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Gene: Rbm27 (RNA binding motif protein 27) Rattus norvegicus

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Symbol:

Rbm27

Name:

RNA binding motif protein 27

RGD ID:

1311966

Description:

Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM27 (RNA binding motif protein 27); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361317; RNA-binding protein 27

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM27 (RNA binding motif protein 27)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm27 (RNA binding motif protein 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	WBP4 (WW domain binding protein 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RBM27 (RNA binding motif protein 27)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbm-26	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	swm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm27	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI		GRCr8
mRatBN7.2	18	34,273,527 - 34,336,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	34,377,713 - 34,438,299 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,096,031 - 35,156,627 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,472,938 - 34,533,528 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,497,009 - 35,534,875 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	35,509,050 - 35,571,571 (+)	NCBI
Celera	18	33,870,445 - 33,933,031 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

glutathione (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

serpentine asbestos (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IBA)

Molecular Function

RNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:22658674	PMID:22681889	PMID:25931508

Genomics

Comparative Map Data

Rbm27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI		GRCr8
mRatBN7.2	18	34,273,527 - 34,336,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	34,377,713 - 34,438,299 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,096,031 - 35,156,627 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,472,938 - 34,533,528 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,497,009 - 35,534,875 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	35,509,050 - 35,571,571 (+)	NCBI
Celera	18	33,870,445 - 33,933,031 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

RBM27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	146,203,605 - 146,289,223 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	146,203,605 - 146,289,223 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	145,583,168 - 145,668,786 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	145,563,306 - 145,649,220 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	141,663,078 - 141,748,705 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	140,729,821 - 140,815,498 (+)	NCBI		HuRef
CHM1_1	5	145,015,942 - 145,101,491 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	146,739,205 - 146,824,811 (+)	NCBI		T2T-CHM13v2.0

Rbm27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	42,408,386 - 42,474,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	42,408,418 - 42,474,607 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	42,275,205 - 42,341,542 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	42,275,353 - 42,341,542 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	42,435,007 - 42,501,196 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	42,401,326 - 42,467,522 (+)	NCBI		MGSCv36	mm8
Celera	18	43,636,829 - 43,703,015 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	22.45	NCBI

Rbm27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	7,829,022 - 7,901,720 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	7,829,022 - 7,901,617 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBM27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	141,455,854 - 141,544,561 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	139,595,425 - 139,679,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	141,651,921 - 141,736,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	147,666,510 - 147,751,458 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	147,666,510 - 147,751,217 (+)	Ensembl	panpan1.1		panPan2

RBM27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	40,634,447 - 40,709,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	37,678,715 - 37,753,551 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	41,098,063 - 41,173,232 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	41,098,110 - 41,170,894 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	38,164,782 - 38,239,619 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	38,981,171 - 39,055,972 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	39,806,487 - 39,881,360 (+)	NCBI		UU_Cfam_GSD_1.0

Rbm27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	146,827,213 - 146,908,028 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	8,400,445 - 8,482,011 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	8,401,186 - 8,481,986 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	147,569,793 - 147,644,237 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	147,569,762 - 147,644,243 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	154,039,672 - 154,075,885 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	48,779,604 - 48,864,906 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	48,779,623 - 48,861,585 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	28,925,146 - 29,010,987 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	5,691,601 - 5,764,721 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	5,691,699 - 5,766,931 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	236
Count of miRNA genes:	98
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000036613, ENSRNOT00000037599, ENSRNOT00000060199
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26822186	71822186	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26822186	71822186	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26822186	71822186	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	63968306	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26822186	71822186	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26822186	71822186	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26822186	71822186	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	31990891	76990891	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31610505	85493247	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	33379158	78379158	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	31990891	76990891	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	33379158	78379158	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	33379158	78379158	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	33379158	78379158	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26822186	71822186	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31522783	76522783	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	33379158	78379158	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	33379158	78379158	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	33379158	78379158	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31610505	77371277	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	31990891	76990891	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	26415821	71415821	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31644508	79484311	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	31990891	76990891	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31610505	72538878	Rat

Markers in Region

RH136777

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,333,872 - 34,333,988 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,656,903 - 36,657,018	NCBI	Rnor6.0
Rnor_5.0	18	36,321,643 - 36,321,758	UniSTS	Rnor5.0
RGSC_v3.4	18	35,534,071 - 35,534,186	UniSTS	RGSC3.4
Celera	18	33,930,782 - 33,930,897	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH139795

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,333,872 - 34,334,053 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,656,903 - 36,657,083	NCBI	Rnor6.0
Rnor_5.0	18	36,321,643 - 36,321,823	UniSTS	Rnor5.0
RGSC_v3.4	18	35,534,071 - 35,534,251	UniSTS	RGSC3.4
Celera	18	33,930,782 - 33,930,962	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH141732

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,299,907 - 34,300,087 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,622,943 - 36,623,122	NCBI	Rnor6.0
Rnor_5.0	18	36,287,683 - 36,287,862	UniSTS	Rnor5.0
RGSC_v3.4	18	35,500,111 - 35,500,290	UniSTS	RGSC3.4
Celera	18	33,896,822 - 33,897,001	UniSTS
Cytogenetic Map	18	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001372344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK842888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036613 ⟹ ENSRNOP00000035970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,332,253 (+)	Ensembl
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099893 ⟹ ENSRNOP00000089585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108854 ⟹ ENSRNOP00000079719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,603 - 34,334,126 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119169 ⟹ ENSRNOP00000096280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119222 ⟹ ENSRNOP00000081461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl

RefSeq Acc Id:

NM_001108429 ⟹ NP_001101899

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,606 - 34,585,120 (+)	NCBI
mRatBN7.2	18	34,273,603 - 34,334,127 (+)	NCBI

RefSeq Acc Id:

NM_001372344 ⟹ NP_001359273

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,530 - 34,585,120 (+)	NCBI
mRatBN7.2	18	34,273,527 - 34,334,127 (+)	NCBI

RefSeq Acc Id:

XM_006254678 ⟹ XP_006254740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI
mRatBN7.2	18	34,273,531 - 34,336,124 (+)	NCBI
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI

Sequence:

show sequence

CTCCCGCCCACCTGGGCCTCCGGGCTAGGTTGAGTGGGGCTCTTGGGTTAGTTCCTGTTAGGCC
CCGGCCCAGGGAGTAGGTGAAGTCTATAAGATGCCCGGTGGGTCAGGGCACTCGGAGCTGTGAG
GGAACGTGAGGCGGCGTAGAGCGGAGACCCGCGGCGGGCCTTAGGAGGAGCGGCGGCCGAGCCC
GCCTTCCCTGCACCATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACT
GGAGCCGATATGTGATGCTGACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAG
GACAAACCTGAGAAGGAATTGAAAGCCTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAG
AGACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTTTATACTAAAAACTACCTTCCACCATT
GGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTA
TTTCAAGAGCCAGCAGAAGAAGAACGAGATGTTAGAAAGAAGAAATATCCTAGTCCCCAGAAGA
GTCGTTCAGAATCTAGTGAGCGAAGGACACGTGAGAAGAAAAGAGAAGATGGCAAGTGGAGAGA
CTATGAGCGGTACTATGAGCGGAACGAGCTGTACCGGGAGAAGTATGACTGGAGAAGGGGCAGG
AGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAGCA
AAGACCGGGATCCAAATAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGTGAAAGAAA
TGACCTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCCAACTCTTCTGAGCAGTATTCC
TCTGGGGCACAGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACA
CAACCGAGAGCTGGTCCAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCC
ACCACCAAAGAGACGCTGCAGAGATTATGATGAAAGAGGATTTTGTGTACTTGGTGACCTTTGT
CAGTTTGATCATGGAAATGATCCTCTAGTTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTT
TCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACCACCTCCCGGAATGTTAATGCCTCCAATGCC
AGGCCCAGGCCCAGGCCCTGGTCCTGGCCCTGGCCCTGGTCCCGGCCCAGGCCCAGGCCCTGGC
CATAGTATGAGACTTCCTGTTCCTCAAGGACATGGTCAGCCTCCACCTTCTGTTGTGCTTCCCA
TACCAAGACCTCCCATTTCACAGTCAAGCTTAATAAACAGCCGTGACCAGCCTGGAACAAGTGC
AGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTCCTCCTTTACCCCAGAACCTCCTTTAT
ACAGTATCAGAAAATACATATGAACCAGATGGTTATAATCCTGAAGCACCTAGTATCACCAGTT
CTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAGCACAGACACAGCGTCCCAACCTGATTGG
CCTCACATCTGGAGATATGGATGCAAATCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCA
CCAGTTCCTGTTTCAATTAATAGCAACATCACCAGAGTAGTTCTGGAACCAGAGAGCCGAAAGA
GAGCTATTAGTGGTTTGGAAGGGCCCCTTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAA
CAATCAGAGTAAACCAGGCTTCTTAAGGAAGAATCAGTACACAAACACCAAATTAGAAGTGAAA
AAAATTCCCCAGGAATTGAACAACATTACCAAGCTCAATGAACACTTCAGCAAATTTGGAACCA
TAGTTAATATCCAGGTTGCTTTTAAAGGTGATCCAGAAGCAGCACTCATCCAGTACCTTACCAA
TGAGGAGGCCAGGAAAGCCATTTCTAGCACAGAAGCTGTTTTGAACAATCGGTTCATTCGAGTC
CTATGGCACAGAGAGAACAATGAGCAACCAGCACTCCAGTCCTCAGCACAGATTCTCCTGCAGC
AGCAACATACCCTGAGTCACCTTTCACAGCAGCACCACAACCTACCACAGCATCTTCATCCGCA
GCAGGTGATGGTAACCCAGTCTTCCCCCTCTTCAGTCCACGGAGGCATCCAAAAGATGATGGGC
AAACCACAGACCTCTGGTGCCTATGTTCTTAACAAAGTACCTGTTAAACACCGTCTTGGACATG
CAACTACTAACCAGAGTGACACATCTCACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGACGA
TTGCCCGGTTTTTTCTACTCCAGGCCATCCAAAAACAATTTACAGTTCCTCGAACTTAAAGGCA
CCTTCAAAACTTTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAGAAGAAACAGG
AAGCTATGAAGTTACAGCAAGACATGAGGAAAAAGAGACAAGAAATGTTGGAAAAGCAGATAGA
ATGCCAGAAGATGCTGATCTCTAAACTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCA
AACATAATGAAGACCTTGAAAGAACTGGGAGAGAAGATCTCACAATTGAAGGATGAATTAAAAA
CATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAGAAGGAATTGTT
GGACACAGAACTGGACCTCCACAAGAGGCTCTCCTCAGGAGAAGATACAACAGAGTTACGCAAA
AAGCTCAGTCAGTTACAAGTCGAGGCTGCCAGATTGGGTATTTTACCTGTGGGGCGAGGAAAGA
CCATGTCCTCTCAAGGCCGAGGAAGAGGCCGGGGTCGAGGAAGAGGGAGGGGCTCACTGAATCA
CATGGTGGTGGACCACCGCCCCAAAGCACTCCCAGCTGGAGGGTTCATTGAGGAGGAAAAGGAG
GAGTTGCTCCAGCATTTCTCAGCTACAAACCAATCGTCTAAATTCAAAGACCGTCGGCTACAGA
TATCGTGGCACAAGCCCAAGGTACCGTCTATATCTACTGAGACTGAGGAAGAAGAAGTCAAAGA
AGAGGTAAAGTCAGCTATTAGAGAAACAGAAACCTCAGATTTGTTTTTGCATGATGATGATGAT
GAAGATGAAGATGAATATGAGTCTCGTTCGTGGCGAAGATGAAATTTGATGCGAGTTGTGTAAT
TTTTAGAAATATTGTTTAGAAGAACAACTTTTTAGAATTATTTAAAGAAGTCAATGAGCCAAAA
AAAATTTTTTTTCTCTTCAACACAGTAGGTTTAAGGACAGCAAGTTGCTATTCAAACACATCTC
ATAATTGTCTGTGATATCAAATCACCAGAGGCCGTGACTTTACACAGTTGTGAAGACCCACAGG
AGTGACCGGATTCTCTAGAACCTTACCCTCCACACCATCTGCTTCTGCTCTTGGTGCTGGATTC
AGTGTAAAGACAGGGTGTTCAGAAATTTTATTTTGGATTATAAATCTGCTGATAAAAATTTCAT
TAAATGTCAAAATCGCCTGGAATCTCTTAACTCTTAGCTATTATGGATGGGTCGTCAGACAGTT
GGAGATGCTTGTAATTTAAATACCTTTTCCTTTCAAGAATGATCTTGGAAGAAAAGTAAATTTA
ATTTTTTTTTTTTAAACAATGGAAGAACCCACTTTATAAGTCAGTCTTTTTCAGAGTTTATGTG
TGGCAAAGCTGCAGCAAAACCACCGTCTCTGTTCCCAGAAGCTGCAGAGCACAAAGCTGGCTCT
GCTGCGTCCTCTCCTCGCTCACACCTGCCCTGGGGCTTCTGTTTTGAAATGTGCTGGGCATTGC
CTCAGTTGTCCTCCTACCCCTTTTAAATAAACCTCATTTTGCCTTTTGCCCTTTTACTTATTCC
CTTGTATCTTTTTCACTCCTTTTGATTAATAAGCCTGACTTTTTGAAATGAGTGATTCAGTTGG
GCAATCAAGAATCAGTCATCAGTAAAAGGTTTAAACCAGCACCTTTGTAAAGAAGTGATGCTTT
GATGAAAATAAAGGCGGAATTTTAGGGCACAGAGATACTGGCTTCCCTCCCCTTTAAAGCTTCA
GCGTAGTTACAGTTACCCCAAAGGCTGACGGTCTCTTCTGCATTGTAATGATGATGGTGAGGTG
CTGAGGTGGGGATTAGGAGTCTGGATATGCTAGTAATAAATGAGATTCTAACTTGA

hide sequence

RefSeq Acc Id:

XM_006254680 ⟹ XP_006254742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI
mRatBN7.2	18	34,273,531 - 34,336,124 (+)	NCBI
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI

Sequence:

show sequence

CTCCCGCCCACCTGGGCCTCCGGGCTAGGTTGAGTGGGGCTCTTGGGTTAGTTCCTGTTAGGCC
CCGGCCCAGGGAGTAGGTGAAGTCTATAAGATGCCCGGTGGGTCAGGGCACTCGGAGCTGTGAG
GGAACGTGAGGCGGCGTAGAGCGGAGACCCGCGGCGGGCCTTAGGAGGAGCGGCGGCCGAGCCC
GCCTTCCCTGCACCATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACT
GGAGCCGATATGTGATGCTGACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAG
GACAAACCTGAGAAGGAATTGAAAGCCTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAG
AGACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTTTATACTAAAAACTACCTTCCACCATT
GGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTA
TTTCAAGAGCCAGCAGAAGAAGAACGAGATGTTAGAAAGAAGAAATATCCTAGTCCCCAGAAGA
GTCGTTCAGAATCTAGTGAGCGAAGGACACGTGAGAAGAAAAGAGAAGATGGCAAGTGGAGAGA
CTATGAGCGGTACTATGAGCGGAACGAGCTGTACCGGGAGAAGTATGACTGGAGAAGGGGCAGG
AGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAGCA
AAGACCGGGATCCAAATAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGTGAAAGAAA
TGACCTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCCAACTCTTCTGAGCAGTATTCC
TCTGGGGCACAGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACA
CAACCGAGAGCTGGTCCAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCC
ACCACCAAAGAGACGCTGCAGAGATTATGATGGACCTCCCATTTCACAGTCAAGCTTAATAAAC
AGCCGTGACCAGCCTGGAACAAGTGCAGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTC
CTCCTTTACCCCAGAACCTCCTTTATACAGTATCAGAAAGACAGCCCATGTATTCTCGTGAACA
TGGTGCTGCTGCATCTGAGCGACTTCAGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTG
GTGCCACCTCGAAACCTCATGGGATCCTCCATTGGGTATCATACCTCAGTCTCCAGCCCCACCC
CTCTGGTCCCAGATACATATGAACCAGATGGTTATAATCCTGAAGCACCTAGTATCACCAGTTC
TGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAGCACAGACACAGCGTCCCAACCTGATTGGC
CTCACATCTGGAGATATGGATGCAAATCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCAC
CAGTTCCTGTTTCAATTAATAGCAACATCACCAGAGTAGTTCTGGAACCAGAGAGCCGAAAGAG
AGCTATTAGTGGTTTGGAAGGGCCCCTTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAAC
AATCAGAGTAAACCAGGCTTCTTAAGGAAGAATCAGTACACAAACACCAAATTAGAAGTGAAAA
AAATTCCCCAGGAATTGAACAACATTACCAAGCTCAATGAACACTTCAGCAAATTTGGAACCAT
AGTTAATATCCAGGTTGCTTTTAAAGGTGATCCAGAAGCAGCACTCATCCAGTACCTTACCAAT
GAGGAGGCCAGGAAAGCCATTTCTAGCACAGAAGCTGTTTTGAACAATCGGTTCATTCGAGTCC
TATGGCACAGAGAGAACAATGAGCAACCAGCACTCCAGTCCTCAGCACAGATTCTCCTGCAGCA
GCAACATACCCTGAGTCACCTTTCACAGCAGCACCACAACCTACCACAGCATCTTCATCCGCAG
CAGGTGATGGTAACCCAGTCTTCCCCCTCTTCAGTCCACGGAGGCATCCAAAAGATGATGGGCA
AACCACAGACCTCTGGTGCCTATGTTCTTAACAAAGTACCTGTTAAACACCGTCTTGGACATGC
AACTACTAACCAGAGTGACACATCTCACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGACGAT
TGCCCGGTTTTTTCTACTCCAGGCCATCCAAAAACAATTTACAGTTCCTCGAACTTAAAGGCAC
CTTCAAAACTTTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAGAAGAAACAGGA
AGCTATGAAGTTACAGCAAGACATGAGGAAAAAGAGACAAGAAATGTTGGAAAAGCAGATAGAA
TGCCAGAAGATGCTGATCTCTAAACTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAA
ACATAATGAAGACCTTGAAAGAACTGGGAGAGAAGATCTCACAATTGAAGGATGAATTAAAAAC
ATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAGAAGGAATTGTTG
GACACAGAACTGGACCTCCACAAGAGGCTCTCCTCAGGAGAAGATACAACAGAGTTACGCAAAA
AGCTCAGTCAGTTACAAGTCGAGGCTGCCAGATTGGGTATTTTACCTGTGGGGCGAGGAAAGAC
CATGTCCTCTCAAGGCCGAGGAAGAGGCCGGGGTCGAGGAAGAGGGAGGGGCTCACTGAATCAC
ATGGTGGTGGACCACCGCCCCAAAGCACTCCCAGCTGGAGGGTTCATTGAGGAGGAAAAGGAGG
AGTTGCTCCAGCATTTCTCAGCTACAAACCAATCGTCTAAATTCAAAGACCGTCGGCTACAGAT
ATCGTGGCACAAGCCCAAGGTACCGTCTATATCTACTGAGACTGAGGAAGAAGAAGTCAAAGAA
GAGGTAAAGTCAGCTATTAGAGAAACAGAAACCTCAGATTTGTTTTTGCATGATGATGATGATG
AAGATGAAGATGAATATGAGTCTCGTTCGTGGCGAAGATGAAATTTGATGCGAGTTGTGTAATT
TTTAGAAATATTGTTTAGAAGAACAACTTTTTAGAATTATTTAAAGAAGTCAATGAGCCAAAAA
AAATTTTTTTTCTCTTCAACACAGTAGGTTTAAGGACAGCAAGTTGCTATTCAAACACATCTCA
TAATTGTCTGTGATATCAAATCACCAGAGGCCGTGACTTTACACAGTTGTGAAGACCCACAGGA
GTGACCGGATTCTCTAGAACCTTACCCTCCACACCATCTGCTTCTGCTCTTGGTGCTGGATTCA
GTGTAAAGACAGGGTGTTCAGAAATTTTATTTTGGATTATAAATCTGCTGATAAAAATTTCATT
AAATGTCAAAATCGCCTGGAATCTCTTAACTCTTAGCTATTATGGATGGGTCGTCAGACAGTTG
GAGATGCTTGTAATTTAAATACCTTTTCCTTTCAAGAATGATCTTGGAAGAAAAGTAAATTTAA
TTTTTTTTTTTTAAACAATGGAAGAACCCACTTTATAAGTCAGTCTTTTTCAGAGTTTATGTGT
GGCAAAGCTGCAGCAAAACCACCGTCTCTGTTCCCAGAAGCTGCAGAGCACAAAGCTGGCTCTG
CTGCGTCCTCTCCTCGCTCACACCTGCCCTGGGGCTTCTGTTTTGAAATGTGCTGGGCATTGCC
TCAGTTGTCCTCCTACCCCTTTTAAATAAACCTCATTTTGCCTTTTGCCCTTTTACTTATTCCC
TTGTATCTTTTTCACTCCTTTTGATTAATAAGCCTGACTTTTTGAAATGAGTGATTCAGTTGGG
CAATCAAGAATCAGTCATCAGTAAAAGGTTTAAACCAGCACCTTTGTAAAGAAGTGATGCTTTG
ATGAAAATAAAGGCGGAATTTTAGGGCACAGAGATACTGGCTTCCCTCCCCTTTAAAGCTTCAG
CGTAGTTACAGTTACCCCAAAGGCTGACGGTCTCTTCTGCATTGTAATGATGATGGTGAGGTGC
TGAGGTGGGGATTAGGAGTCTGGATATGCTAGTAATAAATGAGATTCTAACTTGA

hide sequence

RefSeq Acc Id:

XM_008772179 ⟹ XP_008770401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI
mRatBN7.2	18	34,273,531 - 34,336,124 (+)	NCBI
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI

Sequence:

show sequence

CTCCCGCCCACCTGGGCCTCCGGGCTAGGTTGAGTGGGGCTCTTGGGTTAGTTCCTGTTAGGCC
CCGGCCCAGGGAGTAGGTGAAGTCTATAAGATGCCCGGTGGGTCAGGGCACTCGGAGCTGTGAG
GGAACGTGAGGCGGCGTAGAGCGGAGACCCGCGGCGGGCCTTAGGAGGAGCGGCGGCCGAGCCC
GCCTTCCCTGCACCATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACT
GGAGCCGATATGTGATGCTGACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAG
GACAAACCTGAGAAGGAATTGAAAGCCTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAG
AGACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTTTATACTAAAAACTACCTTCCACCATT
GGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTA
TTTCAAGAGCCAGCAGAAGAAGAACGAGATGTTAGAAAGAAGAAATATCCTAGTCCCCAGAAGA
GTCGTTCAGAATCTAGTGAGCGAAGGACACGTGAGAAGAAAAGAGAAGATGGCAAGTGGAGAGA
CTATGAGCGGTACTATGAGCGGAACGAGCTGTACCGGGAGAAGTATGACTGGAGAAGGGGCAGG
AGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAGCA
AAGACCGGGATCCAAATAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGTGAAAGAAA
TGACCTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCCAACTCTTCTGAGCAGTATTCC
TCTGGGGCACAGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACA
CAACCGAGAGCTGGTCCAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCC
ACCACCAAAGAGACGCTGCAGAGATTATGATGAAAGAGGATTTTGTGTACTTGGTGACCTTTGT
CAGTTTGATCATGGAAATGATCCTCTAGTTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTT
TCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACCACCTCCCGGAATGTTAATGCCTCCAATGCC
AGGCCCAGGCCCAGGCCCTGGTCCTGGCCCTGGCCCTGGTCCCGGCCCAGGCCCAGGCCCTGGC
CATAGTATGAGACTTCCTGTTCCTCAAGGACATGGTCAGCCTCCACCTTCTGTTGTGCTTCCCA
TACCAAGACCTCCCATTTCACAGTCAAGCTTAATAAACAGCCGTGACCAGCCTGGAACAAGTGC
AGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTCCTCCTTTACCCCAGAACCTCCTTTAT
ACAGTATCAGAAAGACAGCCCATGTATTCTCGTGAACATGGTGCTGCTGCATCTGAGCGACTTC
AGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTGGTGCCACCTCGAAACCTCATGGGATC
CTCCATTGGGTATCATACCTCAGTCTCCAGCCCCACCCCTCTGGTCCCAGATACATATGAACCA
GATGGTTATAATCCTGAAGCACCTAGTATCACCAGTTCTGGTAGATCTCAGTACAGACAGTTCT
TTTCAAGAGCACAGACACAGCGTCCCAACCTGATTGGCCTCACATCTGGAGATATGGATGCAAA
TCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCACCAGTTCCTGTTTCAATTAATAGCAAC
ATCACCAGAGTAGTTCTGGAACCAGAGAGCCGAAAGAGAGCTATTAGTGGTTTGGAAGGGCCCC
TTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAACAATCAGAGTAAACCAGGCTTCTTAAG
GAAGAATCAGTACACAAACACCAAATTAGAAGTGAAAAAAATTCCCCAGGAATTGAACAACATT
ACCAAGCTCAATGAACACTTCAGCAAATTTGGAACCATAGTTAATATCCAGGTTGCTTTTAAAG
GTGATCCAGAAGCAGCACTCATCCAGTACCTTACCAATGAGGAGGCCAGGAAAGCCATTTCTAG
CACAGAAGCTGTTTTGAACAATCGGTTCATTCGAGTCCTATGGCACAGAGAGAACAATGAGCAA
CCAGCACTCCAGTCCTCAGCACAGATTCTCCTGCAGCAGCAACATACCCTGAGTCACCTTTCAC
AGCAGCACCACAACCTACCACAGCATCTTCATCCGCAGCAGGTGATGGTAACCCAGTCTTCCCC
CTCTTCAGTCCACGGAGGCATCCAAAAGATGATGGGCAAACCACAGACCTCTGGTGCCTATGTT
CTTAACAAAGTACCTGTTAAACACCGTCTTGGACATGCAACTACTAACCAGAGTGACACATCTC
ACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGACGATTGCCCGGTTTTTTCTACTCCAGGCCA
TCCAAAAACAATTTACAGTTCCTCGAACTTAAAGGCACCTTCAAAACTTTGTTCAGGGTCTAAA
TCTCATGATGTTCAAGAAGTGCTTAAGAAGAAACAGGAAGCTATGAAGTTACAGCAAGACATGA
GGAAAAAGAGACAAGAAATGTTGGAAAAGCAGATAGAATGCCAGAAGATGCTGATCTCTAAACT
AGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAAACATAATGAAGACCTTGAAAGAACTG
GGAGAGAAGATCTCACAATTGAAGGATGAATTAAAAACATCTTCTGCAGTCTCCACACCATCTA
AAGTAAAGACAAAAACAGAGGCCCAGAAGGAATTGTTGGACACAGAACTGGACCTCCACAAGAG
GCTCTCCTCAGGAGAAGATACAACAGAGTTACGCAAAAAGCTCAGTCAGTTACAAGTCGAGGCT
GCCAGATTGGGTATTTTACCTGTGGGGCGAGGAAAGACCATGTCCTCTCAAGGCCGAGGAAGAG
GCCGGGGTCGAGGAAGAGGGAGGGGCTCACTGAATCACATGGTGGTGGACCACCGCCCCAAAGC
ACTCCCAGCTGGAGGGTTCATTGAGGAGGAAAAGGAGGAGTTGCTCCAGCATTTCTCAGCTACA
AACCAATCGTCTAAATTCAAAGACCGTCGGCTACAGATATCGTGGCACAAGCCCAAGGTACCGT
CTATATCTACTGAGACTGAGGAAGAAGAAGTCAAAGAAGAGGTAAAGTCAGCTATTAGAGAAAC
AGAAACCTCAGATTTGTTTTTGCATGATGATGATGATGAAGATGAAGATGAATATGAGTCTCGT
TCGTGGCGAAGATGAAATTTGATGCGAGTTGTGTAATTTTTAGAAATATTGTTTAGAAGAACAA
CTTTTTAGAATTATTTAAAGAAGTCAATGAGCCAAAAAAAATTTTTTTTCTCTTCAACACAGTA
GGTTTAAGGACAGCAAGTTGCTATTCAAACACATCTCATAATTGTCTGTGATATCAAATCACCA
GAGGCCGTGACTTTACACAGTTGTGAAGACCCACAGGAGTGACCGGATTCTCTAGAACCTTACC
CTCCACACCATCTGCTTCTGCTCTTGGTGCTGGATTCAGTGTAAAGACAGGGTGTTCAGAAATT
TTATTTTGGATTATAAATCTGCTGATAAAAATTTCATTAAATGTCAAAATCGCCTGGAATCTCT
TAACTCTTAGCTATTATGGATGGGTCGTCAGACAGTTGGAGATGCTTGTAATTTAAATACCTTT
TCCTTTCAAGAATGATCTTGGAAGAAAAGTAAATTTAATTTTTTTTTTTTAAACAATGGAAGAA
CCCACTTTATAAGTCAGTCTTTTTCAGAGTTTATGTGTGGCAAAGCTGCAGCAAAACCACCGTC
TCTGTTCCCAGAAGCTGCAGAGCACAAAGCTGGCTCTGCTGCGTCCTCTCCTCGCTCACACCTG
CCCTGGGGCTTCTGTTTTGAAATGTGCTGGGCATTGCCTCAGTTGTCCTCCTACCCCTTTTAAA
TAAACCTCATTTTGCCTTTTGCCCTTTTACTTATTCCCTTGTATCTTTTTCACTCCTTTTGATT
AATAAGCCTGACTTTTTGAAATGAGTGATTCAGTTGGGCAATCAAGAATCAGTCATCAGTAAAA
GGTTTAAACCAGCACCTTTGTAAAGAAGTGATGCTTTGATGAAAATAAAGGCGGAATTTTAGGG
CACAGAGATACTGGCTTCCCTCCCCTTTAAAGCTTCAGCGTAGTTACAGTTACCCCAAAGGCTG
ACGGTCTCTTCTGCATTGTAATGATGATGGTGAGGTGCTGAGGTGGGGATTAGGAGTCTGGATA
TGCTAGTAATAAATGAGATTCTAACTTGA

hide sequence

RefSeq Acc Id:

XM_063277467 ⟹ XP_063133537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI

RefSeq Acc Id:

XM_063277468 ⟹ XP_063133538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI

RefSeq Acc Id:

XM_063277469 ⟹ XP_063133539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101899	(Get FASTA)	NCBI Sequence Viewer
	NP_001359273	(Get FASTA)	NCBI Sequence Viewer
	XP_006254740	(Get FASTA)	NCBI Sequence Viewer
	XP_006254742	(Get FASTA)	NCBI Sequence Viewer
	XP_008770401	(Get FASTA)	NCBI Sequence Viewer
	XP_063133537	(Get FASTA)	NCBI Sequence Viewer
	XP_063133538	(Get FASTA)	NCBI Sequence Viewer
	XP_063133539	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76482	(Get FASTA)	NCBI Sequence Viewer
	EDL76483	(Get FASTA)	NCBI Sequence Viewer
	EDL76484	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035970.6
	ENSRNOP00000079719.1
	ENSRNOP00000081461.1
	ENSRNOP00000089585.1
	ENSRNOP00000096280.1

RefSeq Acc Id:	XP_006254740 ⟸ XM_006254678
- Peptide Label:	isoform X2
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGF VDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSES SERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDP NRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW SNYYNNHSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPP PGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPP ISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSENTYEPDGYNPEAPSITSSGRSQ YRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAISG LEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQ VAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTL SHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHATTNQ SDTSHLLNQTGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKL QQDMRKKRQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAV STPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQ GRGRGRGRGRGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQHFSATNQSSKFKDRRLQISWHK PKVPSISTETEEEEVKEEVKSAIRETETSDLFLHDDDDEDEDEYESRSWRR hide sequence

RefSeq Acc Id:	XP_006254742 ⟸ XM_006254680
- Peptide Label:	isoform X3
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGF VDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSES SERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDP NRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW SNYYNNHSSSNSFGRNPPPKRRCRDYDGPPISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQ NLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPD TYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVS INSNITRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQE LNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRE NNEQPALQSSAQILLQQQHTLSHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTS GAYVLNKVPVKHRLGHATTNQSDTSHLLNQTGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLC SGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKT LKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQL QVEAARLGILPVGRGKTMSSQGRGRGRGRGRGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQH FSATNQSSKFKDRRLQISWHKPKVPSISTETEEEEVKEEVKSAIRETETSDLFLHDDDDEDEDE YESRSWRR hide sequence

RefSeq Acc Id:	XP_008770401 ⟸ XM_008772179
- Peptide Label:	isoform X1
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGF VDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSES SERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDP NRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW SNYYNNHSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPP PGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPP ISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTP PPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQ TQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAISGLEGPLTKKP WLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEA ALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHN LPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHATTNQSDTSHLLNQ TGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQ EMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTK TEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRG RGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQHFSATNQSSKFKDRRLQISWHKPKVPSISTE TEEEEVKEEVKSAIRETETSDLFLHDDDDEDEDEYESRSWRR hide sequence

Ensembl Acc Id:

ENSRNOP00000035970 ⟸ ENSRNOT00000036613

RefSeq Acc Id:	NP_001359273 ⟸ NM_001372344
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I5ZS16 (UniProtKB/TrEMBL), F1M1R4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001101899 ⟸ NM_001108429
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I5ZN77 (UniProtKB/TrEMBL), F1M1R4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000096280 ⟸ ENSRNOT00000119169

Ensembl Acc Id:

ENSRNOP00000081461 ⟸ ENSRNOT00000119222

Ensembl Acc Id:

ENSRNOP00000089585 ⟸ ENSRNOT00000099893

Ensembl Acc Id:

ENSRNOP00000079719 ⟸ ENSRNOT00000108854

RefSeq Acc Id:	XP_063133537 ⟸ XM_063277467
- Peptide Label:	isoform X4
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL), A0A8I6AS62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133538 ⟸ XM_063277468
- Peptide Label:	isoform X5
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133539 ⟸ XM_063277469
- Peptide Label:	isoform X6
- UniProtKB:	F1M1R4 (UniProtKB/TrEMBL)

Protein Domains

C3H1-type RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M1R4-F1-model_v2	AlphaFold	F1M1R4	1-1060	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700758

Promoter ID:

EPDNEW_R11274

Type:

initiation region

Name:

Rbm27_1

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	36,596,617 - 36,596,677	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311966	AgrOrtholog
BioCyc Gene	G2FUF-7701	BioCyc
Ensembl Genes	ENSRNOG00000027250	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036613.8	UniProtKB/TrEMBL
	ENSRNOT00000099893.1	UniProtKB/TrEMBL
	ENSRNOT00000108854.1	UniProtKB/TrEMBL
	ENSRNOT00000119169.1	UniProtKB/TrEMBL
	ENSRNOT00000119222.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	PWI domain	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	PWI_dom	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM26/27	UniProtKB/TrEMBL
	RBM27_RRM	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
NCBI Gene	361317	ENTREZGENE
PANTHER	PTHR14398	UniProtKB/TrEMBL
	RNA-BINDING PROTEIN 27	UniProtKB/TrEMBL
Pfam	PWI	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Rbm27	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027250	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5ZN77	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZS16	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AC35_RAT	UniProtKB/TrEMBL
	A0A8I6AS62	ENTREZGENE, UniProtKB/TrEMBL
	F1M1R4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rbm27	RNA binding motif protein 27	Rbm27_predicted	RNA binding motif protein 27 (predicted)	'predicted' is removed	2292626	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar