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Gene: RBM27 (RNA binding motif protein 27) Homo sapiens

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Symbol:

RBM27

Name:

RNA binding motif protein 27

RGD ID:

1323694

HGNC Page

HGNC:29243

Description:

Enables RNA binding activity. Predicted to be located in cytoplasm and nuclear speck. Predicted to be active in nucleus.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

acidic rich RS domain containing 1; ARRS1; KIAA1311; Psc1; RNA-binding motif protein 27; RNA-binding protein 27; ZC3H18; ZC3H20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Rbm27 (RNA binding motif protein 27)	HGNC	EggNOG, Ensembl, HGNC, Inparanoid, OMA, OrthoDB, Panther, Treefam
Rattus norvegicus (Norway rat):	Rbm27 (RNA binding motif protein 27)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, Panther, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Rbm27 (RNA binding motif protein 27)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	RBM27 (RNA binding motif protein 27)	NCBI	Ortholog
Canis lupus familiaris (dog):	RBM27 (RNA binding motif protein 27)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm27 (RNA binding motif protein 27)	NCBI	Ortholog
Sus scrofa (pig):	RBM27 (RNA binding motif protein 27)	HGNC	Ensembl, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	RBM27 (RNA binding motif protein 27)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Rbm27 (RNA binding motif protein 27)	NCBI	Ortholog
Other homologs ²
Rattus norvegicus (Norway rat):	Secisbp2l (SECIS binding protein 2-like)	HGNC	OMA
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm27 (RNA binding motif protein 27)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	rbm-26	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	swm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus laevis (African clawed frog):	rbm27.S	Alliance	DIOPT (Xenbase)
Xenopus tropicalis (tropical clawed frog):	rbm27	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus laevis (African clawed frog):	rbm27.L	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	146,203,605 - 146,289,223 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	146,203,605 - 146,289,223 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	145,583,168 - 145,668,786 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	145,563,306 - 145,649,220 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	141,663,078 - 141,748,705 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	140,729,821 - 140,815,498 (+)	NCBI		HuRef
CHM1_1	5	145,015,942 - 145,101,491 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	146,739,205 - 146,824,811 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM27	Human	familial adenomatous polyposis 1		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial adenomatous polyposis 1	ClinVar	PMID:17963004 more ...
RBM27	Human	Hereditary Neoplastic Syndromes		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17963004 more ...
RBM27	Human	Neurodevelopmental Disorders		IAGP	(Homo sapiens) and (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM27	Human	1,2-dimethylhydrazine	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of RBM27 mRNA	CTD	PMID:22206623
RBM27	Human	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	Rbm27 (Mus musculus)	6480464	2 more ...	CTD	PMID:31388691
RBM27	Human	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of RBM27 mRNA	CTD	PMID:32109520
RBM27	Human	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of RBM27 mRNA	CTD	PMID:34747641
RBM27	Human	2,4-dinitrotoluene	affects expression	ISO	Rbm27 (Rattus norvegicus)	6480464	2 and 4-dinitrotoluene affects the expression of RBM27 mRNA	CTD	PMID:21346803
RBM27	Human	2,6-dinitrotoluene	affects expression	ISO	Rbm27 (Rattus norvegicus)	6480464	2 and 6-dinitrotoluene affects the expression of RBM27 mRNA	CTD	PMID:21346803
RBM27	Human	3,4-methylenedioxymethamphetamine	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of RBM27 mRNA	CTD	PMID:20188158 and PMID:26251327
RBM27	Human	4,4'-sulfonyldiphenol	increases expression	ISO	Rbm27 (Mus musculus)	6480464	bisphenol S results in increased expression of RBM27 mRNA	CTD	PMID:39298647
RBM27	Human	aflatoxin M1	decreases expression	EXP		6480464	Aflatoxin M1 results in decreased expression of RBM27 mRNA	CTD	PMID:30928695
RBM27	Human	aristolochic acid A	decreases expression	EXP		6480464	aristolochic acid I results in decreased expression of RBM27 mRNA	CTD	PMID:33212167
RBM27	Human	arsenite(3-)	multiple interactions	EXP		6480464	arsenite inhibits the reaction [G3BP1 protein binds to RBM27 mRNA]	CTD	PMID:32406909
RBM27	Human	benzo[a]pyrene	increases methylation	ISO	Rbm27 (Mus musculus)	6480464	Benzo(a)pyrene results in increased methylation of RBM27 intron	CTD	PMID:27901495
RBM27	Human	benzo[a]pyrene diol epoxide I	affects expression	EXP		6480464	7 more ...	CTD	PMID:20382639
RBM27	Human	bisphenol A	increases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of RBM27 mRNA	CTD	PMID:30816183
RBM27	Human	bisphenol A	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	bisphenol A results in decreased expression of RBM27 mRNA	CTD	PMID:33221593
RBM27	Human	cadmium dichloride	increases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Cadmium Chloride results in increased expression of RBM27 mRNA	CTD	PMID:33453195
RBM27	Human	cobalt dichloride	increases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	cobaltous chloride results in increased expression of RBM27 mRNA	CTD	PMID:24386269
RBM27	Human	copper(II) sulfate	increases expression	EXP		6480464	Copper Sulfate results in increased expression of RBM27 mRNA	CTD	PMID:19549813
RBM27	Human	Dibutyl phosphate	affects expression	EXP		6480464	di-n-butylphosphoric acid affects the expression of RBM27 mRNA	CTD	PMID:37042841
RBM27	Human	enzyme inhibitor	multiple interactions	EXP		6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of RBM27 protein	CTD	PMID:23301498
RBM27	Human	ethanol	affects splicing	ISO	Rbm27 (Mus musculus)	6480464	Ethanol affects the splicing of RBM27 mRNA	CTD	PMID:30319688
RBM27	Human	FR900359	affects phosphorylation	EXP		6480464	FR900359 affects the phosphorylation of RBM27 protein	CTD	PMID:37730182
RBM27	Human	furan	increases methylation	ISO	Rbm27 (Rattus norvegicus)	6480464	furan results in increased methylation of RBM27 gene	CTD	PMID:22079235
RBM27	Human	gentamycin	increases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Gentamicins results in increased expression of RBM27 mRNA	CTD	PMID:22061828
RBM27	Human	glutathione	decreases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Glutathione deficiency results in decreased expression of RBM27 mRNA	CTD	PMID:20621112
RBM27	Human	methotrexate	increases expression	EXP		6480464	Methotrexate results in increased expression of RBM27 mRNA	CTD	PMID:24449571
RBM27	Human	methylmercury chloride	decreases expression	EXP		6480464	methylmercuric chloride results in decreased expression of RBM27 mRNA	CTD	PMID:28001369
RBM27	Human	perfluorohexanesulfonic acid	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of RBM27 mRNA	CTD	PMID:37995155
RBM27	Human	phenobarbital	affects expression	ISO	Rbm27 (Mus musculus)	6480464	Phenobarbital affects the expression of RBM27 mRNA	CTD	PMID:23091169
RBM27	Human	serpentine asbestos	decreases methylation	EXP		6480464	Asbestos and Serpentine results in decreased methylation of RBM27 promoter	CTD	PMID:29626692
RBM27	Human	thioacetamide	increases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of RBM27 mRNA	CTD	PMID:34492290
RBM27	Human	titanium dioxide	increases methylation	ISO	Rbm27 (Mus musculus)	6480464	titanium dioxide results in increased methylation of RBM27 gene	CTD	PMID:35295148
RBM27	Human	titanium dioxide	decreases methylation	ISO	Rbm27 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of RBM27 gene	CTD	PMID:35295148
RBM27	Human	trichloroethene	decreases expression	ISO	Rbm27 (Rattus norvegicus)	6480464	Trichloroethylene results in decreased expression of RBM27 mRNA	CTD	PMID:33387578
RBM27	Human	tungsten	decreases expression	ISO	Rbm27 (Mus musculus)	6480464	Tungsten results in decreased expression of RBM27 mRNA	CTD	PMID:30912803
RBM27	Human	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of RBM27 mRNA	CTD	PMID:23179753

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM27	Human	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
RBM27	Human	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
RBM27	Human	nuclear speck	located_in	IEA	UniProtKB-SubCell:SL-0186	150520179		UniProt	GO_REF:0000044
RBM27	Human	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
RBM27	Human	nucleus	is_active_in	IBA	FB:FBgn0002044 more ...	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RBM27	Human	metal ion binding	enables	IEA	InterPro:IPR000571	150520179		InterPro	GO_REF:0000002
RBM27	Human	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
RBM27	Human	nucleic acid binding	enables	IEA	InterPro:IPR035979	150520179		InterPro	GO_REF:0000002
RBM27	Human	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	150520179		UniProt	GO_REF:0000043
RBM27	Human	RNA binding	enables	IBA	FB:FBgn0002044 more ...	150520179		GO_Central	GO_REF:0000033
RBM27	Human	RNA binding	enables	IEA	UniRule:UR000414619	150520179		UniProt	GO_REF:0000104
RBM27	Human	RNA binding	enables	IEA	InterPro:IPR000504	150520179		InterPro	GO_REF:0000002
RBM27	Human	RNA binding	enables	HDA		150520179	PMID:22658674 and PMID:22681889	UniProt	PMID:22658674 and PMID:22681889
RBM27	Human	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	GOAs Human GO annotations	GOA_HUMAN data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10718198	PMID:12477932	PMID:14702039	PMID:15372022	PMID:15489334	PMID:15741184	PMID:16964243	PMID:18029348	PMID:20379614	PMID:21873635	PMID:22658674	PMID:22681889
PMID:22939629	PMID:24332808	PMID:25281560	PMID:25452129	PMID:25544563	PMID:26186194	PMID:26209609	PMID:26344197	PMID:26496610	PMID:26687479	PMID:26760575	PMID:26972000
PMID:27248496	PMID:28186131	PMID:28514442	PMID:29117863	PMID:29128334	PMID:29180619	PMID:29298432	PMID:29395067	PMID:29507755	PMID:29778605	PMID:29802200	PMID:29845934
PMID:30097533	PMID:30196744	PMID:30209976	PMID:30415952	PMID:30463901	PMID:30585729	PMID:30804502	PMID:30884312	PMID:30975701	PMID:31091453	PMID:31300519	PMID:31527615
PMID:31551363	PMID:31553912	PMID:31586073	PMID:31950173	PMID:32031713	PMID:32239614	PMID:32344865	PMID:32416067	PMID:32538781	PMID:32707033	PMID:32807901	PMID:32908313
PMID:32989298	PMID:33397691	PMID:33417871	PMID:33640491	PMID:33742100	PMID:33916271	PMID:33961781	PMID:34079125	PMID:34189442	PMID:34244482	PMID:34244565	PMID:34349018
PMID:34535262	PMID:34597346	PMID:35140242	PMID:35198878	PMID:35271311	PMID:35439318	PMID:35446349	PMID:35543156	PMID:35545047	PMID:35652658	PMID:35850772	PMID:35915203
PMID:35944360	PMID:36114006	PMID:36215168	PMID:36232890	PMID:36244648	PMID:36261009	PMID:36373674	PMID:36424410	PMID:36526897	PMID:36912080	PMID:37267103	PMID:37723588
PMID:37774976	PMID:37827155	PMID:37875486	PMID:38113892	PMID:38280479	PMID:38334954	PMID:38697112	PMID:39250314

RBM27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	146,203,605 - 146,289,223 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	146,203,605 - 146,289,223 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	145,583,168 - 145,668,786 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	145,563,306 - 145,649,220 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	141,663,078 - 141,748,705 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	140,729,821 - 140,815,498 (+)	NCBI		HuRef
CHM1_1	5	145,015,942 - 145,101,491 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	146,739,205 - 146,824,811 (+)	NCBI		T2T-CHM13v2.0

Rbm27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	42,408,386 - 42,474,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	42,408,418 - 42,474,607 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	42,275,205 - 42,341,542 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	42,275,353 - 42,341,542 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	42,435,007 - 42,501,196 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	42,401,326 - 42,467,522 (+)	NCBI		MGSCv36	mm8
Celera	18	43,636,829 - 43,703,015 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	22.45	NCBI

Rbm27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,524,523 - 34,587,115 (+)	NCBI		GRCr8
mRatBN7.2	18	34,273,527 - 34,336,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,273,527 - 34,334,126 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	34,377,713 - 34,438,299 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,096,031 - 35,156,627 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,472,938 - 34,533,528 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,596,568 - 36,657,157 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,596,585 - 36,656,314 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	36,261,314 - 36,324,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,497,009 - 35,534,875 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	35,509,050 - 35,571,571 (+)	NCBI
Celera	18	33,870,445 - 33,933,031 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

Rbm27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	7,829,022 - 7,901,720 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	7,829,022 - 7,901,617 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBM27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	141,455,854 - 141,544,561 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	139,595,425 - 139,679,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	141,651,921 - 141,736,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	147,666,510 - 147,751,458 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	147,666,510 - 147,751,217 (+)	Ensembl	panpan1.1		panPan2

RBM27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	40,634,447 - 40,709,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	37,678,715 - 37,753,551 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	41,098,063 - 41,173,232 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	41,098,110 - 41,170,894 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	38,164,782 - 38,239,619 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	38,981,171 - 39,055,972 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	39,806,487 - 39,881,360 (+)	NCBI		UU_Cfam_GSD_1.0

Rbm27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	146,827,213 - 146,908,028 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	8,400,445 - 8,482,011 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	8,401,186 - 8,481,986 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	147,569,793 - 147,644,237 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	147,569,762 - 147,644,243 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	154,039,672 - 154,075,885 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	48,779,604 - 48,864,906 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	48,779,623 - 48,861,585 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	28,925,146 - 29,010,987 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	5,691,601 - 5,764,721 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	5,691,699 - 5,766,931 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in RBM27
62 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3	copy number gain	See cases [RCV000051193]	Chr5:130860928..155321811 [GRCh38] Chr5:130196621..154701371 [GRCh37] Chr5:130224520..154681564 [NCBI36] Chr5:5q23.3-33.2	pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1	copy number loss	See cases [RCV000053524]	Chr5:106619588..156124387 [GRCh38] Chr5:105955289..155551397 [GRCh37] Chr5:105983188..155483975 [NCBI36] Chr5:5q21.3-33.2	pathogenic
GRCh38/hg38 5q32(chr5:145197355-148541511)x1	copy number loss	See cases [RCV000136679]	Chr5:145197355..148541511 [GRCh38] Chr5:144576918..147921074 [GRCh37] Chr5:144557111..147901267 [NCBI36] Chr5:5q32	pathogenic
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3	copy number gain	See cases [RCV000138808]	Chr5:129847794..153353546 [GRCh38] Chr5:129183487..152733106 [GRCh37] Chr5:129211386..152713299 [NCBI36] Chr5:5q23.3-33.2	pathogenic
GRCh38/hg38 5q31.3-32(chr5:141089988-149530678)x3	copy number gain	See cases [RCV000139504]	Chr5:141089988..149530678 [GRCh38] Chr5:140469572..148910241 [GRCh37] Chr5:140449756..148890434 [NCBI36] Chr5:5q31.3-32	pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3	copy number gain	not provided [RCV000487658]	Chr5:94844077..178830410 [GRCh37] Chr5:5q15-35.3	likely benign
NC_000005.9:g.(?_86400000)_(154000000_?)del	deletion	Familial adenomatous polyposis 1 [RCV004561496]\|Hereditary cancer-predisposing syndrome [RCV000554476]	Chr5:86400000..154000000 [GRCh37] Chr5:5q14.3-33.2	pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3	copy number gain	See cases [RCV000449349]	Chr5:130125085..157574910 [GRCh37] Chr5:5q23.3-33.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)	copy number gain	See cases [RCV000510723]	Chr5:113577..180719789 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3	copy number gain	See cases [RCV000448245]	Chr5:106716357..180687338 [GRCh37] Chr5:5q21.3-35.3	pathogenic
GRCh37/hg19 5q31.3-32(chr5:141113273-149154835)x1	copy number loss	See cases [RCV000510497]	Chr5:141113273..149154835 [GRCh37] Chr5:5q31.3-32	pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1	copy number loss	See cases [RCV000511978]	Chr5:17628741..176575720 [GRCh37] Chr5:5p15.1-q35.2	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3	copy number gain	See cases [RCV000512039]	Chr5:113577..180719789 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
NM_018989.2(RBM27):c.754A>C (p.Thr252Pro)	single nucleotide variant	not specified [RCV004310967]	Chr5:146230821 [GRCh38] Chr5:145610384 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1321G>C (p.Glu441Gln)	single nucleotide variant	not specified [RCV004308693]	Chr5:146251752 [GRCh38] Chr5:145631315 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2212T>A (p.Ser738Thr)	single nucleotide variant	not specified [RCV004301238]	Chr5:146263512 [GRCh38] Chr5:145643075 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.602G>T (p.Arg201Ile)	single nucleotide variant	not specified [RCV004326555]	Chr5:146230669 [GRCh38] Chr5:145610232 [GRCh37] Chr5:5q32	uncertain significance
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3	copy number gain	not provided [RCV000744317]	Chr5:13648..180905029 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3	copy number gain	not provided [RCV000744323]	Chr5:25328..180693344 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
Single allele	deletion	Neurodevelopmental disorder [RCV000787436]	Chr5:14685137..149511942 [GRCh37] Chr5:5p15.2-q32	uncertain significance
Single allele	deletion	Neurodevelopmental disorder [RCV000787435]	Chr5:144027815..146077337 [GRCh37] Chr5:5q31.3-32	uncertain significance
GRCh37/hg19 5q31.3-32(chr5:140424333-148985999)x3	copy number gain	not provided [RCV000848228]	Chr5:140424333..148985999 [GRCh37] Chr5:5q31.3-32	uncertain significance
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)	copy number gain	not specified [RCV002053526]	Chr5:130125085..157574910 [GRCh37] Chr5:5q23.3-33.3	pathogenic
NM_018989.2(RBM27):c.3061A>G (p.Ile1021Val)	single nucleotide variant	not specified [RCV004307926]	Chr5:146284694 [GRCh38] Chr5:145664257 [GRCh37] Chr5:5q32	likely benign
NM_018989.2(RBM27):c.1343C>T (p.Pro448Leu)	single nucleotide variant	not specified [RCV004236135]	Chr5:146251774 [GRCh38] Chr5:145631337 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.3031A>G (p.Ile1011Val)	single nucleotide variant	not specified [RCV004109123]	Chr5:146284664 [GRCh38] Chr5:145664227 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2930C>T (p.Ala977Val)	single nucleotide variant	not specified [RCV004136825]	Chr5:146271616 [GRCh38] Chr5:145651179 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2803C>T (p.Arg935Trp)	single nucleotide variant	not specified [RCV004205387]	Chr5:146271489 [GRCh38] Chr5:145651052 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1000C>T (p.Pro334Ser)	single nucleotide variant	not specified [RCV004160497]	Chr5:146233599 [GRCh38] Chr5:145613162 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.785A>G (p.Asn262Ser)	single nucleotide variant	not specified [RCV004084636]	Chr5:146230852 [GRCh38] Chr5:145610415 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2951T>G (p.Ile984Ser)	single nucleotide variant	not specified [RCV004240655]	Chr5:146271637 [GRCh38] Chr5:145651200 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2273A>G (p.Asn758Ser)	single nucleotide variant	not specified [RCV004158599]	Chr5:146263573 [GRCh38] Chr5:145643136 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1096C>A (p.Pro366Thr)	single nucleotide variant	not specified [RCV004164381]	Chr5:146233695 [GRCh38] Chr5:145613258 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1426C>T (p.Pro476Ser)	single nucleotide variant	not specified [RCV004102516]	Chr5:146251857 [GRCh38] Chr5:145631420 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.315G>T (p.Glu105Asp)	single nucleotide variant	not specified [RCV004185267]	Chr5:146228957 [GRCh38] Chr5:145608520 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.388G>A (p.Glu130Lys)	single nucleotide variant	not specified [RCV004149342]	Chr5:146229030 [GRCh38] Chr5:145608593 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1081A>G (p.Met361Val)	single nucleotide variant	not specified [RCV004126698]	Chr5:146233680 [GRCh38] Chr5:145613243 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1433C>G (p.Pro478Arg)	single nucleotide variant	not specified [RCV004222986]	Chr5:146251864 [GRCh38] Chr5:145631427 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2299A>T (p.Asn767Tyr)	single nucleotide variant	not specified [RCV004230780]	Chr5:146263599 [GRCh38] Chr5:145643162 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.3019C>T (p.Arg1007Cys)	single nucleotide variant	not specified [RCV004080134]	Chr5:146284652 [GRCh38] Chr5:145664215 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.442C>T (p.Arg148Trp)	single nucleotide variant	not specified [RCV004150497]	Chr5:146229763 [GRCh38] Chr5:145609326 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.526C>G (p.Leu176Val)	single nucleotide variant	not specified [RCV004217315]	Chr5:146229847 [GRCh38] Chr5:145609410 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.8T>C (p.Ile3Thr)	single nucleotide variant	not specified [RCV004287436]	Chr5:146203773 [GRCh38] Chr5:145583336 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2891G>T (p.Gly964Val)	single nucleotide variant	not specified [RCV004278098]	Chr5:146271577 [GRCh38] Chr5:145651140 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2827C>G (p.Arg943Gly)	single nucleotide variant	not specified [RCV004269263]	Chr5:146271513 [GRCh38] Chr5:145651076 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.22G>A (p.Ala8Thr)	single nucleotide variant	not specified [RCV004316405]	Chr5:146203787 [GRCh38] Chr5:145583350 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.466T>G (p.Tyr156Asp)	single nucleotide variant	not specified [RCV004328615]	Chr5:146229787 [GRCh38] Chr5:145609350 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.407A>G (p.Lys136Arg)	single nucleotide variant	not specified [RCV004351750]	Chr5:146229728 [GRCh38] Chr5:145609291 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1029G>A (p.Pro343=)	single nucleotide variant	not provided [RCV003428659]	Chr5:146233628 [GRCh38] Chr5:145613191 [GRCh37] Chr5:5q32	likely benign
GRCh37/hg19 5q31.3-32(chr5:141566629-147240595)x1	copy number loss	not specified [RCV003986541]	Chr5:141566629..147240595 [GRCh37] Chr5:5q31.3-32	pathogenic
NM_018989.2(RBM27):c.1180C>T (p.Arg394Cys)	single nucleotide variant	not specified [RCV004441224]	Chr5:146237333 [GRCh38] Chr5:145616896 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.188G>A (p.Gly63Asp)	single nucleotide variant	not specified [RCV004441227]	Chr5:146223412 [GRCh38] Chr5:145602975 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2290C>T (p.His764Tyr)	single nucleotide variant	not specified [RCV004441228]	Chr5:146263590 [GRCh38] Chr5:145643153 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2687C>T (p.Thr896Met)	single nucleotide variant	not specified [RCV004441231]	Chr5:146269580 [GRCh38] Chr5:145649143 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.3153T>A (p.Asp1051Glu)	single nucleotide variant	not specified [RCV004441233]	Chr5:146286000 [GRCh38] Chr5:145665563 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.469C>T (p.Arg157Cys)	single nucleotide variant	not specified [RCV004441234]	Chr5:146229790 [GRCh38] Chr5:145609353 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.557G>A (p.Arg186His)	single nucleotide variant	not specified [RCV004441235]	Chr5:146229878 [GRCh38] Chr5:145609441 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1531A>G (p.Thr511Ala)	single nucleotide variant	not specified [RCV004441226]	Chr5:146255029 [GRCh38] Chr5:145634592 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2579C>T (p.Ala860Val)	single nucleotide variant	not specified [RCV004441229]	Chr5:146269472 [GRCh38] Chr5:145649035 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2685A>T (p.Lys895Asn)	single nucleotide variant	not specified [RCV004441230]	Chr5:146269578 [GRCh38] Chr5:145649141 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.973C>A (p.Pro325Thr)	single nucleotide variant	not specified [RCV004441236]	Chr5:146233572 [GRCh38] Chr5:145613135 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.59+3G>A	single nucleotide variant	RBM27-related disorder [RCV003964064]	Chr5:146203827 [GRCh38] Chr5:145583390 [GRCh37] Chr5:5q32	likely benign
NM_018989.2(RBM27):c.1081A>T (p.Met361Leu)	single nucleotide variant	RBM27-related disorder [RCV003944111]	Chr5:146233680 [GRCh38] Chr5:145613243 [GRCh37] Chr5:5q32	likely benign
NM_018989.2(RBM27):c.1020CCCAGGCCCGGGCCCAGGTCCAGG[1] (p.337PG[7])	microsatellite	RBM27-related disorder [RCV003956941]	Chr5:146233608..146233631 [GRCh38] Chr5:145613171..145613194 [GRCh37] Chr5:5q32	likely benign
NM_018989.2(RBM27):c.1211A>G (p.Asn404Ser)	single nucleotide variant	not specified [RCV004441225]	Chr5:146237364 [GRCh38] Chr5:145616927 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2873G>A (p.Arg958His)	single nucleotide variant	not specified [RCV004441232]	Chr5:146271559 [GRCh38] Chr5:145651122 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2992G>A (p.Ala998Thr)	single nucleotide variant	not specified [RCV004660835]	Chr5:146284625 [GRCh38] Chr5:145664188 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.449A>G (p.Tyr150Cys)	single nucleotide variant	not specified [RCV004660836]	Chr5:146229770 [GRCh38] Chr5:145609333 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2285C>A (p.Ala762Glu)	single nucleotide variant	not specified [RCV004660837]	Chr5:146263585 [GRCh38] Chr5:145643148 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2480G>A (p.Arg827Lys)	single nucleotide variant	not specified [RCV004862740]	Chr5:146269235 [GRCh38] Chr5:145648798 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.3103A>G (p.Thr1035Ala)	single nucleotide variant	not specified [RCV004862744]	Chr5:146285950 [GRCh38] Chr5:145665513 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.3020G>A (p.Arg1007His)	single nucleotide variant	not specified [RCV004862743]	Chr5:146284653 [GRCh38] Chr5:145664216 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.989G>A (p.Gly330Glu)	single nucleotide variant	not specified [RCV004862745]	Chr5:146233588 [GRCh38] Chr5:145613151 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.593A>C (p.His198Pro)	single nucleotide variant	not specified [RCV004862746]	Chr5:146230660 [GRCh38] Chr5:145610223 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2216G>A (p.Gly739Asp)	single nucleotide variant	not specified [RCV004862741]	Chr5:146263516 [GRCh38] Chr5:145643079 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1016C>T (p.Pro339Leu)	single nucleotide variant	not specified [RCV004854650]	Chr5:146233615 [GRCh38] Chr5:145613178 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.45G>C (p.Lys15Asn)	single nucleotide variant	not specified [RCV004854655]	Chr5:146203810 [GRCh38] Chr5:145583373 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2897T>C (p.Leu966Pro)	single nucleotide variant	not specified [RCV004854653]	Chr5:146271583 [GRCh38] Chr5:145651146 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.13G>A (p.Asp5Asn)	single nucleotide variant	not specified [RCV004854651]	Chr5:146203778 [GRCh38] Chr5:145583341 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.1432C>T (p.Pro478Ser)	single nucleotide variant	not specified [RCV004854654]	Chr5:146251863 [GRCh38] Chr5:145631426 [GRCh37] Chr5:5q32	uncertain significance
NM_018989.2(RBM27):c.2182A>G (p.Ile728Val)	single nucleotide variant	not specified [RCV004854652]	Chr5:146261798 [GRCh38] Chr5:145641361 [GRCh37] Chr5:5q32	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	1590
Count of miRNA genes:	893
Interacting mature miRNAs:	1097
Transcripts:	ENST00000265271, ENST00000506502, ENST00000508019
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597340408	GWAS1436482_H	serum gamma-glutamyl transferase measurement QTL GWAS1436482 (human)		3e-08	serum gamma-glutamyl transferase measurement	serum gamma-glutamyltransferase activity level (CMO:0002241)	5	146251174	146251175	Human
1357314	AASTH54_H	Allergic/atopic asthma related QTL 54 (human)	3.56	0.0003	Reversible airflow obstruction	total serum IgE	5	135892246	150155845	Human
596950748	GWAS1070267_H	Red cell distribution width QTL GWAS1070267 (human)		2e-10	Red cell distribution width		5	146278505	146278506	Human
596976732	GWAS1096251_H	Red cell distribution width QTL GWAS1096251 (human)		7e-09	Red cell distribution width		5	146278505	146278506	Human
597109406	GWAS1205480_H	Red cell distribution width QTL GWAS1205480 (human)		7e-09	Red cell distribution width	red blood cell distribution width- standard deviation (CMO:0003232)	5	146278505	146278506	Human
597088572	GWAS1184646_H	Red cell distribution width QTL GWAS1184646 (human)		2e-10	Red cell distribution width	red blood cell distribution width- standard deviation (CMO:0003232)	5	146278505	146278506	Human
407386772	GWAS1035748_H	obsolete_red blood cell distribution width QTL GWAS1035748 (human)		2e-10	obsolete_red blood cell distribution width		5	146278505	146278506	Human
407082460	GWAS731436_H	obsolete_red blood cell distribution width QTL GWAS731436 (human)		7e-09	obsolete_red blood cell distribution width		5	146278505	146278506	Human

RH101925

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	145,665,867 - 145,666,012	UniSTS	GRCh37
Build 36	5	145,646,060 - 145,646,205	RGD	NCBI36
Celera	5	141,745,786 - 141,745,931	RGD
Cytogenetic Map	5	q32	UniSTS
HuRef	5	140,812,579 - 140,812,724	UniSTS
GeneMap99-GB4 RH Map	5	553.53	UniSTS

bac51209T

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	145,616,930 - 145,617,162	UniSTS	GRCh37
Build 36	5	145,597,123 - 145,597,355	RGD	NCBI36
Celera	5	141,696,848 - 141,697,080	RGD
Cytogenetic Map	5	q32	UniSTS
HuRef	5	140,763,594 - 140,763,826	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2577	2790	2286	5345	1769	2615	12	646	2189	490	2535	7734	6739	106	3846	2	917	1871	1853	187	2


RefSeq Transcripts	NM_018989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB037732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC011356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC091959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK026358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK074316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK128738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL833706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC009537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC029648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC033524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX647384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000265271 ⟹ ENSP00000265271

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	146,203,605 - 146,289,223 (+)	Ensembl

Ensembl Acc Id:

ENST00000506502 ⟹ ENSP00000475384

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	146,203,550 - 146,339,251 (+)	Ensembl

Ensembl Acc Id:

ENST00000508019

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	146,261,383 - 146,263,519 (+)	Ensembl

RefSeq Acc Id:

NM_018989 ⟹ NP_061862

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,203,605 - 146,289,223 (+)	NCBI
GRCh37	5	145,583,113 - 145,668,786 (+)	NCBI
Celera	5	141,663,078 - 141,748,705 (+)	RGD
HuRef	5	140,729,821 - 140,815,498 (+)	ENTREZGENE
CHM1_1	5	145,015,942 - 145,101,491 (+)	NCBI
T2T-CHM13v2.0	5	146,739,205 - 146,824,811 (+)	NCBI

Sequence:

show sequence

AGTTCCTGTTAGGCCCCGGCCGGGGGAGTAGGTTGAAGTCTCCTAAGATGCCCGGTGGGCTGGGGCACCGGGAGCTGTGAAGGGAACGTGAGGGGGCGGCGTAGTGGAGACCCACGGCAGGCCTGAAG
AAGAGCGGCGGCCGAGCCCGCCTTCCCTGCACCATGCTCATAGAGGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACTGGAGCCGATATGTGATGCTGATCCTTCAGCCTTAGCCAACTATGT
TGTAGCACTGGTCAAGAAGGACAAACCTGAGAAAGAATTAAAAGCCTTTTGTGCTGATCAACTTGATGTCTTTTTACAAAAAGAAACTTCAGGTTTTGTGGACAAACTATTTGAAAGTCTCTATACTA
AGAACTACCTTCCACTTTTGGAACCAGTAAAGCCTGAGCCAAAACCACTAGTCCAAGAAAAAGAAGAAATTAAAGAAGAGGTATTTCAGGAGCCAGCAGAGGAAGAACGAGATGGCAGAAAAAAGAAA
TATCCTAGTCCCCAGAAGACTCGTTCAGAATCTAGTGAACGAAGGACACGTGAGAAAAAAAGAGAAGACGGGAAATGGAGAGACTATGACCGGTACTATGAGCGGAATGAATTGTACCGTGAGAAGTA
TGACTGGAGAAGAGGCAGGAGTAAGAGTCGGAGTAAGAGTCGAGGCCTGAGTCGCAGTAGAAGCCGAAGTAGGGGGCGCAGCAAAGACCGGGATCCAAATAGGAATGTTGAGCACAGGGAAAGATCGA
AGTTTAAGAGTGAAAGGAATGACCTGGAGAGTTCCTATGTGCCTGTGTCTGCACCACCTCCAAACTCTTCTGAGCAGTATTCCTCTGGGGCACAGTCTATTCCCAGCACTGTTACTGTGATCGCACCT
GCTCACCACTCTGAAAACACAACTGAGAGTTGGTCTAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCTACCACCAAAGAGGCGATGCAGAGATTATGATGAAAGAGGATTTTG
TGTACTTGGTGACCTTTGTCAGTTTGATCATGGAAATGATCCCCTAGTTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTTTCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACCACCTCCTGGAA
TGTTAATGCCTCCAATGCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGTCCTGGCCATAGTATGAGACTTCCTGTTCCCCAAGGACATGGTCAGCCTCCA
CCATCCGTTGTGCTTCCCATACCAAGACCACCTATAACACAATCAAGCTTGATAAACAGCCGTGACCAGCCTGGGACAAGTGCAGTGCCCAATCTTGCATCAGTGGGAACAAGACTACCTCCTCCTTT
ACCCCAGAACCTCCTTTACACAGTATCAGAACGACAGCCCATGTACTCTCGTGAACATGGTGCTGCTGCATCTGAGCGACTTCAGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTGGTGCCAC
CTCGAAACCTCATGGGATCCTCCATTGGATACCATACCTCAGTCTCCAGCCCTACCCCTCTGGTTCCAGATACATATGAACCAGATGGTTACAACCCAGAAGCTCCTAGTATTACTAGTTCTGGTAGA
TCTCAGTACAGACAGTTCTTTTCAAGAACTCAGACACAGCGTCCCAATCTGATTGGCCTAACATCTGGAGATATGGATGTAAATCCAAGAGCTGCTAACATTGTGATCCAGACTGAACCACCAGTTCC
TGTTTCGATTAATAGCAACATAACCAGAGTAGTTCTTGAACCAGATAGTCGAAAAAGAGCTATGAGTGGTTTGGAAGGGCCACTCACAAAGAAACCTTGGCTGGGAAAGCAAGGAAATAACAATCAAA
ATAAACCAGGGTTCTTACGAAAGAATCAGTATACAAACACCAAATTAGAAGTCAAGAAAATCCCTCAGGAATTGAACAACATTACCAAGCTCAATGAACACTTCAGCAAATTTGGAACTATTGTTAAT
ATCCAGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAATATCTTACCAATGAGGAGGCCAGGAAAGCCATTTCTAGCACAGAAGCAGTTCTAAACAACCGATTCATTCGAGTCTTGTGGCA
TAGGGAAAATAATGAGCAACCGACACTACAGTCCTCAGCACAGCTGCTCCTGCAACAACAGCAAACACTTAGTCACCTCTCACAGCAGCACCATCACCTGCCACAGCATCTACATCAGCAGCAGGTGC
TAGTGGCCCAGTCTGCTCCTTCAACAGTGCACGGAGGTATCCAGAAGATGATGAGCAAACCACAGACATCAGGTGCATATGTTCTTAACAAAGTTCCTGTTAAACATCGTCTTGGACATGCAGGTGGT
AACCAGAGTGATGCATCACATTTGTTGAATCAGTCTGGTGGTGCTGGAGAAGATTGCCAGATATTTTCAACTCCAGGCCATCCAAAAATGATTTACAGCTCCTCAAACTTAAAGACACCTTCAAAGCT
CTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAAAAAAAACAGGAAGCAATGAAGTTACAACAAGATATGAGGAAAAAAAGACAGGAAGTGTTAGAAAAGCAAATAGAATGCCAAAAGA
TGTTAATATCCAAGTTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAAATATAATGAAGACTTTGAAAGAGCTTGGAGAGAAGATCTCACAATTAAAAGATGAATTAAAAACATCTTCTGCA
GTCTCCACACCATCTAAAGTGAAGACAAAAACGGAGGCCCAGAAGGAGTTATTAGATACTGAACTGGACCTCCACAAGAGGCTGTCCTCAGGAGAAGACACCACAGAATTACGGAAAAAACTCAGTCA
GTTACAGGTTGAGGCTGCACGGTTAGGTATTTTACCTGTGGGTCGAGGAAAGACCATGTCCTCTCAAGGTCGAGGAAGAGGCCGAGGGCGTGGAGGAAGAGGAAGGGGCTCACTAAATCACATGGTGG
TGGACCATCGTCCCAAAGCACTAACAGTTGGAGGATTCATTGAGGAAGAAAAAGAAGACTTGCTTCAGCATTTCTCAACCGCAAACCAAGGGCCAAAATTTAAAGACCGTCGGCTACAGATATCATGG
CACAAGCCCAAGGTACCATCTATATCCACTGAGACTGAAGAAGAAGAAGTCAAGGAGGAGGAAACAGAAACCTCAGATTTGTTTTTGCCTGATGATGACGATGAAGATGAAGATGAATATGAGTCTCG
CTCATGGCGAAGATGAAATCTGATGCTAGCTGTATAATTTTTAGGAATATTGTTTAGAAGAACAACTTTTAAAAATTATTTAAAAGAAGTCAATGAGCCAAAAAAAATTTTTTTATTTTTCTTTTCAA
CACAGTAGGTTCAAGAACAGCAAGTTTGCTATTTAAACACATCTCATAACTGTACATGATATTAAAGCACCAAAGGCCTAGTGACTTTTACACAGTTGTGAAGATCCACAGCAATGACATGGATAATC
TCTAGAGCCTTATTTTCCACACCACCTTTTTTTTGTTGCTGTTGGTGTTGGATTATGATGTAAATGACAGGGTGTTCAGAAATTTTATTTTGGATTATAATCTACTGATAAAATTTAATTAAATGTCA
AAATCACCTGTAATCTTTTAACTCTCAGTTGTTATGGATGGGTCATCAGACAGTAGGAAATATTTGTAATTAAAATACCCTTTTGCTTTCAAGAGTGGTCTTGGAAGAAAAATATGTTTATTTTAATT
TTAATTTTTTTTTTTTTTTACTTTGGAGGAGCCCAATTTGTATTCAGTCTAAATTTGTTTTTCATGGTTTTTATGTGTGGTAGTACTAGTTCAGTGAAAATCACAACAAACTGTGTGTTCTTAAATGC
TACAGCAATGGTAGCTAGCTCTATAGTATTTCCATTCTCTTGTCATATGAACTCCTGGACTTTTCCTGCTACTGATTCTTAGTTTGCTTTGATATTTAGTGAGCGCTGGTTCGGCTGGTCTTTTTAAA
AATTTTTATAACTCAGAATGTAAAAGGCTTTCACCTATTGCCCCTTTCTCGTCCCCCTTTTCTTCCTCTTGCCTTTCTATTAATAGGCCTGACTTAGTCATCATTGATATAAGTGGTTCATTTGGGCA
ACCGCAGGCAGTCTCCAATAAAAGGTTCAAACCAGCACCTGGATAAATAAGTGATGTTTTGATGAGAATGATGGAAGGATTTTGGGGAGAAGAGAATCACCAGCTTTATTTTTTCCCTCTTTTGAAGC
TTCAGTTCAGTATAGTTACACAGAAGGGTTTAAAAATGTCTGAAATTCTTTTCCTAAATTTAAACCATGATGGTGAGGTGACTGGGGGGTGGGGGGTGGAGGTGGGAGGGGGTTGAGGGCTGAGTATG
CTAGTAATAAATGGGAGTCATATATGACTTTGTTCAGATGACCTTATTTTTTCATAATTTTGTAGCTTGTTGCTATCCATGAACATACGCATCCCTCAGTAGACAGTTTCCTTTACTGTGTGCATTTT
TACTGTACACTGTATAGAGTAGAGTATCTGTTAAGTAAAATATATATGTAAATTTATGTCTTCGTGTTCTGAATGTTAGATGGAAAAGCAGAGGAGCAACACTACACTGTACTGACCCCTGGGAAAAT
AAAATGATTAATGTACCTAGGCTGTCACTTTTTCAAGGATATACACATCTGTGTTTTTATATATGTGTGGTATGAAAATTTGAAACCTCCTGTTGTCTCCAAAAGGGTCTTGGTGACCACTATATCAA
GGATTTTGTTTGCTGAGGTAAAGACAATTTCTCAATATAGAAACTATTCACTAAGAACTTAAAACCATCAGGATTCTAGATTTACTTAGCTATAAGAAGTTAAATCCCACGTTCTGATAATCTTTATT
CTTCTACATGTTTTCCTGGAATGATGTGTCAAACCAGGGTCATTTTTAAGTTCATATAATTTTCTTTCATAATAATGAGGACTTCCTTTTTCTAGGTTATTGTTATATTTCTAGTAACACTGAAGGTA
AAATAAGCTTATAAAAGAAGGAAAACATCAGAATGGTGTATCTAGAATACACAATCTTGCTCCTTACTCCTCCATCATCTCTAATGAAATTTTTCTTGATGTCTGTGGCTCAGTCAGTATATATTTTG
AAAGATTCATTGTGGTGAATATTTTGAGTCCTGACAGTTTAAACGTGATAGAGGGAACAAAGGATTTATATATTTTTTGTACAAAGTTTTTTCTTAAACTGTATAATTTTGTAAATAATTTGTTTGGG
TTTTTTTTTTGTGTACTAAAACTACCAGCGTATAGATTTCAATAAGAATTGTTGTATTTTTGTATTTGGAAACTGAAAATTACAGTAAATAAATGGAACTCTAAGAAAAATTTCAGTAGACAGTTCAA
CAGAATGAGATTCCTTTTCATATGATTTTTTTGACCTCAAAATGGACATCTTATTTCACTCTCAGTAAAAAGTTGAAAATTTGACTTTTTAGTATTGGGGGCAGAAGATAGAAGTGTGTTAAAGTGAA
AAACAGTTTTTTCAGTAAGGTTTGAGGCCCTTTCTATAAGTTTTCAGTACACCTTAAACAGGACTAAAAATACTTTAAAAGTGTGCTTTCAAAGAATTTTAAAACATGTTTGACTCAAAGATGAATTT
GAAGTGAGTTAATTATAATACTGGAAAACTTCAGGTTAGCATAAAATAGTTTATATATATCCCCTGCCCCCTTTGGGATTTACTTCCACCATCAAATCTTCAACTGTTAGAATTTCACTTAAAAGTGA
ATAACTGCCATACATGTTTTCTTGGCATCTTCATTTACAGAAATAACATACAGCATCTAAAGCAAGTTCTGTCCCTCTTAATGTGTATGACATCTTTTTAAGTAGCTGATCAGCAATAATAGCCACCA
GTTGACTAGGTCAGCCTGATATACTAGTGGATCACTGTCCAAGATAAAAAGGTAACCCCAAGTATTGCAAAATTTCCCTCAATTTCTTTATGTAACATTGAAGAAATGTTGTTACCAGCTAAGATGAT
AAATTGGAAAACAGTCTTGTTAAGGTGAAAGGGGTCCTTGGTGATGGATCATTATTTCAAAAAAGAAAAAAATCATGTGAAAAGGAATAGTGGTTCCTCTTGATGTATAGTATGCCTGTATTATAGTT
TTTACAAAATTGTGAACTTGTGTAATAGTATAATAGGAGATATTGTTGAATTTCTAACTGTTTATACATTTAAATTCATATATGTAATGTTTGTTTTATCAATTACAATCTGAATTTCTAAGAAGCAT
GTTGACTTTTGCAATAAAGATGCAATATGGAATGGTTCACAATTGGAAAAAAAAAAGAAAAAAGATGAAAGTATTACAAATTTAAAAGAATTTGGAAAATTTATGAACCATTCCAAAAATTATAACAA
TCACCAAAA

hide sequence


Protein RefSeqs	NP_061862	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH09537	(Get FASTA)	NCBI Sequence Viewer
	AAH33524	(Get FASTA)	NCBI Sequence Viewer
	BAA92549	(Get FASTA)	NCBI Sequence Viewer
	BAG54723	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000265271
	ENSP00000265271.5
GenBank Protein	Q9P2N5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_061862 ⟸ NM_018989

- UniProtKB:

Q8IYW9 (UniProtKB/Swiss-Prot), Q9P2N5 (UniProtKB/Swiss-Prot), U3KPZ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPLLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSES
SERRTREKKREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW
SNYYNNHSSSNSFGRNLPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPP
ITQSSLINSRDQPGTSAVPNLASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQ
TQRPNLIGLTSGDMDVNPRAANIVIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEA
ALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVLVAQSAPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQ
SGGAGEDCQIFSTPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKT
EAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFSTANQGPKFKDRRLQISWHKPKVPSISTE
TEEEEVKEEETETSDLFLPDDDDEDEDEYESRSWRR

hide sequence

Ensembl Acc Id:

ENSP00000475384 ⟸ ENST00000506502

Ensembl Acc Id:

ENSP00000265271 ⟸ ENST00000265271

Protein Domains

C3H1-type PWI RRM

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9P2N5-F1-model_v2	AlphaFold	Q9P2N5	1-1060	view protein structure

RGD ID:

6803498

Promoter ID:

HG_KWN:51441

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

NM_018989, UC003LNY.2

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	5	145,563,014 - 145,563,514 (+)	MPROMDB

RGD ID:

6871120

Promoter ID:

EPDNEW_H8724

Type:

initiation region

Name:

RBM27_1

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8725 EPDNEW_H8727 EPDNEW_H8726 EPDNEW_H8728 EPDNEW_H8729 EPDNEW_H8730

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,203,605 - 146,203,665	EPDNEW

RGD ID:

6871122

Promoter ID:

EPDNEW_H8725

Type:

initiation region

Name:

RBM27_6

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8724 EPDNEW_H8727 EPDNEW_H8726 EPDNEW_H8728 EPDNEW_H8729 EPDNEW_H8730

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,230,765 - 146,230,825	EPDNEW

RGD ID:

6871126

Promoter ID:

EPDNEW_H8726

Type:

initiation region

Name:

RBM27_3

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8724 EPDNEW_H8725 EPDNEW_H8727 EPDNEW_H8728 EPDNEW_H8729 EPDNEW_H8730

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,237,380 - 146,237,440	EPDNEW

RGD ID:

6871124

Promoter ID:

EPDNEW_H8727

Type:

initiation region

Name:

RBM27_5

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8724 EPDNEW_H8725 EPDNEW_H8726 EPDNEW_H8728 EPDNEW_H8729 EPDNEW_H8730

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,251,770 - 146,251,830	EPDNEW

RGD ID:

6871128

Promoter ID:

EPDNEW_H8728

Type:

initiation region

Name:

RBM27_7

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8724 EPDNEW_H8725 EPDNEW_H8727 EPDNEW_H8726 EPDNEW_H8729 EPDNEW_H8730

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,284,636 - 146,284,696	EPDNEW

RGD ID:

6871130

Promoter ID:

EPDNEW_H8729

Type:

initiation region

Name:

RBM27_4

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8724 EPDNEW_H8725 EPDNEW_H8727 EPDNEW_H8726 EPDNEW_H8728 EPDNEW_H8730

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,286,340 - 146,286,400	EPDNEW

RGD ID:

6871186

Promoter ID:

EPDNEW_H8730

Type:

multiple initiation site

Name:

RBM27_2

Description:

RNA binding motif protein 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H8724 EPDNEW_H8725 EPDNEW_H8727 EPDNEW_H8726 EPDNEW_H8728 EPDNEW_H8729

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	146,287,150 - 146,287,210	EPDNEW

Database	Acc Id	Source(s)
COSMIC	RBM27	COSMIC
Ensembl Genes	ENSG00000091009	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSG00000275740	Ensembl
Ensembl Transcript	ENST00000265271	ENTREZGENE
	ENST00000265271.7	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
	PWI domain	UniProtKB/Swiss-Prot
GTEx	ENSG00000091009	GTEx
	ENSG00000275740	GTEx
HGNC ID	HGNC:29243	ENTREZGENE
Human Proteome Map	RBM27	Human Proteome Map
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	PWI_dom	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RBM26/27	UniProtKB/Swiss-Prot
	RBM27_RRM	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	Znf_CCCH	UniProtKB/Swiss-Prot
KEGG Report	hsa:54439	UniProtKB/Swiss-Prot
NCBI Gene	54439	ENTREZGENE
OMIM	620082	OMIM
PANTHER	PTHR14398	UniProtKB/Swiss-Prot
	RNA-BINDING PROTEIN 27	UniProtKB/Swiss-Prot
Pfam	PWI	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
	zf-CCCH	UniProtKB/Swiss-Prot
PharmGKB	PA134925458	PharmGKB
PROSITE	RRM	UniProtKB/Swiss-Prot
	ZF_C3H1	UniProtKB/Swiss-Prot
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	Q05DK9_HUMAN	UniProtKB/TrEMBL
	Q8IYW9	ENTREZGENE
	Q9P2N5	ENTREZGENE, UniProtKB/Swiss-Prot
	U3KPZ7	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q8IYW9	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar