Tcerg1 (transcription elongation regulator 1) - Rat Genome Database

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Gene: Tcerg1 (transcription elongation regulator 1) Rattus norvegicus
Analyze
Symbol: Tcerg1
Name: transcription elongation regulator 1
RGD ID: 1311748
Description: Predicted to enable several functions, including enzyme binding activity; identical protein binding activity; and proline-rich region binding activity. Predicted to be involved in RNA processing and regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human TCERG1 (transcription elongation regulator 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ca150; coactivator of 150 kD; LOC307474; transcription elongation regulator 1 (CA150)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21834,505,708 - 34,566,470 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1834,505,751 - 34,566,470 (+)Ensembl
Rnor_6.01836,796,290 - 36,889,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1836,829,062 - 36,889,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01836,491,800 - 36,552,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41835,716,853 - 35,778,041 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11835,752,130 - 35,813,071 (+)NCBI
Celera1834,100,586 - 34,161,245 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16641246   PMID:17060612   PMID:17915251   PMID:20956529   PMID:22082260   PMID:22658674   PMID:22681889   PMID:22871113   PMID:31505169  


Genomics

Comparative Map Data
Tcerg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21834,505,708 - 34,566,470 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1834,505,751 - 34,566,470 (+)Ensembl
Rnor_6.01836,796,290 - 36,889,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1836,829,062 - 36,889,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01836,491,800 - 36,552,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41835,716,853 - 35,778,041 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11835,752,130 - 35,813,071 (+)NCBI
Celera1834,100,586 - 34,161,245 (+)NCBICelera
Cytogenetic Map18p11NCBI
TCERG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385146,447,330 - 146,511,961 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5146,447,311 - 146,511,961 (+)EnsemblGRCh38hg38GRCh38
GRCh375145,826,893 - 145,891,524 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365145,807,066 - 145,871,262 (+)NCBINCBI36hg18NCBI36
Build 345145,807,086 - 145,871,263NCBI
Celera5141,908,056 - 141,972,523 (+)NCBI
Cytogenetic Map5q32NCBI
HuRef5140,973,807 - 141,037,975 (+)NCBIHuRef
CHM1_15145,259,570 - 145,323,747 (+)NCBICHM1_1
T2T-CHM13v2.05146,983,202 - 147,047,833 (+)NCBI
Tcerg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391842,644,369 - 42,708,850 (+)NCBIGRCm39mm39
GRCm39 Ensembl1842,644,552 - 42,708,858 (+)Ensembl
GRCm381842,511,304 - 42,575,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1842,511,487 - 42,575,793 (+)EnsemblGRCm38mm10GRCm38
MGSCv371842,671,141 - 42,735,439 (+)NCBIGRCm37mm9NCBIm37
MGSCv361842,637,460 - 42,701,758 (+)NCBImm8
Celera1843,879,237 - 43,945,169 (+)NCBICelera
Cytogenetic Map18B3NCBI
Tcerg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554157,597,557 - 7,663,207 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554157,597,557 - 7,665,215 (-)NCBIChiLan1.0ChiLan1.0
TCERG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15147,908,980 - 147,972,277 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5147,908,980 - 147,972,277 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05141,895,031 - 141,959,180 (+)NCBIMhudiblu_PPA_v0panPan3
TCERG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1240,855,973 - 40,920,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl240,856,045 - 40,919,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,899,744 - 37,965,565 (+)NCBI
ROS_Cfam_1.0241,312,051 - 41,377,909 (+)NCBI
ROS_Cfam_1.0 Ensembl241,312,109 - 41,376,355 (+)Ensembl
UMICH_Zoey_3.1238,385,809 - 38,451,602 (+)NCBI
UNSW_CanFamBas_1.0239,195,826 - 39,261,464 (+)NCBI
UU_Cfam_GSD_1.0240,021,300 - 40,087,005 (+)NCBI
Tcerg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213146,608,153 - 146,673,742 (-)NCBI
SpeTri2.0NW_0049365048,182,126 - 8,247,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCERG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2147,789,270 - 147,853,320 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12147,789,225 - 147,852,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22154,268,895 - 154,345,080 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCERG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12349,026,214 - 49,089,996 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2349,026,250 - 49,090,063 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603428,700,070 - 28,764,005 (-)NCBIVero_WHO_p1.0
Tcerg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247745,922,477 - 5,994,415 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247745,925,737 - 5,991,861 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH130687  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21834,565,936 - 34,566,134 (+)MAPPERmRatBN7.2
Rnor_6.01836,889,433 - 36,889,630NCBIRnor6.0
Rnor_5.01836,552,194 - 36,552,391UniSTSRnor5.0
RGSC_v3.41835,777,508 - 35,777,705UniSTSRGSC3.4
Celera1834,160,712 - 34,160,909UniSTS
Cytogenetic Map18p11UniSTS
Taf2s  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22201,239,298 - 201,239,660 (+)MAPPERmRatBN7.2
mRatBN7.21834,565,423 - 34,565,676 (+)MAPPERmRatBN7.2
Rnor_6.01836,888,920 - 36,889,172NCBIRnor6.0
Rnor_6.02216,320,088 - 216,320,449NCBIRnor6.0
Rnor_5.01836,551,681 - 36,551,933UniSTSRnor5.0
Rnor_5.02245,836,205 - 245,836,566UniSTSRnor5.0
RGSC_v3.42209,414,588 - 209,414,949UniSTSRGSC3.4
RGSC_v3.41835,776,995 - 35,777,247UniSTSRGSC3.4
Celera1834,160,199 - 34,160,451UniSTS
Celera2193,800,130 - 193,800,490UniSTS
Cytogenetic Map2q41UniSTS
Cytogenetic Map18p11UniSTS
MARC_9990-9991:997195997:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21834,527,105 - 34,528,197 (+)MAPPERmRatBN7.2
mRatBN7.22201,237,526 - 201,237,628 (+)MAPPERmRatBN7.2
Rnor_6.02216,318,316 - 216,318,417NCBIRnor6.0
Rnor_6.01836,850,635 - 36,851,726NCBIRnor6.0
Rnor_5.01836,513,396 - 36,514,487UniSTSRnor5.0
Rnor_5.02245,834,433 - 245,834,534UniSTSRnor5.0
RGSC_v3.42209,412,816 - 209,412,917UniSTSRGSC3.4
RGSC_v3.41835,738,601 - 35,739,692UniSTSRGSC3.4
Celera1834,121,824 - 34,122,915UniSTS
Celera2193,798,358 - 193,798,459UniSTS
Cytogenetic Map2q41UniSTS
Cytogenetic Map18p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:625
Count of miRNA genes:283
Interacting mature miRNAs:361
Transcripts:ENSRNOT00000025467
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 54 38 19 38 8 10 74 35 41 11 8
Low 2 3 3 3 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_361332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025467   ⟹   ENSRNOP00000025467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1834,505,751 - 34,566,470 (+)Ensembl
Rnor_6.0 Ensembl1836,829,062 - 36,889,966 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086979   ⟹   ENSRNOP00000073243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1834,505,779 - 34,566,231 (+)Ensembl
Rnor_6.0 Ensembl1836,829,090 - 36,889,725 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106966   ⟹   ENSRNOP00000094140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1834,505,751 - 34,566,248 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116807   ⟹   ENSRNOP00000094971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1834,505,751 - 34,566,470 (+)Ensembl
RefSeq Acc Id: NM_001107390   ⟹   NP_001100860
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,751 - 34,566,470 (+)NCBI
Rnor_6.01836,829,062 - 36,889,966 (+)NCBI
Rnor_5.01836,491,800 - 36,552,727 (+)NCBI
RGSC_v3.41835,716,853 - 35,778,041 (+)RGD
Celera1834,100,586 - 34,161,245 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254673   ⟹   XP_006254735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,566,285 (+)NCBI
Rnor_6.01836,829,054 - 36,889,730 (+)NCBI
Rnor_5.01836,491,800 - 36,552,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254674   ⟹   XP_006254736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,566,234 (+)NCBI
Rnor_6.01836,829,054 - 36,889,730 (+)NCBI
Rnor_5.01836,491,800 - 36,552,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254675   ⟹   XP_006254737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,565,390 (+)NCBI
Rnor_6.01836,829,054 - 36,889,730 (+)NCBI
Rnor_5.01836,491,800 - 36,552,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600960   ⟹   XP_017456449
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,516,577 - 34,566,285 (+)NCBI
Rnor_6.01836,841,204 - 36,889,730 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096854   ⟹   XP_038952782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,566,285 (+)NCBI
RefSeq Acc Id: XM_039096855   ⟹   XP_038952783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,528,200 - 34,566,285 (+)NCBI
RefSeq Acc Id: XR_005496033
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,551,759 (+)NCBI
RefSeq Acc Id: XR_005496034
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,555,046 (+)NCBI
RefSeq Acc Id: XR_005496035
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,555,046 (+)NCBI
RefSeq Acc Id: XR_361332
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21834,505,708 - 34,565,391 (+)NCBI
Rnor_6.01836,829,054 - 36,888,887 (+)NCBI
Rnor_5.01836,491,800 - 36,552,727 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001100860   ⟸   NM_001107390
- UniProtKB: D3ZTL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254735   ⟸   XM_006254673
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254736   ⟸   XM_006254674
- Peptide Label: isoform X2
- UniProtKB: B5DEZ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254737   ⟸   XM_006254675
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456449   ⟸   XM_017600960
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000025467   ⟸   ENSRNOT00000025467
RefSeq Acc Id: ENSRNOP00000073243   ⟸   ENSRNOT00000086979
RefSeq Acc Id: XP_038952782   ⟸   XM_039096854
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952783   ⟸   XM_039096855
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000094140   ⟸   ENSRNOT00000106966
RefSeq Acc Id: ENSRNOP00000094971   ⟸   ENSRNOT00000116807
Protein Domains
FF   WW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTL0-F1-model_v2 AlphaFold D3ZTL0 1-1081 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700751
Promoter ID:EPDNEW_R11275
Type:multiple initiation site
Name:Tcerg1_1
Description:transcription elongation regulator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01836,829,085 - 36,829,145EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
18 35740362 35740363 T C snv WN/N (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311748 AgrOrtholog
BioCyc Gene G2FUF-7697 BioCyc
Ensembl Genes ENSRNOG00000018849 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025467 ENTREZGENE
  ENSRNOP00000025467.5 UniProtKB/TrEMBL
  ENSRNOP00000073243 ENTREZGENE
  ENSRNOP00000073243.1 UniProtKB/TrEMBL
  ENSRNOP00000094140.1 UniProtKB/TrEMBL
  ENSRNOP00000094971 ENTREZGENE
  ENSRNOP00000094971.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025467 ENTREZGENE
  ENSRNOT00000025467.7 UniProtKB/TrEMBL
  ENSRNOT00000086979 ENTREZGENE
  ENSRNOT00000086979.2 UniProtKB/TrEMBL
  ENSRNOT00000106966.1 UniProtKB/TrEMBL
  ENSRNOT00000116807 ENTREZGENE
  ENSRNOT00000116807.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.440 UniProtKB/TrEMBL
InterPro FF_domain UniProtKB/TrEMBL
  FF_domain_sf UniProtKB/TrEMBL
  TCRG1-like UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
  WW_Rsp5_WWP UniProtKB/TrEMBL
KEGG Report rno:307474 UniProtKB/TrEMBL
NCBI Gene 307474 ENTREZGENE
PANTHER PTHR15377 UniProtKB/TrEMBL
Pfam PF00397 UniProtKB/TrEMBL
  PF01846 UniProtKB/TrEMBL
PhenoGen Tcerg1 PhenoGen
PROSITE PS51676 UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART SM00441 UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
Superfamily-SCOP 81698 UniProtKB/TrEMBL
  WW_Rsp5_WWP UniProtKB/TrEMBL
UniProt A0A8I6AM46_RAT UniProtKB/TrEMBL
  A0A8I6GKL3_RAT UniProtKB/TrEMBL
  B5DEZ4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTL0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-20 Tcerg1  transcription elongation regulator 1  Tcerg1  transcription elongation regulator 1 (CA150)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tcerg1  transcription elongation regulator 1 (CA150)   Tcerg1_predicted  transcription elongation regulator 1 (CA150) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tcerg1_predicted  transcription elongation regulator 1 (CA150) (predicted)      Symbol and Name status set to approved 70820 APPROVED