ISOC1 (isochorismatase domain containing 1) - Rat Genome Database

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Gene: ISOC1 (isochorismatase domain containing 1) Sus scrofa
Analyze
Symbol: ISOC1
Name: isochorismatase domain containing 1
RGD ID: 14174302
Description: ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isochorismatase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2131,857,168 - 131,877,631 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12131,857,126 - 131,877,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,198,549 - 137,219,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
peroxisome  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:15679890   PMID:30032202  


Genomics

Comparative Map Data
ISOC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2131,857,168 - 131,877,631 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12131,857,126 - 131,877,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,198,549 - 137,219,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ISOC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385129,094,749 - 129,114,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5129,094,749 - 129,114,028 (+)EnsemblGRCh38hg38GRCh38
GRCh375128,430,442 - 128,449,721 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365128,458,341 - 128,477,620 (+)NCBINCBI36Build 36hg18NCBI36
Build 345128,458,338 - 128,477,730NCBI
Celera5124,561,590 - 124,580,869 (+)NCBICelera
Cytogenetic Map5q23.3NCBI
HuRef5123,621,725 - 123,641,469 (+)NCBIHuRef
CHM1_15127,863,093 - 127,882,374 (+)NCBICHM1_1
T2T-CHM13v2.05129,597,478 - 129,632,738 (+)NCBIT2T-CHM13v2.0
Isoc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391858,792,554 - 58,812,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1858,792,538 - 58,813,440 (+)EnsemblGRCm39 Ensembl
GRCm381858,659,482 - 58,679,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1858,659,466 - 58,680,368 (+)EnsemblGRCm38mm10GRCm38
MGSCv371858,819,136 - 58,839,224 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361858,784,851 - 58,804,939 (+)NCBIMGSCv36mm8
Celera1859,962,819 - 59,982,937 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1833.71NCBI
Isoc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,356,757 - 54,377,170 (+)NCBIGRCr8
mRatBN7.21852,158,790 - 52,179,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,158,790 - 52,178,703 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1854,182,706 - 54,203,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01854,897,271 - 54,917,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01852,709,462 - 52,729,877 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01853,727,203 - 53,747,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1853,727,209 - 53,745,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,008,359 - 53,028,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,471,690 - 54,492,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11854,535,657 - 54,556,067 (+)NCBI
Celera1850,269,258 - 50,289,538 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Isoc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554152,091,857 - 2,110,374 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554152,091,857 - 2,110,313 (+)NCBIChiLan1.0ChiLan1.0
ISOC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24124,402,367 - 124,421,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15122,541,929 - 122,561,338 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05124,508,166 - 124,527,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15130,270,416 - 130,289,582 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5130,270,123 - 130,289,570 (+)Ensemblpanpan1.1panPan2
ISOC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,011,330 - 18,029,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,012,333 - 18,028,489 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,807,451 - 16,825,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,760,942 - 18,778,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,760,942 - 18,778,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,480,530 - 17,498,517 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,319,280 - 17,337,261 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,931,905 - 17,950,287 (+)NCBIUU_Cfam_GSD_1.0
Isoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213140,681,736 - 140,704,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365042,255,177 - 2,278,113 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365042,255,702 - 2,276,356 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ISOC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12332,039,732 - 32,059,821 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2332,039,811 - 32,059,848 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603445,976,316 - 45,996,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Isoc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477412,220,031 - 12,244,746 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ISOC1
1030 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 4 3 5 1 14 2 3
Low 6 1 9 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000015579   ⟹   ENSSSCP00000015167
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2131,857,168 - 131,877,631 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081422   ⟹   ENSSSCP00000063773
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2131,857,168 - 131,877,631 (+)Ensembl
RefSeq Acc Id: XM_003123901   ⟹   XP_003123949
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12131,857,126 - 131,877,873 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003123949   ⟸   XM_003123901
- UniProtKB: F1RKJ9 (UniProtKB/TrEMBL),   A0A4X1UG14 (UniProtKB/TrEMBL),   A0A480V345 (UniProtKB/TrEMBL),   A0A8D1X7X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000015167   ⟸   ENSSSCT00000015579
RefSeq Acc Id: ENSSSCP00000063773   ⟸   ENSSSCT00000081422
Protein Domains
Isochorismatase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015015620 UniProtKB/TrEMBL
  ENSSSCG00025003574 UniProtKB/TrEMBL
  ENSSSCG00030064994 UniProtKB/TrEMBL
  ENSSSCG00035056589 UniProtKB/TrEMBL
  ENSSSCG00040075938 UniProtKB/TrEMBL
  ENSSSCG00045030789 UniProtKB/TrEMBL
  ENSSSCG00050049315 UniProtKB/TrEMBL
  ENSSSCG00055025831 UniProtKB/TrEMBL
  ENSSSCG00060025531 UniProtKB/TrEMBL
  ENSSSCG00065002612 UniProtKB/TrEMBL
  ENSSSCG00070017555 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015579 ENTREZGENE
  ENSSSCT00000015579.5 UniProtKB/TrEMBL
  ENSSSCT00000081422.1 UniProtKB/TrEMBL
  ENSSSCT00015020714.1 UniProtKB/TrEMBL
  ENSSSCT00025004705.1 UniProtKB/TrEMBL
  ENSSSCT00030090847.1 UniProtKB/TrEMBL
  ENSSSCT00035075590.1 UniProtKB/TrEMBL
  ENSSSCT00040105583.1 UniProtKB/TrEMBL
  ENSSSCT00045052447.1 UniProtKB/TrEMBL
  ENSSSCT00050067105.1 UniProtKB/TrEMBL
  ENSSSCT00055051044.1 UniProtKB/TrEMBL
  ENSSSCT00060034617.1 UniProtKB/TrEMBL
  ENSSSCT00065003319.1 UniProtKB/TrEMBL
  ENSSSCT00065003327.1 UniProtKB/TrEMBL
  ENSSSCT00070034640.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.850 UniProtKB/TrEMBL
InterPro Isochorismatase-like UniProtKB/TrEMBL
  Isochorismatase-like_sf UniProtKB/TrEMBL
KEGG Report ssc:100517640 UniProtKB/TrEMBL
NCBI Gene ISOC1 ENTREZGENE
PANTHER HYDROLASE UniProtKB/TrEMBL
  ISOCHORISMATASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Isochorismatase UniProtKB/TrEMBL
Superfamily-SCOP SSF52499 UniProtKB/TrEMBL
UniProt A0A480V345 ENTREZGENE
  A0A4X1UG14 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QNV7_PIG UniProtKB/TrEMBL
  A0A8D1X7X7 ENTREZGENE, UniProtKB/TrEMBL
  F1RKJ9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480V345 UniProtKB/TrEMBL
VGNC ID VGNC:99766 ENTREZGENE