Isoc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554152,091,857 - 2,110,374 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554152,091,857 - 2,110,313 (+)NCBIChiLan1.0ChiLan1.0
ISOC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24124,402,367 - 124,421,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15122,541,929 - 122,561,338 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05124,508,166 - 124,527,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15130,270,416 - 130,289,582 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5130,270,123 - 130,289,570 (+)Ensemblpanpan1.1panPan2
ISOC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,011,330 - 18,029,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,012,333 - 18,028,489 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,807,451 - 16,825,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,760,942 - 18,778,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,760,942 - 18,778,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,480,530 - 17,498,517 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,319,280 - 17,337,261 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,931,905 - 17,950,287 (+)NCBIUU_Cfam_GSD_1.0
Isoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213140,681,736 - 140,704,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365042,255,177 - 2,278,113 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365042,255,702 - 2,276,356 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ISOC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2131,857,168 - 131,877,631 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12131,857,126 - 131,877,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,198,549 - 137,219,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ISOC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12332,039,732 - 32,059,821 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2332,039,811 - 32,059,848 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603445,976,316 - 45,996,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Isoc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477412,220,031 - 12,244,746 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Isoc1
139 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:149
Interacting mature miRNAs:169
Transcripts:ENSRNOT00000026706
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat

Markers in Region
RH132613  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21852,177,519 - 52,177,701 (+)MAPPERmRatBN7.2
Rnor_6.01853,745,926 - 53,746,107NCBIRnor6.0
Rnor_5.01853,009,864 - 53,010,045UniSTSRnor5.0
RGSC_v3.41854,490,413 - 54,490,594UniSTSRGSC3.4
Celera1850,287,852 - 50,288,033UniSTS
RH 3.4 Map18505.8UniSTS
Cytogenetic Map18q12.1UniSTS
RH134325  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21852,178,697 - 52,178,895 (+)MAPPERmRatBN7.2
Rnor_6.01853,747,104 - 53,747,301NCBIRnor6.0
Rnor_5.01853,008,670 - 53,008,867UniSTSRnor5.0
RGSC_v3.41854,491,591 - 54,491,788UniSTSRGSC3.4
Celera1850,289,030 - 50,289,227UniSTS
RH 3.4 Map18508.5UniSTS
Cytogenetic Map18q12.1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000026706   ⟹   ENSRNOP00000026706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1852,158,790 - 52,178,703 (+)Ensembl
Rnor_6.0 Ensembl1853,727,209 - 53,745,200 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099120   ⟹   ENSRNOP00000086734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1852,158,796 - 52,178,703 (+)Ensembl
RefSeq Acc Id: NM_001014242   ⟹   NP_001014264
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,356,757 - 54,377,170 (+)NCBI
mRatBN7.21852,158,790 - 52,179,206 (+)NCBI
Rnor_6.01853,727,203 - 53,747,612 (+)NCBI
Rnor_5.01853,008,359 - 53,028,768 (-)NCBI
RGSC_v3.41854,471,690 - 54,492,099 (+)RGD
Celera1850,269,258 - 50,289,538 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001014264 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAD23894 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026706
  ENSRNOP00000026706.4
  ENSRNOP00000086734.1
GenBank Protein Q6I7R3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001014264   ⟸   NM_001014242
- UniProtKB: Q6I7R3 (UniProtKB/Swiss-Prot),   F2Z3T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026706   ⟸   ENSRNOT00000026706
RefSeq Acc Id: ENSRNOP00000086734   ⟸   ENSRNOT00000099120
Protein Domains
Isochorismatase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F2Z3T7-F1-model_v2 AlphaFold F2Z3T7 1-297 view protein structure
AF-Q6I7R3-F1-model_v2 AlphaFold Q6I7R3 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700798
Promoter ID:EPDNEW_R11321
Type:multiple initiation site
Name:Isoc1_1
Description:isochorismatase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01853,727,196 - 53,727,256EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307632 AgrOrtholog
Ensembl Genes ENSRNOG00000019711 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026706 ENTREZGENE
  ENSRNOT00000026706.6 UniProtKB/TrEMBL
  ENSRNOT00000099120.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.850 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Isochorismatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Isochorismatase-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:364879 UniProtKB/Swiss-Prot
NCBI Gene 364879 ENTREZGENE
PANTHER HYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ISOCHORISMATASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Isochorismatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Isoc1 PhenoGen
RatGTEx ENSRNOG00000019711 RatGTEx
Superfamily-SCOP SSF52499 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GF98_RAT UniProtKB/TrEMBL
  F2Z3T7 ENTREZGENE, UniProtKB/TrEMBL
  ISOC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Isoc1  isochorismatase domain containing 1  LOC103694869  isochorismatase domain-containing protein 1  Data merged from RGD:9465707 737654 PROVISIONAL
2014-08-25 LOC103694869  isochorismatase domain-containing protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Isoc1  isochorismatase domain containing 1  RGD1307632  similar to tumor-related protein  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1307632  similar to tumor-related protein  RGD1307632_predicted  similar to tumor-related protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307632_predicted  similar to tumor-related protein (predicted)  LOC364879_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC364879_predicted  similar to tumor-related protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL