ISOC1 (isochorismatase domain containing 1) - Rat Genome Database

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Gene: ISOC1 (isochorismatase domain containing 1) Canis lupus familiaris
Analyze
Symbol: ISOC1
Name: isochorismatase domain containing 1
RGD ID: 12286949
Description: ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isochorismatase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,011,330 - 18,029,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,012,333 - 18,028,489 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,807,451 - 16,825,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,760,942 - 18,778,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,760,942 - 18,778,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,480,530 - 17,498,517 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,319,280 - 17,337,261 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,931,905 - 17,950,287 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
peroxisome  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ISOC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,011,330 - 18,029,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,012,333 - 18,028,489 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,807,451 - 16,825,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,760,942 - 18,778,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,760,942 - 18,778,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,480,530 - 17,498,517 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,319,280 - 17,337,261 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,931,905 - 17,950,287 (+)NCBIUU_Cfam_GSD_1.0
ISOC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385129,094,749 - 129,114,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5129,094,749 - 129,114,028 (+)EnsemblGRCh38hg38GRCh38
GRCh375128,430,442 - 128,449,721 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365128,458,341 - 128,477,620 (+)NCBINCBI36Build 36hg18NCBI36
Build 345128,458,338 - 128,477,730NCBI
Celera5124,561,590 - 124,580,869 (+)NCBICelera
Cytogenetic Map5q23.3NCBI
HuRef5123,621,725 - 123,641,469 (+)NCBIHuRef
CHM1_15127,863,093 - 127,882,374 (+)NCBICHM1_1
T2T-CHM13v2.05129,597,478 - 129,632,738 (+)NCBIT2T-CHM13v2.0
Isoc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391858,792,554 - 58,812,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1858,792,538 - 58,813,440 (+)EnsemblGRCm39 Ensembl
GRCm381858,659,482 - 58,679,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1858,659,466 - 58,680,368 (+)EnsemblGRCm38mm10GRCm38
MGSCv371858,819,136 - 58,839,224 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361858,784,851 - 58,804,939 (+)NCBIMGSCv36mm8
Celera1859,962,819 - 59,982,937 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1833.71NCBI
Isoc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,356,757 - 54,377,170 (+)NCBIGRCr8
mRatBN7.21852,158,790 - 52,179,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,158,790 - 52,178,703 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1854,182,706 - 54,203,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01854,897,271 - 54,917,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01852,709,462 - 52,729,877 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01853,727,203 - 53,747,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1853,727,209 - 53,745,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,008,359 - 53,028,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,471,690 - 54,492,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11854,535,657 - 54,556,067 (+)NCBI
Celera1850,269,258 - 50,289,538 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Isoc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554152,091,857 - 2,110,374 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554152,091,857 - 2,110,313 (+)NCBIChiLan1.0ChiLan1.0
ISOC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24124,402,367 - 124,421,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15122,541,929 - 122,561,338 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05124,508,166 - 124,527,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15130,270,416 - 130,289,582 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5130,270,123 - 130,289,570 (+)Ensemblpanpan1.1panPan2
Isoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213140,681,736 - 140,704,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365042,255,177 - 2,278,113 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365042,255,702 - 2,276,356 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ISOC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2131,857,168 - 131,877,631 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12131,857,126 - 131,877,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,198,549 - 137,219,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ISOC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12332,039,732 - 32,059,821 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2332,039,811 - 32,059,848 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603445,976,316 - 45,996,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Isoc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477412,220,031 - 12,244,746 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ISOC1
198 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 1 6 6 6 12 8 10 6
Low 5
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000001119   ⟹   ENSCAFP00000001028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1118,012,333 - 18,028,489 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012697   ⟹   ENSCAFP00845009906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1118,760,942 - 18,778,934 (+)Ensembl
RefSeq Acc Id: XM_003431591   ⟹   XP_003431639
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11118,011,330 - 18,029,330 (+)NCBI
Dog10K_Boxer_Tasha1116,807,451 - 16,825,469 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038489991   ⟹   XP_038345919
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11117,480,530 - 17,498,517 (+)NCBI
RefSeq Acc Id: XM_038552062   ⟹   XP_038407990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01117,931,905 - 17,950,287 (+)NCBI
RefSeq Acc Id: XM_038615925   ⟹   XP_038471853
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01117,319,280 - 17,337,261 (+)NCBI
RefSeq Acc Id: XM_038681419   ⟹   XP_038537347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01118,760,942 - 18,778,889 (+)NCBI
RefSeq Acc Id: XP_003431639   ⟸   XM_003431591
- UniProtKB: A0A8C0P851 (UniProtKB/TrEMBL),   A0A8I3RV78 (UniProtKB/TrEMBL),   A0A8C0YST5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000001028   ⟸   ENSCAFT00000001119
RefSeq Acc Id: XP_038345919   ⟸   XM_038489991
RefSeq Acc Id: XP_038471853   ⟸   XM_038615925
RefSeq Acc Id: XP_038537347   ⟸   XM_038681419
- UniProtKB: A0A8C0P851 (UniProtKB/TrEMBL),   A0A8I3RV78 (UniProtKB/TrEMBL),   A0A8C0YST5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407990   ⟸   XM_038552062
- UniProtKB: A0A8C0P851 (UniProtKB/TrEMBL),   A0A8C0YST5 (UniProtKB/TrEMBL),   A0A8I3RV78 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845009906   ⟸   ENSCAFT00845012697
Protein Domains
Isochorismatase-like

Promoters
RGD ID:13685157
Promoter ID:EPDNEW_C3226
Type:initiation region
Name:ISOC1_1
Description:isochorismatase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11118,011,329 - 18,011,389EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000721 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021560 UniProtKB/TrEMBL
  ENSCAFG00040009473 UniProtKB/TrEMBL
  ENSCAFG00845007166 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001119.6 UniProtKB/TrEMBL
  ENSCAFT00030039580.1 UniProtKB/TrEMBL
  ENSCAFT00040017641.1 UniProtKB/TrEMBL
  ENSCAFT00845012697 ENTREZGENE
  ENSCAFT00845012697.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.850 UniProtKB/TrEMBL
InterPro Isochorismatase-like UniProtKB/TrEMBL
  Isochorismatase-like_sf UniProtKB/TrEMBL
NCBI Gene ISOC1 ENTREZGENE
PANTHER HYDROLASE UniProtKB/TrEMBL
  ISOCHORISMATASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Isochorismatase UniProtKB/TrEMBL
Superfamily-SCOP SSF52499 UniProtKB/TrEMBL
UniProt A0A8C0P851 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YST5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RV78 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42112 ENTREZGENE