Advanced Search (OLGA)

Gene: Rbm27 (RNA binding motif protein 27) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Rbm27

Name:

RNA binding motif protein 27

RGD ID:

1311966

Description:

Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM27 (RNA binding motif protein 27); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361317; RNA-binding protein 27

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM27 (RNA binding motif protein 27)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	WBP4 (WW domain binding protein 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RBM27 (RNA binding motif protein 27)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbm-26	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	swm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm27	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI		GRCr8
mRatBN7.2	18	34,273,527 - 34,336,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	34,377,713 - 34,438,299 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,096,031 - 35,156,627 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,472,938 - 34,533,528 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,497,009 - 35,534,875 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	35,509,050 - 35,571,571 (+)	NCBI
Celera	18	33,870,445 - 33,933,031 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm27	Rat	familial adenomatous polyposis 1		ISO	RBM27 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial adenomatous polyposis 1	ClinVar	PMID:17963004 more ...
Rbm27	Rat	Hereditary Neoplastic Syndromes		ISO	RBM27 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17963004 more ...
Rbm27	Rat	Neurodevelopmental Disorders		ISO	RBM27 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm27	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of RBM27 mRNA	CTD	PMID:22206623
Rbm27	Rat	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	Rbm27 (Mus musculus)	6480464	2 more ...	CTD	PMID:31388691
Rbm27	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RBM27 mRNA	CTD	PMID:32109520
Rbm27	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of RBM27 mRNA	CTD	PMID:34747641
Rbm27	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of RBM27 mRNA	CTD	PMID:21346803
Rbm27	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2 and 6-dinitrotoluene affects the expression of RBM27 mRNA	CTD	PMID:21346803
Rbm27	Rat	3,4-methylenedioxymethamphetamine	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of RBM27 mRNA	CTD	PMID:20188158 and PMID:26251327
Rbm27	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Rbm27 (Mus musculus)	6480464	bisphenol S results in increased expression of RBM27 mRNA	CTD	PMID:39298647
Rbm27	Rat	aflatoxin M1	decreases expression	ISO	RBM27 (Homo sapiens)	6480464	Aflatoxin M1 results in decreased expression of RBM27 mRNA	CTD	PMID:30928695
Rbm27	Rat	aristolochic acid A	decreases expression	ISO	RBM27 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of RBM27 mRNA	CTD	PMID:33212167
Rbm27	Rat	arsenite(3-)	multiple interactions	ISO	RBM27 (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to RBM27 mRNA]	CTD	PMID:32406909
Rbm27	Rat	benzo[a]pyrene	increases methylation	ISO	Rbm27 (Mus musculus)	6480464	Benzo(a)pyrene results in increased methylation of RBM27 intron	CTD	PMID:27901495
Rbm27	Rat	benzo[a]pyrene diol epoxide I	affects expression	ISO	RBM27 (Homo sapiens)	6480464	7 more ...	CTD	PMID:20382639
Rbm27	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RBM27 mRNA	CTD	PMID:30816183
Rbm27	Rat	bisphenol A	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	bisphenol A results in decreased expression of RBM27 mRNA	CTD	PMID:33221593
Rbm27	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of RBM27 mRNA	CTD	PMID:33453195
Rbm27	Rat	cobalt dichloride	increases expression	EXP		6480464	cobaltous chloride results in increased expression of RBM27 mRNA	CTD	PMID:24386269
Rbm27	Rat	copper(II) sulfate	increases expression	ISO	RBM27 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of RBM27 mRNA	CTD	PMID:19549813
Rbm27	Rat	Dibutyl phosphate	affects expression	ISO	RBM27 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of RBM27 mRNA	CTD	PMID:37042841
Rbm27	Rat	enzyme inhibitor	multiple interactions	ISO	RBM27 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of RBM27 protein	CTD	PMID:23301498
Rbm27	Rat	ethanol	affects splicing	ISO	Rbm27 (Mus musculus)	6480464	Ethanol affects the splicing of RBM27 mRNA	CTD	PMID:30319688
Rbm27	Rat	FR900359	affects phosphorylation	ISO	RBM27 (Homo sapiens)	6480464	FR900359 affects the phosphorylation of RBM27 protein	CTD	PMID:37730182
Rbm27	Rat	furan	increases methylation	EXP		6480464	furan results in increased methylation of RBM27 gene	CTD	PMID:22079235
Rbm27	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of RBM27 mRNA	CTD	PMID:22061828
Rbm27	Rat	glutathione	decreases expression	EXP		6480464	Glutathione deficiency results in decreased expression of RBM27 mRNA	CTD	PMID:20621112
Rbm27	Rat	methotrexate	increases expression	ISO	RBM27 (Homo sapiens)	6480464	Methotrexate results in increased expression of RBM27 mRNA	CTD	PMID:24449571
Rbm27	Rat	methylmercury chloride	decreases expression	ISO	RBM27 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of RBM27 mRNA	CTD	PMID:28001369
Rbm27	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of RBM27 mRNA	CTD	PMID:37995155
Rbm27	Rat	phenobarbital	affects expression	ISO	Rbm27 (Mus musculus)	6480464	Phenobarbital affects the expression of RBM27 mRNA	CTD	PMID:23091169
Rbm27	Rat	serpentine asbestos	decreases methylation	ISO	RBM27 (Homo sapiens)	6480464	Asbestos and Serpentine results in decreased methylation of RBM27 promoter	CTD	PMID:29626692
Rbm27	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of RBM27 mRNA	CTD	PMID:34492290
Rbm27	Rat	titanium dioxide	decreases methylation	ISO	Rbm27 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of RBM27 gene	CTD	PMID:35295148
Rbm27	Rat	titanium dioxide	increases methylation	ISO	Rbm27 (Mus musculus)	6480464	titanium dioxide results in increased methylation of RBM27 gene	CTD	PMID:35295148
Rbm27	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of RBM27 mRNA	CTD	PMID:33387578
Rbm27	Rat	tungsten	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	Tungsten results in decreased expression of RBM27 mRNA	CTD	PMID:30912803
Rbm27	Rat	valproic acid	decreases expression	ISO	RBM27 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of RBM27 mRNA	CTD	PMID:23179753

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm27	Rat	nucleus	is_active_in	IBA	FB:FBgn0002044 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm27	Rat	metal ion binding	enables	IEA	InterPro:IPR000571	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbm27	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbm27	Rat	nucleic acid binding	enables	IEA	InterPro:IPR035979	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbm27	Rat	RNA binding	enables	IEA	UniRule:UR000414619	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Rbm27	Rat	RNA binding	enables	IBA	FB:FBgn0002044 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rbm27	Rat	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbm27	Rat	RNA binding	enables	IEA	InterPro:IPR000504	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbm27	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:22658674	PMID:22681889	PMID:25931508

Rbm27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI		GRCr8
mRatBN7.2	18	34,273,527 - 34,336,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	34,377,713 - 34,438,299 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,096,031 - 35,156,627 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,472,938 - 34,533,528 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,497,009 - 35,534,875 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	35,509,050 - 35,571,571 (+)	NCBI
Celera	18	33,870,445 - 33,933,031 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

RBM27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	146,203,605 - 146,289,223 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	146,203,605 - 146,289,223 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	145,583,168 - 145,668,786 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	145,563,306 - 145,649,220 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	141,663,078 - 141,748,705 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	140,729,821 - 140,815,498 (+)	NCBI		HuRef
CHM1_1	5	145,015,942 - 145,101,491 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	146,739,205 - 146,824,811 (+)	NCBI		T2T-CHM13v2.0

Rbm27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	42,408,386 - 42,474,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	42,408,418 - 42,474,607 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	42,275,205 - 42,341,542 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	42,275,353 - 42,341,542 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	42,435,007 - 42,501,196 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	42,401,326 - 42,467,522 (+)	NCBI		MGSCv36	mm8
Celera	18	43,636,829 - 43,703,015 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	22.45	NCBI

Rbm27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	7,829,022 - 7,901,720 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	7,829,022 - 7,901,617 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBM27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	141,455,854 - 141,544,561 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	139,595,425 - 139,679,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	141,651,921 - 141,736,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	147,666,510 - 147,751,458 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	147,666,510 - 147,751,217 (+)	Ensembl	panpan1.1		panPan2

RBM27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	40,634,447 - 40,709,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	37,678,715 - 37,753,551 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	41,098,063 - 41,173,232 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	41,098,110 - 41,170,894 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	38,164,782 - 38,239,619 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	38,981,171 - 39,055,972 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	39,806,487 - 39,881,360 (+)	NCBI		UU_Cfam_GSD_1.0

Rbm27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	146,827,213 - 146,908,028 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	8,400,445 - 8,482,011 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	8,401,186 - 8,481,986 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	147,569,793 - 147,644,237 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	147,569,762 - 147,644,243 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	154,039,672 - 154,075,885 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	48,779,604 - 48,864,906 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	48,779,623 - 48,861,585 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	28,925,146 - 29,010,987 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	5,691,601 - 5,764,721 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	5,691,699 - 5,766,931 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rbm27
194 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	236
Count of miRNA genes:	98
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000036613, ENSRNOT00000037599, ENSRNOT00000060199
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	59796643	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31271681	60377755	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	59796643	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31359408	59796643	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359530	59796478	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	61698465	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
738005	Anxrr11	Anxiety related response QTL 11	3.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	18	30039813	75039813	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31393320	77209694	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	28964853	73964853	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	29792965	74792965	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	59796643	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	29792965	74792965	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31359408	83218561	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31359408	70263868	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	29792965	74792965	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	29792965	74792965	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat

RH136777

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,333,872 - 34,333,988 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,656,903 - 36,657,018	NCBI	Rnor6.0
Rnor_5.0	18	36,321,643 - 36,321,758	UniSTS	Rnor5.0
RGSC_v3.4	18	35,534,071 - 35,534,186	UniSTS	RGSC3.4
Celera	18	33,930,782 - 33,930,897	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH139795

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,333,872 - 34,334,053 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,656,903 - 36,657,083	NCBI	Rnor6.0
Rnor_5.0	18	36,321,643 - 36,321,823	UniSTS	Rnor5.0
RGSC_v3.4	18	35,534,071 - 35,534,251	UniSTS	RGSC3.4
Celera	18	33,930,782 - 33,930,962	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH141732

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,299,907 - 34,300,087 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,622,943 - 36,623,122	NCBI	Rnor6.0
Rnor_5.0	18	36,287,683 - 36,287,862	UniSTS	Rnor5.0
RGSC_v3.4	18	35,500,111 - 35,500,290	UniSTS	RGSC3.4
Celera	18	33,896,822 - 33,897,001	UniSTS
Cytogenetic Map	18	p11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001108429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001372344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK842888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036613 ⟹ ENSRNOP00000035970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,332,253 (+)	Ensembl
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099893 ⟹ ENSRNOP00000089585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108854 ⟹ ENSRNOP00000079719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,603 - 34,334,126 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119169 ⟹ ENSRNOP00000096280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119222 ⟹ ENSRNOP00000081461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl

RefSeq Acc Id:

NM_001108429 ⟹ NP_001101899

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,606 - 34,585,120 (+)	NCBI
mRatBN7.2	18	34,273,603 - 34,334,127 (+)	NCBI

RefSeq Acc Id:

NM_001372344 ⟹ NP_001359273

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,530 - 34,585,120 (+)	NCBI
mRatBN7.2	18	34,273,527 - 34,334,127 (+)	NCBI

RefSeq Acc Id:

XM_006254678 ⟹ XP_006254740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI
mRatBN7.2	18	34,273,531 - 34,336,124 (+)	NCBI
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI

Sequence:

show sequence

CTCCCGCCCACCTGGGCCTCCGGGCTAGGTTGAGTGGGGCTCTTGGGTTAGTTCCTGTTAGGCCCCGGCCCAGGGAGTAGGTGAAGTCTATAAGATGCCCGGTGGGTCAGGGCACTCGGAGCTGTGAG
GGAACGTGAGGCGGCGTAGAGCGGAGACCCGCGGCGGGCCTTAGGAGGAGCGGCGGCCGAGCCCGCCTTCCCTGCACCATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACT
GGAGCCGATATGTGATGCTGACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAGGACAAACCTGAGAAGGAATTGAAAGCCTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAG
AGACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTTTATACTAAAAACTACCTTCCACCATTGGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTA
TTTCAAGAGCCAGCAGAAGAAGAACGAGATGTTAGAAAGAAGAAATATCCTAGTCCCCAGAAGAGTCGTTCAGAATCTAGTGAGCGAAGGACACGTGAGAAGAAAAGAGAAGATGGCAAGTGGAGAGA
CTATGAGCGGTACTATGAGCGGAACGAGCTGTACCGGGAGAAGTATGACTGGAGAAGGGGCAGGAGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAGCA
AAGACCGGGATCCAAATAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGTGAAAGAAATGACCTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCCAACTCTTCTGAGCAGTATTCC
TCTGGGGCACAGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACACAACCGAGAGCTGGTCCAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCC
ACCACCAAAGAGACGCTGCAGAGATTATGATGAAAGAGGATTTTGTGTACTTGGTGACCTTTGTCAGTTTGATCATGGAAATGATCCTCTAGTTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTT
TCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACCACCTCCCGGAATGTTAATGCCTCCAATGCCAGGCCCAGGCCCAGGCCCTGGTCCTGGCCCTGGCCCTGGTCCCGGCCCAGGCCCAGGCCCTGGC
CATAGTATGAGACTTCCTGTTCCTCAAGGACATGGTCAGCCTCCACCTTCTGTTGTGCTTCCCATACCAAGACCTCCCATTTCACAGTCAAGCTTAATAAACAGCCGTGACCAGCCTGGAACAAGTGC
AGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTCCTCCTTTACCCCAGAACCTCCTTTATACAGTATCAGAAAATACATATGAACCAGATGGTTATAATCCTGAAGCACCTAGTATCACCAGTT
CTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAGCACAGACACAGCGTCCCAACCTGATTGGCCTCACATCTGGAGATATGGATGCAAATCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCA
CCAGTTCCTGTTTCAATTAATAGCAACATCACCAGAGTAGTTCTGGAACCAGAGAGCCGAAAGAGAGCTATTAGTGGTTTGGAAGGGCCCCTTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAA
CAATCAGAGTAAACCAGGCTTCTTAAGGAAGAATCAGTACACAAACACCAAATTAGAAGTGAAAAAAATTCCCCAGGAATTGAACAACATTACCAAGCTCAATGAACACTTCAGCAAATTTGGAACCA
TAGTTAATATCCAGGTTGCTTTTAAAGGTGATCCAGAAGCAGCACTCATCCAGTACCTTACCAATGAGGAGGCCAGGAAAGCCATTTCTAGCACAGAAGCTGTTTTGAACAATCGGTTCATTCGAGTC
CTATGGCACAGAGAGAACAATGAGCAACCAGCACTCCAGTCCTCAGCACAGATTCTCCTGCAGCAGCAACATACCCTGAGTCACCTTTCACAGCAGCACCACAACCTACCACAGCATCTTCATCCGCA
GCAGGTGATGGTAACCCAGTCTTCCCCCTCTTCAGTCCACGGAGGCATCCAAAAGATGATGGGCAAACCACAGACCTCTGGTGCCTATGTTCTTAACAAAGTACCTGTTAAACACCGTCTTGGACATG
CAACTACTAACCAGAGTGACACATCTCACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGACGATTGCCCGGTTTTTTCTACTCCAGGCCATCCAAAAACAATTTACAGTTCCTCGAACTTAAAGGCA
CCTTCAAAACTTTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAGAAGAAACAGGAAGCTATGAAGTTACAGCAAGACATGAGGAAAAAGAGACAAGAAATGTTGGAAAAGCAGATAGA
ATGCCAGAAGATGCTGATCTCTAAACTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAAACATAATGAAGACCTTGAAAGAACTGGGAGAGAAGATCTCACAATTGAAGGATGAATTAAAAA
CATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAGAAGGAATTGTTGGACACAGAACTGGACCTCCACAAGAGGCTCTCCTCAGGAGAAGATACAACAGAGTTACGCAAA
AAGCTCAGTCAGTTACAAGTCGAGGCTGCCAGATTGGGTATTTTACCTGTGGGGCGAGGAAAGACCATGTCCTCTCAAGGCCGAGGAAGAGGCCGGGGTCGAGGAAGAGGGAGGGGCTCACTGAATCA
CATGGTGGTGGACCACCGCCCCAAAGCACTCCCAGCTGGAGGGTTCATTGAGGAGGAAAAGGAGGAGTTGCTCCAGCATTTCTCAGCTACAAACCAATCGTCTAAATTCAAAGACCGTCGGCTACAGA
TATCGTGGCACAAGCCCAAGGTACCGTCTATATCTACTGAGACTGAGGAAGAAGAAGTCAAAGAAGAGGTAAAGTCAGCTATTAGAGAAACAGAAACCTCAGATTTGTTTTTGCATGATGATGATGAT
GAAGATGAAGATGAATATGAGTCTCGTTCGTGGCGAAGATGAAATTTGATGCGAGTTGTGTAATTTTTAGAAATATTGTTTAGAAGAACAACTTTTTAGAATTATTTAAAGAAGTCAATGAGCCAAAA
AAAATTTTTTTTCTCTTCAACACAGTAGGTTTAAGGACAGCAAGTTGCTATTCAAACACATCTCATAATTGTCTGTGATATCAAATCACCAGAGGCCGTGACTTTACACAGTTGTGAAGACCCACAGG
AGTGACCGGATTCTCTAGAACCTTACCCTCCACACCATCTGCTTCTGCTCTTGGTGCTGGATTCAGTGTAAAGACAGGGTGTTCAGAAATTTTATTTTGGATTATAAATCTGCTGATAAAAATTTCAT
TAAATGTCAAAATCGCCTGGAATCTCTTAACTCTTAGCTATTATGGATGGGTCGTCAGACAGTTGGAGATGCTTGTAATTTAAATACCTTTTCCTTTCAAGAATGATCTTGGAAGAAAAGTAAATTTA
ATTTTTTTTTTTTAAACAATGGAAGAACCCACTTTATAAGTCAGTCTTTTTCAGAGTTTATGTGTGGCAAAGCTGCAGCAAAACCACCGTCTCTGTTCCCAGAAGCTGCAGAGCACAAAGCTGGCTCT
GCTGCGTCCTCTCCTCGCTCACACCTGCCCTGGGGCTTCTGTTTTGAAATGTGCTGGGCATTGCCTCAGTTGTCCTCCTACCCCTTTTAAATAAACCTCATTTTGCCTTTTGCCCTTTTACTTATTCC
CTTGTATCTTTTTCACTCCTTTTGATTAATAAGCCTGACTTTTTGAAATGAGTGATTCAGTTGGGCAATCAAGAATCAGTCATCAGTAAAAGGTTTAAACCAGCACCTTTGTAAAGAAGTGATGCTTT
GATGAAAATAAAGGCGGAATTTTAGGGCACAGAGATACTGGCTTCCCTCCCCTTTAAAGCTTCAGCGTAGTTACAGTTACCCCAAAGGCTGACGGTCTCTTCTGCATTGTAATGATGATGGTGAGGTG
CTGAGGTGGGGATTAGGAGTCTGGATATGCTAGTAATAAATGAGATTCTAACTTGA

hide sequence

RefSeq Acc Id:

XM_006254680 ⟹ XP_006254742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI
mRatBN7.2	18	34,273,531 - 34,336,124 (+)	NCBI
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI

Sequence:

show sequence

CTCCCGCCCACCTGGGCCTCCGGGCTAGGTTGAGTGGGGCTCTTGGGTTAGTTCCTGTTAGGCC
CCGGCCCAGGGAGTAGGTGAAGTCTATAAGATGCCCGGTGGGTCAGGGCACTCGGAGCTGTGAGGGAACGTGAGGCGGCGTAGAGCGGAGACCCGCGGCGGGCCTTAGGAGGAGCGGCGGCCGAGCCC
GCCTTCCCTGCACCATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACTGGAGCCGATATGTGATGCTGACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAG
GACAAACCTGAGAAGGAATTGAAAGCCTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAGAGACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTTTATACTAAAAACTACCTTCCACCATT
GGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTATTTCAAGAGCCAGCAGAAGAAGAACGAGATGTTAGAAAGAAGAAATATCCTAGTCCCCAGAAGA
GTCGTTCAGAATCTAGTGAGCGAAGGACACGTGAGAAGAAAAGAGAAGATGGCAAGTGGAGAGACTATGAGCGGTACTATGAGCGGAACGAGCTGTACCGGGAGAAGTATGACTGGAGAAGGGGCAGG
AGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAGCAAAGACCGGGATCCAAATAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGTGAAAGAAA
TGACCTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCCAACTCTTCTGAGCAGTATTCCTCTGGGGCACAGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACA
CAACCGAGAGCTGGTCCAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCCACCACCAAAGAGACGCTGCAGAGATTATGATGGACCTCCCATTTCACAGTCAAGCTTAATAAAC
AGCCGTGACCAGCCTGGAACAAGTGCAGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTCCTCCTTTACCCCAGAACCTCCTTTATACAGTATCAGAAAGACAGCCCATGTATTCTCGTGAACA
TGGTGCTGCTGCATCTGAGCGACTTCAGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTGGTGCCACCTCGAAACCTCATGGGATCCTCCATTGGGTATCATACCTCAGTCTCCAGCCCCACCC
CTCTGGTCCCAGATACATATGAACCAGATGGTTATAATCCTGAAGCACCTAGTATCACCAGTTCTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAGCACAGACACAGCGTCCCAACCTGATTGGC
CTCACATCTGGAGATATGGATGCAAATCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCACCAGTTCCTGTTTCAATTAATAGCAACATCACCAGAGTAGTTCTGGAACCAGAGAGCCGAAAGAG
AGCTATTAGTGGTTTGGAAGGGCCCCTTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAACAATCAGAGTAAACCAGGCTTCTTAAGGAAGAATCAGTACACAAACACCAAATTAGAAGTGAAAA
AAATTCCCCAGGAATTGAACAACATTACCAAGCTCAATGAACACTTCAGCAAATTTGGAACCATAGTTAATATCCAGGTTGCTTTTAAAGGTGATCCAGAAGCAGCACTCATCCAGTACCTTACCAAT
GAGGAGGCCAGGAAAGCCATTTCTAGCACAGAAGCTGTTTTGAACAATCGGTTCATTCGAGTCCTATGGCACAGAGAGAACAATGAGCAACCAGCACTCCAGTCCTCAGCACAGATTCTCCTGCAGCA
GCAACATACCCTGAGTCACCTTTCACAGCAGCACCACAACCTACCACAGCATCTTCATCCGCAGCAGGTGATGGTAACCCAGTCTTCCCCCTCTTCAGTCCACGGAGGCATCCAAAAGATGATGGGCA
AACCACAGACCTCTGGTGCCTATGTTCTTAACAAAGTACCTGTTAAACACCGTCTTGGACATGCAACTACTAACCAGAGTGACACATCTCACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGACGAT
TGCCCGGTTTTTTCTACTCCAGGCCATCCAAAAACAATTTACAGTTCCTCGAACTTAAAGGCACCTTCAAAACTTTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAGAAGAAACAGGA
AGCTATGAAGTTACAGCAAGACATGAGGAAAAAGAGACAAGAAATGTTGGAAAAGCAGATAGAATGCCAGAAGATGCTGATCTCTAAACTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAA
ACATAATGAAGACCTTGAAAGAACTGGGAGAGAAGATCTCACAATTGAAGGATGAATTAAAAACATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAGAAGGAATTGTTG
GACACAGAACTGGACCTCCACAAGAGGCTCTCCTCAGGAGAAGATACAACAGAGTTACGCAAAAAGCTCAGTCAGTTACAAGTCGAGGCTGCCAGATTGGGTATTTTACCTGTGGGGCGAGGAAAGAC
CATGTCCTCTCAAGGCCGAGGAAGAGGCCGGGGTCGAGGAAGAGGGAGGGGCTCACTGAATCACATGGTGGTGGACCACCGCCCCAAAGCACTCCCAGCTGGAGGGTTCATTGAGGAGGAAAAGGAGG
AGTTGCTCCAGCATTTCTCAGCTACAAACCAATCGTCTAAATTCAAAGACCGTCGGCTACAGATATCGTGGCACAAGCCCAAGGTACCGTCTATATCTACTGAGACTGAGGAAGAAGAAGTCAAAGAA
GAGGTAAAGTCAGCTATTAGAGAAACAGAAACCTCAGATTTGTTTTTGCATGATGATGATGATGAAGATGAAGATGAATATGAGTCTCGTTCGTGGCGAAGATGAAATTTGATGCGAGTTGTGTAATT
TTTAGAAATATTGTTTAGAAGAACAACTTTTTAGAATTATTTAAAGAAGTCAATGAGCCAAAAAAAATTTTTTTTCTCTTCAACACAGTAGGTTTAAGGACAGCAAGTTGCTATTCAAACACATCTCA
TAATTGTCTGTGATATCAAATCACCAGAGGCCGTGACTTTACACAGTTGTGAAGACCCACAGGAGTGACCGGATTCTCTAGAACCTTACCCTCCACACCATCTGCTTCTGCTCTTGGTGCTGGATTCA
GTGTAAAGACAGGGTGTTCAGAAATTTTATTTTGGATTATAAATCTGCTGATAAAAATTTCATTAAATGTCAAAATCGCCTGGAATCTCTTAACTCTTAGCTATTATGGATGGGTCGTCAGACAGTTG
GAGATGCTTGTAATTTAAATACCTTTTCCTTTCAAGAATGATCTTGGAAGAAAAGTAAATTTAATTTTTTTTTTTTAAACAATGGAAGAACCCACTTTATAAGTCAGTCTTTTTCAGAGTTTATGTGT
GGCAAAGCTGCAGCAAAACCACCGTCTCTGTTCCCAGAAGCTGCAGAGCACAAAGCTGGCTCTGCTGCGTCCTCTCCTCGCTCACACCTGCCCTGGGGCTTCTGTTTTGAAATGTGCTGGGCATTGCC
TCAGTTGTCCTCCTACCCCTTTTAAATAAACCTCATTTTGCCTTTTGCCCTTTTACTTATTCCCTTGTATCTTTTTCACTCCTTTTGATTAATAAGCCTGACTTTTTGAAATGAGTGATTCAGTTGGG
CAATCAAGAATCAGTCATCAGTAAAAGGTTTAAACCAGCACCTTTGTAAAGAAGTGATGCTTTGATGAAAATAAAGGCGGAATTTTAGGGCACAGAGATACTGGCTTCCCTCCCCTTTAAAGCTTCAG
CGTAGTTACAGTTACCCCAAAGGCTGACGGTCTCTTCTGCATTGTAATGATGATGGTGAGGTGCTGAGGTGGGGATTAGGAGTCTGGATATGCTAGTAATAAATGAGATTCTAACTTGA

hide sequence

RefSeq Acc Id:

XM_008772179 ⟹ XP_008770401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI
mRatBN7.2	18	34,273,531 - 34,336,124 (+)	NCBI
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI

Sequence:

show sequence

CTCCCGCCCACCTGGGCCTCCGGGCTAGGTTGAGTGGGGCTCTTGGGTTAGTTCCTGTTAGGCCCCGGCCCAGGGAGTAGGTGAAGTCTATAAGATGCCCGGTGGGTCAGGGCACTCGGAGCTGTGAG
GGAACGTGAGGCGGCGTAGAGCGGAGACCCGCGGCGGGCCTTAGGAGGAGCGGCGGCCGAGCCCGCCTTCCCTGCACCATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACT
GGAGCCGATATGTGATGCTGACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAGGACAAACCTGAGAAGGAATTGAAAGCCTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAG
AGACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTTTATACTAAAAACTACCTTCCACCATTGGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTA
TTTCAAGAGCCAGCAGAAGAAGAACGAGATGTTAGAAAGAAGAAATATCCTAGTCCCCAGAAGAGTCGTTCAGAATCTAGTGAGCGAAGGACACGTGAGAAGAAAAGAGAAGATGGCAAGTGGAGAGA
CTATGAGCGGTACTATGAGCGGAACGAGCTGTACCGGGAGAAGTATGACTGGAGAAGGGGCAGGAGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAGCA
AAGACCGGGATCCAAATAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGTGAAAGAAATGACCTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCCAACTCTTCTGAGCAGTATTCC
TCTGGGGCACAGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACACAACCGAGAGCTGGTCCAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCC
ACCACCAAAGAGACGCTGCAGAGATTATGATGAAAGAGGATTTTGTGTACTTGGTGACCTTTGTCAGTTTGATCATGGAAATGATCCTCTAGTTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTT
TCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACCACCTCCCGGAATGTTAATGCCTCCAATGCCAGGCCCAGGCCCAGGCCCTGGTCCTGGCCCTGGCCCTGGTCCCGGCCCAGGCCCAGGCCCTGGC
CATAGTATGAGACTTCCTGTTCCTCAAGGACATGGTCAGCCTCCACCTTCTGTTGTGCTTCCCATACCAAGACCTCCCATTTCACAGTCAAGCTTAATAAACAGCCGTGACCAGCCTGGAACAAGTGC
AGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTCCTCCTTTACCCCAGAACCTCCTTTATACAGTATCAGAAAGACAGCCCATGTATTCTCGTGAACATGGTGCTGCTGCATCTGAGCGACTTC
AGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTGGTGCCACCTCGAAACCTCATGGGATCCTCCATTGGGTATCATACCTCAGTCTCCAGCCCCACCCCTCTGGTCCCAGATACATATGAACCA
GATGGTTATAATCCTGAAGCACCTAGTATCACCAGTTCTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAGCACAGACACAGCGTCCCAACCTGATTGGCCTCACATCTGGAGATATGGATGCAAA
TCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCACCAGTTCCTGTTTCAATTAATAGCAACATCACCAGAGTAGTTCTGGAACCAGAGAGCCGAAAGAGAGCTATTAGTGGTTTGGAAGGGCCCC
TTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAACAATCAGAGTAAACCAGGCTTCTTAAGGAAGAATCAGTACACAAACACCAAATTAGAAGTGAAAAAAATTCCCCAGGAATTGAACAACATT
ACCAAGCTCAATGAACACTTCAGCAAATTTGGAACCATAGTTAATATCCAGGTTGCTTTTAAAGGTGATCCAGAAGCAGCACTCATCCAGTACCTTACCAATGAGGAGGCCAGGAAAGCCATTTCTAG
CACAGAAGCTGTTTTGAACAATCGGTTCATTCGAGTCCTATGGCACAGAGAGAACAATGAGCAACCAGCACTCCAGTCCTCAGCACAGATTCTCCTGCAGCAGCAACATACCCTGAGTCACCTTTCAC
AGCAGCACCACAACCTACCACAGCATCTTCATCCGCAGCAGGTGATGGTAACCCAGTCTTCCCCCTCTTCAGTCCACGGAGGCATCCAAAAGATGATGGGCAAACCACAGACCTCTGGTGCCTATGTT
CTTAACAAAGTACCTGTTAAACACCGTCTTGGACATGCAACTACTAACCAGAGTGACACATCTCACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGACGATTGCCCGGTTTTTTCTACTCCAGGCCA
TCCAAAAACAATTTACAGTTCCTCGAACTTAAAGGCACCTTCAAAACTTTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAGAAGAAACAGGAAGCTATGAAGTTACAGCAAGACATGA
GGAAAAAGAGACAAGAAATGTTGGAAAAGCAGATAGAATGCCAGAAGATGCTGATCTCTAAACTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAAACATAATGAAGACCTTGAAAGAACTG
GGAGAGAAGATCTCACAATTGAAGGATGAATTAAAAACATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAGAAGGAATTGTTGGACACAGAACTGGACCTCCACAAGAG
GCTCTCCTCAGGAGAAGATACAACAGAGTTACGCAAAAAGCTCAGTCAGTTACAAGTCGAGGCTGCCAGATTGGGTATTTTACCTGTGGGGCGAGGAAAGACCATGTCCTCTCAAGGCCGAGGAAGAG
GCCGGGGTCGAGGAAGAGGGAGGGGCTCACTGAATCACATGGTGGTGGACCACCGCCCCAAAGCACTCCCAGCTGGAGGGTTCATTGAGGAGGAAAAGGAGGAGTTGCTCCAGCATTTCTCAGCTACA
AACCAATCGTCTAAATTCAAAGACCGTCGGCTACAGATATCGTGGCACAAGCCCAAGGTACCGTCTATATCTACTGAGACTGAGGAAGAAGAAGTCAAAGAAGAGGTAAAGTCAGCTATTAGAGAAAC
AGAAACCTCAGATTTGTTTTTGCATGATGATGATGATGAAGATGAAGATGAATATGAGTCTCGTTCGTGGCGAAGATGAAATTTGATGCGAGTTGTGTAATTTTTAGAAATATTGTTTAGAAGAACAA
CTTTTTAGAATTATTTAAAGAAGTCAATGAGCCAAAAAAAATTTTTTTTCTCTTCAACACAGTAGGTTTAAGGACAGCAAGTTGCTATTCAAACACATCTCATAATTGTCTGTGATATCAAATCACCA
GAGGCCGTGACTTTACACAGTTGTGAAGACCCACAGGAGTGACCGGATTCTCTAGAACCTTACCCTCCACACCATCTGCTTCTGCTCTTGGTGCTGGATTCAGTGTAAAGACAGGGTGTTCAGAAATT
TTATTTTGGATTATAAATCTGCTGATAAAAATTTCATTAAATGTCAAAATCGCCTGGAATCTCTTAACTCTTAGCTATTATGGATGGGTCGTCAGACAGTTGGAGATGCTTGTAATTTAAATACCTTT
TCCTTTCAAGAATGATCTTGGAAGAAAAGTAAATTTAATTTTTTTTTTTTAAACAATGGAAGAACCCACTTTATAAGTCAGTCTTTTTCAGAGTTTATGTGTGGCAAAGCTGCAGCAAAACCACCGTC
TCTGTTCCCAGAAGCTGCAGAGCACAAAGCTGGCTCTGCTGCGTCCTCTCCTCGCTCACACCTGCCCTGGGGCTTCTGTTTTGAAATGTGCTGGGCATTGCCTCAGTTGTCCTCCTACCCCTTTTAAA
TAAACCTCATTTTGCCTTTTGCCCTTTTACTTATTCCCTTGTATCTTTTTCACTCCTTTTGATTAATAAGCCTGACTTTTTGAAATGAGTGATTCAGTTGGGCAATCAAGAATCAGTCATCAGTAAAA
GGTTTAAACCAGCACCTTTGTAAAGAAGTGATGCTTTGATGAAAATAAAGGCGGAATTTTAGGGCACAGAGATACTGGCTTCCCTCCCCTTTAAAGCTTCAGCGTAGTTACAGTTACCCCAAAGGCTG
ACGGTCTCTTCTGCATTGTAATGATGATGGTGAGGTGCTGAGGTGGGGATTAGGAGTCTGGATATGCTAGTAATAAATGAGATTCTAACTTGA

hide sequence

RefSeq Acc Id:

XM_063277467 ⟹ XP_063133537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI

RefSeq Acc Id:

XM_063277468 ⟹ XP_063133538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI

RefSeq Acc Id:

XM_063277469 ⟹ XP_063133539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI


Protein RefSeqs	NP_001101899	(Get FASTA)	NCBI Sequence Viewer
	NP_001359273	(Get FASTA)	NCBI Sequence Viewer
	XP_006254740	(Get FASTA)	NCBI Sequence Viewer
	XP_006254742	(Get FASTA)	NCBI Sequence Viewer
	XP_008770401	(Get FASTA)	NCBI Sequence Viewer
	XP_063133537	(Get FASTA)	NCBI Sequence Viewer
	XP_063133538	(Get FASTA)	NCBI Sequence Viewer
	XP_063133539	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76482	(Get FASTA)	NCBI Sequence Viewer
	EDL76483	(Get FASTA)	NCBI Sequence Viewer
	EDL76484	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035970.6
	ENSRNOP00000079719
	ENSRNOP00000079719.1
	ENSRNOP00000081461.1
	ENSRNOP00000089585.1
	ENSRNOP00000096280
	ENSRNOP00000096280.1
	ENSRNOP00000098847

RefSeq Acc Id:	XP_006254740 ⟸ XM_006254678
- Peptide Label:	isoform X2
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSES SERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW SNYYNNHSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPP ISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSENTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAISG LEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTL SHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHATTNQSDTSHLLNQTGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKL QQDMRKKRQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQ GRGRGRGRGRGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQHFSATNQSSKFKDRRLQISWHKPKVPSISTETEEEEVKEEVKSAIRETETSDLFLHDDDDEDEDEYESRSWRR hide sequence

RefSeq Acc Id:	XP_006254742 ⟸ XM_006254680
- Peptide Label:	isoform X3
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSES SERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW SNYYNNHSSSNSFGRNPPPKRRCRDYDGPPISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPD TYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQE LNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTS GAYVLNKVPVKHRLGHATTNQSDTSHLLNQTGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKT LKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGRGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQH FSATNQSSKFKDRRLQISWHKPKVPSISTETEEEEVKEEVKSAIRETETSDLFLHDDDDEDEDEYESRSWRR hide sequence

RefSeq Acc Id:	XP_008770401 ⟸ XM_008772179
- Peptide Label:	isoform X1
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSES SERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW SNYYNNHSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPP ISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQ TQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEA ALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHATTNQSDTSHLLNQ TGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTK TEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGRGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQHFSATNQSSKFKDRRLQISWHKPKVPSISTE TEEEEVKEEVKSAIRETETSDLFLHDDDDEDEDEYESRSWRR hide sequence

Ensembl Acc Id:

ENSRNOP00000035970 ⟸ ENSRNOT00000036613

RefSeq Acc Id:	NP_001359273 ⟸ NM_001372344
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I5ZS16 (UniProtKB/TrEMBL), F1M1R4 (UniProtKB/TrEMBL)

Protein Domains

C3H1-type RRM

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M1R4-F1-model_v2	AlphaFold	F1M1R4	1-1060	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700758

Promoter ID:

EPDNEW_R11274

Type:

initiation region

Name:

Rbm27_1

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	36,596,617 - 36,596,677	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-7701	BioCyc
Ensembl Genes	ENSRNOG00000027250	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036613.8	UniProtKB/TrEMBL
	ENSRNOT00000099893.1	UniProtKB/TrEMBL
	ENSRNOT00000108854	ENTREZGENE
	ENSRNOT00000108854.1	UniProtKB/TrEMBL
	ENSRNOT00000119169	ENTREZGENE
	ENSRNOT00000119169.1	UniProtKB/TrEMBL
	ENSRNOT00000119222.1	UniProtKB/TrEMBL
	ENSRNOT00000150349	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	PWI domain	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	PWI_dom	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM26/27	UniProtKB/TrEMBL
	RBM27_RRM	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
NCBI Gene	361317	ENTREZGENE
PANTHER	PTHR14398	UniProtKB/TrEMBL
	RNA-BINDING PROTEIN 27	UniProtKB/TrEMBL
Pfam	PWI	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Rbm27	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027250	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5ZN77	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZS16	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AC35_RAT	UniProtKB/TrEMBL
	A0A8I6AS62	ENTREZGENE, UniProtKB/TrEMBL
	F1M1R4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rbm27	RNA binding motif protein 27	Rbm27_predicted	RNA binding motif protein 27 (predicted)	'predicted' is removed	2292626	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar